HEADER LIGASE,TRANSFERASE 20-APR-20 7BXP TITLE 2-AMINO-3-KETOBUTYRATE COA LIGASE FROM CUPRIAVIDUS NECATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-AMINO-3-KETOBUTYRATE COENZYME A LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AKB LIGASE,GLYCINE ACETYLTRANSFERASE; COMPND 5 EC: 2.3.1.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPRIAVIDUS NECATOR; SOURCE 3 ORGANISM_TAXID: 106590; SOURCE 4 GENE: KBL, H16_B0819; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 2-AMINO-3-KETOBUTYRATE COA LIGASE, CUPRIAVIDUS NECATOR, LIGASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MOTOYAMA,S.NAKANO,F.HASEBE,N.MIYOSHI,S.ITO REVDAT 3 29-NOV-23 7BXP 1 REMARK REVDAT 2 28-JUL-21 7BXP 1 JRNL REVDAT 1 21-APR-21 7BXP 0 JRNL AUTH T.MOTOYAMA,S.NAKANO,F.HASEBE,R.MIYATA,S.KUMAZAWA,N.MIYOSHI, JRNL AUTH 2 S.ITO JRNL TITL CHEMOENZYMATIC SYNTHESIS OF 3-ETHYL-2,5-DIMETHYLPYRAZINE BY JRNL TITL 2 L-THREONINE 3-DEHYDROGENASE AND 2-AMINO-3-KETOBUTYRATE COA JRNL TITL 3 LIGASE/L-THREONINE ALDOLASE JRNL REF COMMUN CHEM V. 4 108 2021 JRNL REFN ESSN 2399-3669 JRNL DOI 10.1038/S42004-021-00545-8 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 73060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 3559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0900 - 5.2600 1.00 2839 145 0.1613 0.1735 REMARK 3 2 5.2600 - 4.1800 1.00 2794 149 0.1385 0.1595 REMARK 3 3 4.1800 - 3.6500 1.00 2782 155 0.1341 0.1623 REMARK 3 4 3.6500 - 3.3200 1.00 2804 153 0.1486 0.1716 REMARK 3 5 3.3200 - 3.0800 1.00 2767 142 0.1684 0.1667 REMARK 3 6 3.0800 - 2.9000 1.00 2827 143 0.1661 0.2197 REMARK 3 7 2.9000 - 2.7500 1.00 2792 121 0.1866 0.2356 REMARK 3 8 2.7500 - 2.6300 1.00 2779 131 0.1808 0.2299 REMARK 3 9 2.6300 - 2.5300 1.00 2777 149 0.1765 0.2241 REMARK 3 10 2.5300 - 2.4400 1.00 2778 135 0.1759 0.2125 REMARK 3 11 2.4400 - 2.3700 1.00 2812 126 0.1686 0.2221 REMARK 3 12 2.3700 - 2.3000 1.00 2784 142 0.1610 0.1852 REMARK 3 13 2.3000 - 2.2400 1.00 2712 158 0.1708 0.2159 REMARK 3 14 2.2400 - 2.1900 1.00 2787 146 0.1672 0.2397 REMARK 3 15 2.1900 - 2.1400 1.00 2801 145 0.1711 0.2071 REMARK 3 16 2.1400 - 2.0900 1.00 2757 139 0.1766 0.2303 REMARK 3 17 2.0900 - 2.0500 1.00 2782 152 0.1791 0.1775 REMARK 3 18 2.0500 - 2.0100 1.00 2757 150 0.1794 0.2384 REMARK 3 19 2.0100 - 1.9700 1.00 2770 142 0.1813 0.2015 REMARK 3 20 1.9700 - 1.9400 1.00 2785 127 0.1836 0.2208 REMARK 3 21 1.9400 - 1.9100 1.00 2783 133 0.1925 0.2253 REMARK 3 22 1.9100 - 1.8800 1.00 2774 127 0.1885 0.2333 REMARK 3 23 1.8800 - 1.8500 1.00 2799 150 0.1955 0.2589 REMARK 3 24 1.8500 - 1.8300 1.00 2680 156 0.1951 0.2790 REMARK 3 25 1.8300 - 1.8000 0.98 2779 143 0.2089 0.2239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.171 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6216 REMARK 3 ANGLE : 0.788 8394 REMARK 3 CHIRALITY : 0.052 938 REMARK 3 PLANARITY : 0.005 1110 REMARK 3 DIHEDRAL : 19.669 920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73094 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 41.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1FC4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DEHYDRATE PH 5.6, 30% W/V PEG400, 4% W/V PEG P REMARK 280 400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.92350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 LEU A 400 REMARK 465 GLU A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 MET B -3 REMARK 465 GLY B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 LEU B 400 REMARK 465 GLU B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 465 HIS B 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 819 O HOH B 823 1.69 REMARK 500 O HOH A 915 O HOH B 911 1.80 REMARK 500 O HOH A 509 O HOH A 828 1.86 REMARK 500 O HOH B 522 O HOH B 834 1.86 REMARK 500 O HOH B 580 O HOH B 901 1.91 REMARK 500 O HOH B 808 O HOH B 908 1.99 REMARK 500 O HOH A 688 O HOH A 829 2.02 REMARK 500 O HOH B 707 O HOH B 847 2.03 REMARK 500 O HOH B 827 O HOH B 836 2.07 REMARK 500 O HOH B 842 O HOH B 926 2.08 REMARK 500 O HOH A 708 O HOH A 770 2.09 REMARK 500 NZ LYS B 149 O HOH B 501 2.09 REMARK 500 NH2 ARG A 394 O HOH A 501 2.09 REMARK 500 O SER B 148 O HOH B 502 2.10 REMARK 500 O HOH A 840 O HOH A 904 2.12 REMARK 500 O HOH A 737 O HOH A 766 2.12 REMARK 500 O HOH B 836 O HOH B 935 2.13 REMARK 500 O HOH A 860 O HOH A 876 2.13 REMARK 500 O HOH A 584 O HOH A 829 2.14 REMARK 500 O HOH B 797 O HOH B 905 2.14 REMARK 500 O HOH B 827 O HOH B 935 2.14 REMARK 500 OD1 ASP B 338 O HOH B 503 2.14 REMARK 500 O HOH B 889 O HOH B 937 2.18 REMARK 500 O HOH A 833 O HOH A 913 2.19 REMARK 500 O HOH A 682 O HOH A 864 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 762 O HOH B 514 1455 1.55 REMARK 500 O HOH A 508 O HOH B 514 1455 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 154 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 154 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 50 34.87 -149.67 REMARK 500 ILE A 84 -72.36 -93.22 REMARK 500 CYS A 85 44.43 -148.83 REMARK 500 ARG A 176 -73.67 -79.29 REMARK 500 HIS A 215 35.86 -97.83 REMARK 500 ALA A 216 -44.67 -144.40 REMARK 500 LLP A 246 -109.44 -114.75 REMARK 500 ALA A 251 -61.33 -92.18 REMARK 500 TYR A 335 -49.80 70.74 REMARK 500 CYS B 50 34.99 -141.90 REMARK 500 ILE B 84 -86.27 -92.79 REMARK 500 ARG B 176 -71.16 -79.51 REMARK 500 HIS B 215 32.99 -96.63 REMARK 500 ALA B 216 -41.54 -141.83 REMARK 500 PHE B 219 -16.39 -144.27 REMARK 500 LLP B 246 -108.81 -117.86 REMARK 500 TYR B 335 -59.79 71.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 936 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 937 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 942 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 943 DISTANCE = 6.13 ANGSTROMS DBREF 7BXP A 1 399 UNP Q0K313 Q0K313_CUPNH 1 399 DBREF 7BXP B 1 399 UNP Q0K313 Q0K313_CUPNH 1 399 SEQADV 7BXP MET A -3 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP GLY A -2 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS A -1 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP MET A 0 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP LEU A 400 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP GLU A 401 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS A 402 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS A 403 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS A 404 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS A 405 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS A 406 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS A 407 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP MET B -3 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP GLY B -2 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS B -1 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP MET B 0 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP LEU B 400 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP GLU B 401 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS B 402 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS B 403 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS B 404 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS B 405 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS B 406 UNP Q0K313 EXPRESSION TAG SEQADV 7BXP HIS B 407 UNP Q0K313 EXPRESSION TAG SEQRES 1 A 411 MET GLY HIS MET MET SER ASN ALA GLU ALA PHE TYR ALA SEQRES 2 A 411 SER ILE ARG THR GLU LEU GLU SER ILE ARG ALA ALA GLY SEQRES 3 A 411 LEU PHE LYS ASN GLU ARG VAL ILE ALA THR PRO GLN GLY SEQRES 4 A 411 ALA ARG VAL ARG THR THR ASP GLY ARG GLU VAL ILE ASN SEQRES 5 A 411 LEU CYS ALA ASN ASN TYR LEU GLY LEU SER SER HIS PRO SEQRES 6 A 411 GLN VAL ILE GLU ALA ALA HIS GLU ALA LEU ARG THR HIS SEQRES 7 A 411 GLY PHE GLY LEU SER SER VAL ARG PHE ILE CYS GLY THR SEQRES 8 A 411 GLN ASP LEU HIS LYS THR LEU GLU ALA ARG LEU SER ALA SEQRES 9 A 411 PHE LEU GLY THR GLU ASP THR ILE LEU TYR GLY SER ALA SEQRES 10 A 411 PHE ASP ALA ASN GLY GLY LEU PHE GLU THR LEU LEU GLY SEQRES 11 A 411 ALA GLU ASP ALA VAL ILE SER ASP ALA LEU ASN HIS ALA SEQRES 12 A 411 SER ILE ILE ASP GLY VAL ARG LEU SER LYS ALA ARG ARG SEQRES 13 A 411 TYR ARG TYR GLN HIS ASN ASP MET ASP ASP LEU ARG VAL SEQRES 14 A 411 GLN LEU GLU GLN ALA ARG ALA ASP GLY ALA ARG TYR THR SEQRES 15 A 411 LEU VAL PHE SER ASP GLY VAL PHE SER MET ASP GLY THR SEQRES 16 A 411 VAL ALA ARG LEU ASP GLU MET ARG ALA ILE CYS ASP GLU SEQRES 17 A 411 TYR GLY ALA LEU LEU GLY ILE ASP GLU CYS HIS ALA THR SEQRES 18 A 411 GLY PHE MET GLY GLN ARG GLY ARG GLY THR HIS GLU ALA SEQRES 19 A 411 ARG GLY VAL PHE GLY LYS ILE ASP ILE ILE THR GLY THR SEQRES 20 A 411 LEU GLY LLP ALA LEU GLY GLY ALA SER GLY GLY PHE THR SEQRES 21 A 411 SER ALA ARG LYS GLU VAL VAL ALA LEU LEU ARG GLN ARG SEQRES 22 A 411 SER ARG PRO TYR LEU PHE SER ASN THR VAL ALA PRO ALA SEQRES 23 A 411 ILE VAL GLY ALA SER ILE ALA VAL LEU ASP ILE LEU GLU SEQRES 24 A 411 ALA SER THR GLU LEU ARG ASP ARG LEU GLU GLY ASN THR SEQRES 25 A 411 ARG PHE PHE ARG ALA GLY LEU ASP ARG LEU GLY PHE ASP SEQRES 26 A 411 VAL LYS ALA GLY ASP HIS PRO ILE ILE PRO ILE MET VAL SEQRES 27 A 411 TYR ASP ALA ASP LYS ALA GLN GLN LEU ALA GLN ARG LEU SEQRES 28 A 411 LEU GLU LEU GLY VAL TYR VAL VAL GLY PHE PHE TYR PRO SEQRES 29 A 411 VAL VAL PRO LYS GLY GLN ALA ARG ILE ARG VAL GLN MET SEQRES 30 A 411 SER ALA LEU HIS ASP GLU ALA ALA LEU GLN ALA ALA LEU SEQRES 31 A 411 ASP ALA PHE GLY GLN ALA GLY ARG GLU LEU GLY LEU ILE SEQRES 32 A 411 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 411 MET GLY HIS MET MET SER ASN ALA GLU ALA PHE TYR ALA SEQRES 2 B 411 SER ILE ARG THR GLU LEU GLU SER ILE ARG ALA ALA GLY SEQRES 3 B 411 LEU PHE LYS ASN GLU ARG VAL ILE ALA THR PRO GLN GLY SEQRES 4 B 411 ALA ARG VAL ARG THR THR ASP GLY ARG GLU VAL ILE ASN SEQRES 5 B 411 LEU CYS ALA ASN ASN TYR LEU GLY LEU SER SER HIS PRO SEQRES 6 B 411 GLN VAL ILE GLU ALA ALA HIS GLU ALA LEU ARG THR HIS SEQRES 7 B 411 GLY PHE GLY LEU SER SER VAL ARG PHE ILE CYS GLY THR SEQRES 8 B 411 GLN ASP LEU HIS LYS THR LEU GLU ALA ARG LEU SER ALA SEQRES 9 B 411 PHE LEU GLY THR GLU ASP THR ILE LEU TYR GLY SER ALA SEQRES 10 B 411 PHE ASP ALA ASN GLY GLY LEU PHE GLU THR LEU LEU GLY SEQRES 11 B 411 ALA GLU ASP ALA VAL ILE SER ASP ALA LEU ASN HIS ALA SEQRES 12 B 411 SER ILE ILE ASP GLY VAL ARG LEU SER LYS ALA ARG ARG SEQRES 13 B 411 TYR ARG TYR GLN HIS ASN ASP MET ASP ASP LEU ARG VAL SEQRES 14 B 411 GLN LEU GLU GLN ALA ARG ALA ASP GLY ALA ARG TYR THR SEQRES 15 B 411 LEU VAL PHE SER ASP GLY VAL PHE SER MET ASP GLY THR SEQRES 16 B 411 VAL ALA ARG LEU ASP GLU MET ARG ALA ILE CYS ASP GLU SEQRES 17 B 411 TYR GLY ALA LEU LEU GLY ILE ASP GLU CYS HIS ALA THR SEQRES 18 B 411 GLY PHE MET GLY GLN ARG GLY ARG GLY THR HIS GLU ALA SEQRES 19 B 411 ARG GLY VAL PHE GLY LYS ILE ASP ILE ILE THR GLY THR SEQRES 20 B 411 LEU GLY LLP ALA LEU GLY GLY ALA SER GLY GLY PHE THR SEQRES 21 B 411 SER ALA ARG LYS GLU VAL VAL ALA LEU LEU ARG GLN ARG SEQRES 22 B 411 SER ARG PRO TYR LEU PHE SER ASN THR VAL ALA PRO ALA SEQRES 23 B 411 ILE VAL GLY ALA SER ILE ALA VAL LEU ASP ILE LEU GLU SEQRES 24 B 411 ALA SER THR GLU LEU ARG ASP ARG LEU GLU GLY ASN THR SEQRES 25 B 411 ARG PHE PHE ARG ALA GLY LEU ASP ARG LEU GLY PHE ASP SEQRES 26 B 411 VAL LYS ALA GLY ASP HIS PRO ILE ILE PRO ILE MET VAL SEQRES 27 B 411 TYR ASP ALA ASP LYS ALA GLN GLN LEU ALA GLN ARG LEU SEQRES 28 B 411 LEU GLU LEU GLY VAL TYR VAL VAL GLY PHE PHE TYR PRO SEQRES 29 B 411 VAL VAL PRO LYS GLY GLN ALA ARG ILE ARG VAL GLN MET SEQRES 30 B 411 SER ALA LEU HIS ASP GLU ALA ALA LEU GLN ALA ALA LEU SEQRES 31 B 411 ASP ALA PHE GLY GLN ALA GLY ARG GLU LEU GLY LEU ILE SEQRES 32 B 411 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 7BXP LLP A 246 LYS MODIFIED RESIDUE MODRES 7BXP LLP B 246 LYS MODIFIED RESIDUE HET LLP A 246 24 HET LLP B 246 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *880(H2 O) HELIX 1 AA1 SER A 2 ALA A 21 1 20 HELIX 2 AA2 GLY A 56 SER A 59 5 4 HELIX 3 AA3 HIS A 60 GLY A 75 1 16 HELIX 4 AA4 VAL A 81 GLY A 86 1 6 HELIX 5 AA5 GLN A 88 GLY A 103 1 16 HELIX 6 AA6 SER A 112 GLY A 119 1 8 HELIX 7 AA7 LEU A 120 LEU A 125 1 6 HELIX 8 AA8 HIS A 138 SER A 148 1 11 HELIX 9 AA9 ASP A 159 ASP A 173 1 15 HELIX 10 AB1 ARG A 194 GLY A 206 1 13 HELIX 11 AB2 GLY A 226 ARG A 231 1 6 HELIX 12 AB3 ARG A 259 SER A 270 1 12 HELIX 13 AB4 SER A 270 PHE A 275 1 6 HELIX 14 AB5 ALA A 280 SER A 297 1 18 HELIX 15 AB6 THR A 298 GLY A 319 1 22 HELIX 16 AB7 ASP A 336 LEU A 350 1 15 HELIX 17 AB8 ASP A 378 LEU A 396 1 19 HELIX 18 AB9 SER B 2 ALA B 21 1 20 HELIX 19 AC1 GLY B 56 SER B 59 5 4 HELIX 20 AC2 HIS B 60 GLY B 75 1 16 HELIX 21 AC3 GLN B 88 GLY B 103 1 16 HELIX 22 AC4 SER B 112 GLY B 119 1 8 HELIX 23 AC5 LEU B 120 LEU B 125 1 6 HELIX 24 AC6 HIS B 138 SER B 148 1 11 HELIX 25 AC7 ASP B 159 ASP B 173 1 15 HELIX 26 AC8 ARG B 194 GLY B 206 1 13 HELIX 27 AC9 GLY B 226 ARG B 231 1 6 HELIX 28 AD1 ARG B 259 SER B 270 1 12 HELIX 29 AD2 SER B 270 SER B 276 1 7 HELIX 30 AD3 ALA B 280 SER B 297 1 18 HELIX 31 AD4 THR B 298 GLY B 319 1 22 HELIX 32 AD5 ASP B 336 LEU B 350 1 15 HELIX 33 AD6 ASP B 378 LEU B 396 1 19 SHEET 1 AA1 3 ARG A 37 ARG A 39 0 SHEET 2 AA1 3 GLU A 45 ASN A 48 -1 O VAL A 46 N VAL A 38 SHEET 3 AA1 3 VAL A 352 TYR A 353 1 O TYR A 353 N ILE A 47 SHEET 1 AA2 7 ASP A 106 TYR A 110 0 SHEET 2 AA2 7 GLY A 254 ALA A 258 -1 O THR A 256 N ILE A 108 SHEET 3 AA2 7 ILE A 239 THR A 243 -1 N ILE A 240 O SER A 257 SHEET 4 AA2 7 LEU A 208 ASP A 212 1 N ILE A 211 O THR A 241 SHEET 5 AA2 7 THR A 178 ASP A 183 1 N VAL A 180 O GLY A 210 SHEET 6 AA2 7 ALA A 130 ASP A 134 1 N ILE A 132 O PHE A 181 SHEET 7 AA2 7 ARG A 151 TYR A 155 1 O TYR A 153 N SER A 133 SHEET 1 AA3 3 ILE A 329 TYR A 335 0 SHEET 2 AA3 3 ALA A 367 GLN A 372 -1 O VAL A 371 N ILE A 330 SHEET 3 AA3 3 GLY A 356 PHE A 357 -1 N PHE A 357 O ARG A 368 SHEET 1 AA4 3 ARG B 37 ARG B 39 0 SHEET 2 AA4 3 GLU B 45 ASN B 48 -1 O VAL B 46 N VAL B 38 SHEET 3 AA4 3 VAL B 352 TYR B 353 1 O TYR B 353 N ILE B 47 SHEET 1 AA5 7 ASP B 106 TYR B 110 0 SHEET 2 AA5 7 GLY B 254 ALA B 258 -1 O THR B 256 N ILE B 108 SHEET 3 AA5 7 ILE B 239 THR B 243 -1 N ILE B 240 O SER B 257 SHEET 4 AA5 7 LEU B 208 ASP B 212 1 N ILE B 211 O THR B 241 SHEET 5 AA5 7 THR B 178 ASP B 183 1 N THR B 178 O LEU B 208 SHEET 6 AA5 7 ALA B 130 ASP B 134 1 N ILE B 132 O LEU B 179 SHEET 7 AA5 7 ARG B 151 TYR B 155 1 O ARG B 151 N VAL B 131 SHEET 1 AA6 4 ASP B 321 VAL B 322 0 SHEET 2 AA6 4 ILE B 329 TYR B 335 -1 O MET B 333 N ASP B 321 SHEET 3 AA6 4 ALA B 367 GLN B 372 -1 O ILE B 369 N ILE B 332 SHEET 4 AA6 4 VAL B 355 PHE B 357 -1 N VAL B 355 O ARG B 370 LINK C GLY A 245 N LLP A 246 1555 1555 1.33 LINK C LLP A 246 N ALA A 247 1555 1555 1.32 LINK C GLY B 245 N LLP B 246 1555 1555 1.33 LINK C LLP B 246 N ALA B 247 1555 1555 1.33 CISPEP 1 TYR A 359 PRO A 360 0 0.87 CISPEP 2 TYR B 359 PRO B 360 0 6.24 CRYST1 58.376 105.847 67.744 90.00 105.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017130 0.000000 0.004844 0.00000 SCALE2 0.000000 0.009448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015340 0.00000 CONECT 1872 1889 CONECT 1874 1875 1882 CONECT 1875 1874 1876 1877 CONECT 1876 1875 CONECT 1877 1875 1878 1879 CONECT 1878 1877 CONECT 1879 1877 1880 1881 CONECT 1880 1879 1895 CONECT 1881 1879 1882 1883 CONECT 1882 1874 1881 CONECT 1883 1881 1884 CONECT 1884 1883 1885 CONECT 1885 1884 1886 1887 1888 CONECT 1886 1885 CONECT 1887 1885 CONECT 1888 1885 CONECT 1889 1872 1890 CONECT 1890 1889 1891 1896 CONECT 1891 1890 1892 CONECT 1892 1891 1893 CONECT 1893 1892 1894 CONECT 1894 1893 1895 CONECT 1895 1880 1894 CONECT 1896 1890 1897 1898 CONECT 1897 1896 CONECT 1898 1896 CONECT 4933 4950 CONECT 4935 4936 4943 CONECT 4936 4935 4937 4938 CONECT 4937 4936 CONECT 4938 4936 4939 4940 CONECT 4939 4938 CONECT 4940 4938 4941 4942 CONECT 4941 4940 4956 CONECT 4942 4940 4943 4944 CONECT 4943 4935 4942 CONECT 4944 4942 4945 CONECT 4945 4944 4946 CONECT 4946 4945 4947 4948 4949 CONECT 4947 4946 CONECT 4948 4946 CONECT 4949 4946 CONECT 4950 4933 4951 CONECT 4951 4950 4952 4957 CONECT 4952 4951 4953 CONECT 4953 4952 4954 CONECT 4954 4953 4955 CONECT 4955 4954 4956 CONECT 4956 4941 4955 CONECT 4957 4951 4958 4959 CONECT 4958 4957 CONECT 4959 4957 MASTER 364 0 2 33 27 0 0 6 7000 2 52 64 END