HEADER LIGASE 21-APR-20 7BY6 TITLE PLASMODIUM VIVAX CYTOPLASMIC PHENYLALANYL-TRNA SYNTHETASE IN COMPLEX TITLE 2 WITH BRD1389 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.1.1.20; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN, PUTATIVE; COMPND 8 CHAIN: B; COMPND 9 EC: 6.1.1.20; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_TAXID: 5855; SOURCE 4 GENE: PVX_081300; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM11; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 11 ORGANISM_TAXID: 5855; SOURCE 12 GENE: PVX_090880; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PETM41 KEYWDS AMINOACYLATION, AMINOACYL-TRNA SYNTHETASE, TRNA-BINDING, ATP-BINDING, KEYWDS 2 AUXILIARY POCKET, HETEROTETRAMERIC, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MALHOTRA,S.MANMOHAN,K.HARLOS,B.MELILLO,S.L.SCHREIBER,Y.MANICKAM, AUTHOR 2 S.SHARMA REVDAT 3 29-NOV-23 7BY6 1 REMARK REVDAT 2 27-JAN-21 7BY6 1 JRNL REVDAT 1 04-NOV-20 7BY6 0 JRNL AUTH M.SHARMA,N.MALHOTRA,M.YOGAVEL,K.HARLOS,B.MELILLO,E.COMER, JRNL AUTH 2 A.GONSE,S.PARVEZ,B.MITASEV,F.G.FANG,S.L.SCHREIBER,A.SHARMA JRNL TITL STRUCTURAL BASIS OF MALARIA PARASITE PHENYLALANINE JRNL TITL 2 TRNA-SYNTHETASE INHIBITION BY BICYCLIC AZETIDINES. JRNL REF NAT COMMUN V. 12 343 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33436639 JRNL DOI 10.1038/S41467-020-20478-5 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15RC1_3423 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 121.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1121.7824 - 6.2328 0.99 2859 137 0.2175 0.2674 REMARK 3 2 6.2328 - 4.9471 1.00 2724 147 0.2326 0.3032 REMARK 3 3 4.9471 - 4.3217 1.00 2698 144 0.1676 0.2415 REMARK 3 4 4.3217 - 3.9266 1.00 2651 154 0.1872 0.2393 REMARK 3 5 3.9266 - 3.6451 1.00 2677 143 0.2091 0.2943 REMARK 3 6 3.6451 - 3.4302 1.00 2650 138 0.2147 0.3700 REMARK 3 7 3.4302 - 3.2584 1.00 2618 155 0.2393 0.3214 REMARK 3 8 3.2584 - 3.1165 1.00 2628 148 0.2752 0.3950 REMARK 3 9 3.1165 - 2.9970 0.97 2574 130 0.2935 0.3893 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 21.8053 3.5471 25.3067 REMARK 3 T TENSOR REMARK 3 T11: 0.7068 T22: 0.6935 REMARK 3 T33: 0.6182 T12: -0.0801 REMARK 3 T13: -0.0720 T23: 0.0964 REMARK 3 L TENSOR REMARK 3 L11: 1.8371 L22: 1.4340 REMARK 3 L33: 0.5375 L12: 1.3907 REMARK 3 L13: 0.5193 L23: 0.6892 REMARK 3 S TENSOR REMARK 3 S11: 0.2636 S12: -0.3099 S13: -0.3170 REMARK 3 S21: 0.2400 S22: -0.1890 S23: -0.2679 REMARK 3 S31: 0.0629 S32: 0.1267 S33: 0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9688 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.997 REMARK 200 RESOLUTION RANGE LOW (A) : 136.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3L4G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, 3% W/V POLY REMARK 280 -GAMA-GLUTAMIC ACID (NA+ FORM, LOW MOLECULAR WEIGHT), 3% W/V REMARK 280 PEG20000, 0.1 M AMMONIUM SULPHATE, 0.3 M SODIUM FORMATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 68.26150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.03550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.26150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.03550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 75420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 42 REMARK 465 GLU B 43 REMARK 465 ASN B 85 REMARK 465 SER B 86 REMARK 465 GLU B 87 REMARK 465 GLU B 88 REMARK 465 ALA B 89 REMARK 465 CYS B 90 REMARK 465 VAL B 91 REMARK 465 LYS B 285 REMARK 465 ALA B 286 REMARK 465 GLU B 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 271 CG CD1 CD2 REMARK 470 TYR A 273 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 274 CG CD1 CD2 REMARK 470 LYS A 277 CD CE NZ REMARK 470 ASN A 278 CG OD1 ND2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 THR A 327 OG1 CG2 REMARK 470 SER A 349 OG REMARK 470 LEU A 352 CG CD1 CD2 REMARK 470 GLN A 353 CG CD OE1 NE2 REMARK 470 GLU A 367 CG CD OE1 OE2 REMARK 470 THR A 369 OG1 CG2 REMARK 470 TYR A 424 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 425 CG CD OE1 NE2 REMARK 470 LYS A 426 CG CD CE NZ REMARK 470 THR A 427 OG1 CG2 REMARK 470 ILE A 430 CG1 CG2 CD1 REMARK 470 ILE A 431 CG1 CG2 CD1 REMARK 470 GLU A 445 CG CD OE1 OE2 REMARK 470 LEU A 447 CG CD1 CD2 REMARK 470 THR A 450 OG1 CG2 REMARK 470 ILE A 463 CG1 CG2 CD1 REMARK 470 LEU A 472 CG CD1 CD2 REMARK 470 THR A 498 OG1 CG2 REMARK 470 SER A 501 OG REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 ILE A 559 CG1 CG2 CD1 REMARK 470 ARG A 560 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 565 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 566 CG CD NE CZ NH1 NH2 REMARK 470 SER A 567 OG REMARK 470 VAL A 568 CG1 CG2 REMARK 470 ILE A 569 CG1 CG2 CD1 REMARK 470 MET B 0 CG SD CE REMARK 470 SER B 5 OG REMARK 470 VAL B 6 CG1 CG2 REMARK 470 HIS B 7 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 ASP B 10 CG OD1 OD2 REMARK 470 LEU B 11 CG CD1 CD2 REMARK 470 ILE B 12 CG1 CG2 CD1 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LEU B 15 CG CD1 CD2 REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 ILE B 19 CG1 CG2 CD1 REMARK 470 LEU B 24 CG CD1 CD2 REMARK 470 ILE B 27 CG1 CG2 CD1 REMARK 470 VAL B 38 CG1 CG2 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 TYR B 40 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 ILE B 46 CG1 CG2 CD1 REMARK 470 TYR B 47 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 59 CG1 CG2 REMARK 470 LEU B 64 CG CD1 CD2 REMARK 470 CYS B 65 SG REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 68 CG CD1 CD2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 SER B 70 OG REMARK 470 ILE B 72 CG1 CG2 CD1 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 TYR B 75 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 ASN B 77 CG OD1 ND2 REMARK 470 LEU B 82 CG CD1 CD2 REMARK 470 HIS B 95 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 96 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 102 OG REMARK 470 VAL B 103 CG1 CG2 REMARK 470 ASP B 104 CG OD1 OD2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 SER B 112 OG REMARK 470 VAL B 114 CG1 CG2 REMARK 470 LEU B 115 CG CD1 CD2 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 ASN B 117 CG OD1 ND2 REMARK 470 VAL B 118 CG1 CG2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 MET B 120 CG SD CE REMARK 470 ASN B 121 CG OD1 ND2 REMARK 470 GLN B 132 CG CD OE1 NE2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 ILE B 150 CG1 CG2 CD1 REMARK 470 ASN B 176 CG OD1 ND2 REMARK 470 ASP B 192 CG OD1 OD2 REMARK 470 ILE B 194 CG1 CG2 CD1 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 LEU B 200 CG CD1 CD2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 ILE B 202 CG1 CG2 CD1 REMARK 470 ASP B 205 CG OD1 OD2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 ILE B 225 CG1 CG2 CD1 REMARK 470 ILE B 226 CG1 CG2 CD1 REMARK 470 ILE B 233 CG1 CG2 CD1 REMARK 470 TYR B 235 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 236 CG OD1 OD2 REMARK 470 THR B 237 OG1 CG2 REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 240 CG CD1 CD2 REMARK 470 ARG B 249 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 251 CG CD CE NZ REMARK 470 ILE B 259 CG1 CG2 CD1 REMARK 470 MET B 262 CG SD CE REMARK 470 LEU B 263 CG CD1 CD2 REMARK 470 GLU B 265 CG CD OE1 OE2 REMARK 470 LYS B 270 CG CD CE NZ REMARK 470 TYR B 271 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 273 CG1 CG2 CD1 REMARK 470 PHE B 277 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 279 CG CD OE1 NE2 REMARK 470 ASP B 281 CG OD1 OD2 REMARK 470 LYS B 282 CG CD CE NZ REMARK 470 LEU B 293 CG CD1 CD2 REMARK 470 VAL B 296 CG1 CG2 REMARK 470 LYS B 298 CG CD CE NZ REMARK 470 ASN B 299 CG OD1 ND2 REMARK 470 LYS B 300 CG CD CE NZ REMARK 470 THR B 301 OG1 CG2 REMARK 470 LEU B 302 CG CD1 CD2 REMARK 470 CYS B 304 SG REMARK 470 HIS B 305 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 310 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 311 CG CD CE NZ REMARK 470 ILE B 315 CG1 CG2 CD1 REMARK 470 LEU B 316 CG CD1 CD2 REMARK 470 ASN B 317 CG OD1 ND2 REMARK 470 LEU B 318 CG CD1 CD2 REMARK 470 SER B 319 OG REMARK 470 VAL B 320 CG1 CG2 REMARK 470 LYS B 321 CG CD CE NZ REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 VAL B 336 CG1 CG2 REMARK 470 ILE B 337 CG1 CG2 CD1 REMARK 470 THR B 341 OG1 CG2 REMARK 470 PHE B 342 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 343 OG1 CG2 REMARK 470 ARG B 350 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 429 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 430 CD CE NZ REMARK 470 ILE B 431 CG1 CG2 CD1 REMARK 470 SER B 448 OG REMARK 470 SER B 451 OG REMARK 470 GLU B 452 CG CD OE1 OE2 REMARK 470 THR B 489 OG1 CG2 REMARK 470 LYS B 511 CG CD CE NZ REMARK 470 LYS B 543 CG CD CE NZ REMARK 470 GLU B 560 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 277 42.76 -96.56 REMARK 500 GLU A 279 -3.05 90.09 REMARK 500 LYS A 283 37.23 -97.50 REMARK 500 ASN A 329 144.29 179.24 REMARK 500 PHE A 338 -58.31 -130.17 REMARK 500 LYS A 359 -63.30 -97.21 REMARK 500 PRO A 361 47.48 -76.40 REMARK 500 THR A 369 -141.74 45.36 REMARK 500 SER A 382 -63.35 -91.26 REMARK 500 HIS A 451 -155.79 -139.31 REMARK 500 ASP A 464 -160.09 -167.00 REMARK 500 ASN A 466 61.25 61.61 REMARK 500 ALA A 478 -70.98 -55.69 REMARK 500 TYR A 482 -9.69 -54.47 REMARK 500 ARG A 557 -73.81 -70.63 REMARK 500 LEU A 562 -68.69 -95.77 REMARK 500 ARG A 566 74.94 -110.89 REMARK 500 ILE B 12 -162.72 -121.57 REMARK 500 LYS B 45 42.70 79.15 REMARK 500 ARG B 55 79.48 -105.29 REMARK 500 PHE B 71 -19.67 -46.40 REMARK 500 ILE B 72 -40.54 -142.82 REMARK 500 ASN B 77 105.75 -56.37 REMARK 500 ALA B 81 85.82 -164.06 REMARK 500 ASP B 104 -148.27 59.32 REMARK 500 ARG B 107 92.22 -165.00 REMARK 500 ASN B 117 72.77 46.36 REMARK 500 ASN B 138 -69.69 -99.80 REMARK 500 ASP B 205 29.29 -145.93 REMARK 500 THR B 231 32.59 -92.86 REMARK 500 LYS B 232 154.79 -49.25 REMARK 500 TYR B 235 151.34 -42.06 REMARK 500 VAL B 296 -71.44 -72.30 REMARK 500 LEU B 316 -127.78 57.42 REMARK 500 LEU B 318 149.42 -172.90 REMARK 500 MET B 331 34.71 78.09 REMARK 500 ASP B 338 155.90 179.81 REMARK 500 LYS B 376 75.57 56.65 REMARK 500 TYR B 416 -60.41 -120.71 REMARK 500 ARG B 424 163.39 -49.04 REMARK 500 ASN B 447 59.14 -112.61 REMARK 500 TYR B 453 71.04 -112.24 REMARK 500 ARG B 474 -176.03 -62.71 REMARK 500 ARG B 474 -174.66 -65.10 REMARK 500 ASP B 492 12.87 80.40 REMARK 500 PHE B 553 -167.53 -163.91 REMARK 500 ASN B 578 40.57 71.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 499 OE2 REMARK 620 2 GLU B 361 OE1 70.5 REMARK 620 3 GLU B 361 OE2 77.5 55.2 REMARK 620 N 1 2 DBREF 7BY6 A 271 569 UNP A5K9S0 A5K9S0_PLAVS 271 569 DBREF 7BY6 B 2 617 UNP A5K464 A5K464_PLAVS 2 617 SEQADV 7BY6 MET B 0 UNP A5K464 EXPRESSION TAG SEQADV 7BY6 GLY B 1 UNP A5K464 EXPRESSION TAG SEQRES 1 A 299 LEU THR TYR LEU LEU ILE LYS ASN GLU GLU TYR LYS LYS SEQRES 2 A 299 TYR GLN VAL LYS LYS TYR ASN PHE PHE SER SER GLY LYS SEQRES 3 A 299 LYS MET ASN LYS GLY ASN ILE HIS LEU LEU ILE ARG GLN SEQRES 4 A 299 MET ARG THR PHE LYS ASP VAL PHE VAL SER LEU GLY PHE SEQRES 5 A 299 GLU GLU MET ASN THR HIS ASN TYR VAL GLU SER SER PHE SEQRES 6 A 299 TRP CYS PHE ASP ALA LEU TYR ILE PRO GLN GLN HIS PRO SEQRES 7 A 299 SER ARG ASP LEU GLN ASP THR PHE PHE ILE LYS VAL PRO SEQRES 8 A 299 GLU MET CYS GLN GLU GLU PHE THR ASP GLN SER TYR ILE SEQRES 9 A 299 GLU ASN VAL LYS ARG VAL HIS SER VAL GLY ASP TYR GLY SEQRES 10 A 299 SER PHE GLY TRP ASN TYR GLN TRP GLU LEU LYS SER THR SEQRES 11 A 299 LYS LYS ASN VAL LEU ARG THR HIS THR THR ALA ASN SER SEQRES 12 A 299 CYS ARG ALA LEU PHE GLN LEU ALA LYS GLU TYR GLN LYS SEQRES 13 A 299 THR GLY SER ILE ILE PRO LYS LYS PHE PHE SER ILE ASP SEQRES 14 A 299 ARG VAL PHE ARG ASN GLU ASN LEU ASP SER THR HIS LEU SEQRES 15 A 299 ALA GLU PHE HIS GLN VAL GLU GLY LEU ILE ILE ASP ARG SEQRES 16 A 299 ASN LEU GLY LEU SER HIS LEU ILE GLY THR LEU SER ALA SEQRES 17 A 299 PHE TYR LYS TYR ILE GLY ILE SER LYS LEU ARG PHE LYS SEQRES 18 A 299 PRO THR PHE ASN PRO TYR THR GLU PRO SER MET GLU VAL SEQRES 19 A 299 TYR GLY TYR HIS GLU GLU ASN LYS LYS TRP LEU GLU VAL SEQRES 20 A 299 GLY ASN SER GLY ILE PHE ARG PRO GLU MET LEU ARG ALA SEQRES 21 A 299 MET GLY PHE PRO PRO GLU VAL SER VAL ILE ALA TRP GLY SEQRES 22 A 299 LEU SER LEU GLU ARG PRO THR MET ILE LYS TYR SER ILE SEQRES 23 A 299 ARG ASN ILE ARG ASP LEU PHE GLY TYR ARG SER VAL ILE SEQRES 1 B 618 MET GLY PRO THR ILE SER VAL HIS GLU GLU ASP LEU ILE SEQRES 2 B 618 GLU LYS LEU GLY GLU LYS ILE GLU GLU GLU LYS LEU ASN SEQRES 3 B 618 ASP ILE CYS PHE GLU PHE GLY ILE GLU ILE ASP ASP VAL SEQRES 4 B 618 GLU TYR LYS GLY GLU LYS LYS ILE TYR LYS ILE GLU VAL SEQRES 5 B 618 PRO ALA ASN ARG TYR ASP LEU VAL CYS VAL GLU GLY LEU SEQRES 6 B 618 CYS ARG ALA LEU LYS SER PHE ILE GLY LYS TYR GLU ASN SEQRES 7 B 618 VAL SER TYR ALA LEU LEU THR ASN SER GLU GLU ALA CYS SEQRES 8 B 618 VAL LYS GLU LYS HIS PHE MET ARG VAL ASP GLU SER VAL SEQRES 9 B 618 ASP GLU ARG ARG SER TYR VAL VAL SER ALA VAL LEU LYS SEQRES 10 B 618 ASN VAL LYS MET ASN GLU ASN VAL TYR ASN ASN ILE ILE SEQRES 11 B 618 GLU LEU GLN GLU LYS LEU HIS HIS ASN LEU GLY LYS LYS SEQRES 12 B 618 ARG ILE LEU LEU ALA ILE GLY ILE HIS ASP TYR ASP LYS SEQRES 13 B 618 ILE ASN PHE PRO VAL ALA TYR LYS PHE GLU GLU LYS GLU SEQRES 14 B 618 LYS ILE ASN PHE ILE PRO LEU ASN GLU THR GLN ASN VAL SEQRES 15 B 618 ASN GLY ASN ASN PHE ILE ASN PHE TYR GLN ASP ASN ILE SEQRES 16 B 618 ASN LEU LYS SER TYR LEU LYS ILE ILE SER ASP PHE GLU SEQRES 17 B 618 LYS PHE PRO VAL ILE VAL ASP ALA GLY GLY GLN ILE LEU SEQRES 18 B 618 SER LEU PRO PRO ILE ILE ASN CYS ASP TYR THR LYS ILE SEQRES 19 B 618 THR TYR ASP THR ARG ASN LEU PHE ILE GLU CYS THR ALA SEQRES 20 B 618 ILE ASP ARG ASN LYS ALA GLU ILE ALA VAL ASN ILE ILE SEQRES 21 B 618 CYS SER MET LEU SER GLU TYR CYS THR PRO LYS TYR SER SEQRES 22 B 618 ILE HIS SER PHE PHE VAL GLN TYR ASP LYS ASN HIS LYS SEQRES 23 B 618 ALA GLU LYS GLY ASN GLY TYR LEU TYR PRO VAL PHE LYS SEQRES 24 B 618 ASN LYS THR LEU THR CYS HIS MET ASP TYR VAL ARG LYS SEQRES 25 B 618 LEU SER GLY ILE LEU ASN LEU SER VAL LYS ASP VAL GLU SEQRES 26 B 618 PRO LEU LEU LYS LYS MET MET ILE THR SER LYS VAL ILE SEQRES 27 B 618 ASP SER SER THR PHE THR VAL ASP VAL PRO PHE TYR ARG SEQRES 28 B 618 SER ASP ILE MET HIS PHE CYS ASP ILE VAL GLU ASP ILE SEQRES 29 B 618 ALA ILE ALA TYR GLY TYR GLY ASN ILE VAL SER GLU LYS SEQRES 30 B 618 ILE GLU ILE ALA LYS LYS ASN SER LEU SER ALA CYS THR SEQRES 31 B 618 GLU LEU PHE ARG ASN VAL LEU ALA GLU CYS THR TYR THR SEQRES 32 B 618 GLU VAL MET THR ASN ALA LEU LEU SER LYS ARG GLU ASN SEQRES 33 B 618 TYR ASP CYS MET LEU ARG LYS HIS ARG SER TYR ASP ASP SEQRES 34 B 618 ARG LYS ILE ASN LEU ASP GLU TYR ASN PRO LEU ALA PRO SEQRES 35 B 618 PRO VAL GLN ILE MET ASN SER LYS THR SER GLU TYR GLU SEQRES 36 B 618 ILE VAL ARG THR SER LEU ILE VAL ASN MET LEU LYS PHE SEQRES 37 B 618 VAL SER ALA ASN LYS HIS ARG GLU LEU PRO LEU ARG PHE SEQRES 38 B 618 PHE GLU ILE GLY ASP VAL SER TYR THR THR TYR ASP ARG SEQRES 39 B 618 THR ASP THR ASN ALA VAL ASN LYS ARG TYR LEU SER VAL SEQRES 40 B 618 ILE PHE ALA ASP LYS PHE THR ALA GLY LEU GLU GLU ALA SEQRES 41 B 618 HIS GLY MET LEU GLU THR VAL LEU LYS GLU PHE GLN LEU SEQRES 42 B 618 PHE SER ASP TYR LYS ILE GLU GLU LYS SER LYS GLU ASN SEQRES 43 B 618 VAL ALA ILE ARG SER ASP VAL PHE TYR LYS LEU VAL PRO SEQRES 44 B 618 LYS GLU ASP PRO SER PHE LEU ASN GLU ARG VAL VAL ASP SEQRES 45 B 618 ILE VAL LEU CYS PRO HIS ASN LEU LYS PHE GLY ILE MET SEQRES 46 B 618 GLY ILE ILE HIS PRO LYS VAL LEU GLU ASN PHE SER ILE SEQRES 47 B 618 ASP ILE PRO VAL SER VAL ILE GLU ILE ASN ILE GLU THR SEQRES 48 B 618 ILE MET ASP VAL LEU MET MET HET FB9 A 601 42 HET MG B 701 1 HETNAM FB9 (3S,4R,8R,9R,10S)-N-(4-CYCLOPROPYLOXYPHENYL)-10- HETNAM 2 FB9 (METHOXYMETHYL)-3,4-BIS(OXIDANYL)-9-[4-(2- HETNAM 3 FB9 PHENYLETHYNYL)PHENYL]-1,6-DIAZABICYCLO[6.2.0]DECANE-6- HETNAM 4 FB9 CARBOXAMIDE HETNAM MG MAGNESIUM ION FORMUL 3 FB9 C34 H37 N3 O5 FORMUL 4 MG MG 2+ HELIX 1 AA1 HIS A 304 LEU A 320 1 17 HELIX 2 AA2 SER A 334 PHE A 338 1 5 HELIX 3 AA3 HIS A 347 ASP A 351 5 5 HELIX 4 AA4 ASP A 370 GLY A 384 1 15 HELIX 5 AA5 GLU A 396 LYS A 401 1 6 HELIX 6 AA6 THR A 409 GLY A 428 1 20 HELIX 7 AA7 GLY A 468 TYR A 482 1 15 HELIX 8 AA8 ARG A 524 GLY A 532 1 9 HELIX 9 AA9 LEU A 546 TYR A 554 1 9 HELIX 10 AB1 ASN A 558 LEU A 562 5 5 HELIX 11 AB2 GLU B 20 GLY B 32 1 13 HELIX 12 AB3 ARG B 55 VAL B 59 5 5 HELIX 13 AB4 CYS B 60 GLY B 73 1 14 HELIX 14 AB5 GLU B 101 ASP B 104 5 4 HELIX 15 AB6 GLU B 122 ASN B 138 1 17 HELIX 16 AB7 ASP B 154 ILE B 156 5 3 HELIX 17 AB8 GLU B 166 LYS B 169 5 4 HELIX 18 AB9 ASN B 185 GLN B 191 1 7 HELIX 19 AC1 LEU B 196 SER B 204 1 9 HELIX 20 AC2 ASP B 248 GLU B 265 1 18 HELIX 21 AC3 HIS B 305 GLY B 314 1 10 HELIX 22 AC4 SER B 319 ASP B 322 5 4 HELIX 23 AC5 VAL B 323 MET B 330 1 8 HELIX 24 AC6 HIS B 355 GLY B 368 1 14 HELIX 25 AC7 ASN B 383 GLU B 398 1 16 HELIX 26 AC8 SER B 411 TYR B 416 1 6 HELIX 27 AC9 LEU B 460 LYS B 472 1 13 HELIX 28 AD1 GLU B 517 PHE B 530 1 14 HELIX 29 AD2 SER B 534 GLU B 544 1 11 HELIX 30 AD3 HIS B 588 PHE B 595 1 8 HELIX 31 AD4 ILE B 608 MET B 612 1 5 HELIX 32 AD5 ASP B 613 LEU B 615 5 3 SHEET 1 AA1 7 GLU A 323 GLU A 324 0 SHEET 2 AA1 7 LYS A 433 PHE A 442 1 O LYS A 434 N GLU A 323 SHEET 3 AA1 7 GLU A 454 ARG A 465 -1 O GLN A 457 N ASP A 439 SHEET 4 AA1 7 VAL A 537 SER A 545 -1 O LEU A 544 N VAL A 458 SHEET 5 AA1 7 TRP A 514 PHE A 523 -1 N ASN A 519 O GLY A 543 SHEET 6 AA1 7 THR A 498 TYR A 507 -1 N GLY A 506 O LEU A 515 SHEET 7 AA1 7 LEU A 488 PRO A 492 -1 N ARG A 489 O TYR A 505 SHEET 1 AA2 2 VAL A 331 SER A 333 0 SHEET 2 AA2 2 ASN A 403 LEU A 405 -1 O VAL A 404 N GLU A 332 SHEET 1 AA3 3 THR B 3 VAL B 6 0 SHEET 2 AA3 3 ILE B 46 GLU B 50 -1 O TYR B 47 N VAL B 6 SHEET 3 AA3 3 GLU B 34 GLU B 39 -1 N ASP B 37 O LYS B 48 SHEET 1 AA4 6 ILE B 219 SER B 221 0 SHEET 2 AA4 6 PHE B 209 ASP B 214 -1 N ILE B 212 O LEU B 220 SHEET 3 AA4 6 VAL B 160 GLU B 165 -1 N GLU B 165 O PHE B 209 SHEET 4 AA4 6 MET B 97 VAL B 99 1 N ARG B 98 O TYR B 162 SHEET 5 AA4 6 VAL B 278 TYR B 280 1 O GLN B 279 N MET B 97 SHEET 6 AA4 6 GLY B 291 TYR B 292 -1 O TYR B 292 N VAL B 278 SHEET 1 AA5 3 TYR B 109 LEU B 115 0 SHEET 2 AA5 3 LEU B 240 ALA B 246 -1 O ILE B 242 N ALA B 113 SHEET 3 AA5 3 LEU B 146 ASP B 152 -1 N HIS B 151 O PHE B 241 SHEET 1 AA6 2 ASN B 171 PHE B 172 0 SHEET 2 AA6 2 VAL B 181 ASN B 182 -1 O VAL B 181 N PHE B 172 SHEET 1 AA7 2 THR B 333 ASP B 338 0 SHEET 2 AA7 2 THR B 341 ASP B 345 -1 O ASP B 345 N THR B 333 SHEET 1 AA8 7 THR B 402 VAL B 404 0 SHEET 2 AA8 7 LEU B 478 THR B 489 1 O ARG B 479 N THR B 402 SHEET 3 AA8 7 ALA B 498 ALA B 509 -1 O SER B 505 N GLU B 482 SHEET 4 AA8 7 VAL B 601 ASN B 607 -1 O ILE B 604 N VAL B 506 SHEET 5 AA8 7 LEU B 579 ILE B 587 -1 N ILE B 583 O GLU B 605 SHEET 6 AA8 7 PHE B 564 CYS B 575 -1 N ILE B 572 O PHE B 581 SHEET 7 AA8 7 PHE B 553 PRO B 558 -1 N VAL B 557 O ASP B 571 SHEET 1 AA9 2 LEU B 409 LEU B 410 0 SHEET 2 AA9 2 ILE B 455 VAL B 456 -1 O ILE B 455 N LEU B 410 LINK OE2 GLU A 499 MG MG B 701 1555 1555 2.46 LINK OE1 GLU B 361 MG MG B 701 1555 1555 2.15 LINK OE2 GLU B 361 MG MG B 701 1555 1555 2.56 CISPEP 1 GLU A 499 PRO A 500 0 -6.09 CISPEP 2 PHE B 158 PRO B 159 0 0.99 CISPEP 3 TYR B 294 PRO B 295 0 -10.69 CISPEP 4 LEU B 476 PRO B 477 0 -3.05 CISPEP 5 CYS B 575 PRO B 576 0 5.87 CRYST1 136.523 74.071 121.682 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007325 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008218 0.00000