HEADER HYDROLASE 24-APR-20 7BYS TITLE CRYSTAL STRUCTURE OF EXO-BETA-1,3-GALACTANASE FROM PHANEROCHAETE TITLE 2 CHRYSOSPORIUM PC1,3GAL43A APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTAN 1,3-BETA-GALACTOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EXO-BETA-1,3-GALACTANASE; COMPND 5 EC: 3.2.1.145; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHANEROCHAETE CHRYSOSPORIUM; SOURCE 3 ORGANISM_COMMON: WHITE-ROT FUNGUS; SOURCE 4 ORGANISM_TAXID: 5306; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZAA KEYWDS GLYCOSIDE HYDROLASE FAMILY 43, EXO-BETA-1, 3-GALACTANASE, KEYWDS 2 ARABINOGALACTAN DEGRADE, APO FORM, HYDROLASE, CARBOHYDRATE BINDING KEYWDS 3 MODULE FAMILY 35 EXPDTA X-RAY DIFFRACTION AUTHOR K.MATSUYAMA,T.ISHIDA,N.KISHINE,Z.FUJIMOTO,K.IGARASHI,S.KANEKO REVDAT 2 13-JAN-21 7BYS 1 JRNL REVDAT 1 04-NOV-20 7BYS 0 JRNL AUTH K.MATSUYAMA,N.KISHINE,Z.FUJIMOTO,N.SUNAGAWA,T.KOTAKE, JRNL AUTH 2 Y.TSUMURAYA,M.SAMEJIMA,K.IGARASHI,S.KANEKO JRNL TITL UNIQUE ACTIVE-SITE AND SUBSITE FEATURES IN THE JRNL TITL 2 ARABINOGALACTAN-DEGRADING GH43 EXO-BETA-1,3-GALACTANASE FROM JRNL TITL 3 PHANEROCHAETE CHRYSOSPORIUM . JRNL REF J.BIOL.CHEM. V. 295 18539 2020 JRNL REFN ESSN 1083-351X JRNL PMID 33093171 JRNL DOI 10.1074/JBC.RA120.016149 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_356 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 136655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 8.0000 - 4.1400 0.98 4444 224 0.1207 0.1468 REMARK 3 2 4.1400 - 3.3700 0.99 4419 253 0.1181 0.1368 REMARK 3 3 3.3700 - 2.9600 0.99 4494 240 0.1352 0.1745 REMARK 3 4 2.9600 - 2.7100 0.99 4397 261 0.1531 0.2158 REMARK 3 5 2.7100 - 2.5200 0.98 4430 247 0.1549 0.1803 REMARK 3 6 2.5200 - 2.3700 0.98 4398 244 0.1564 0.1860 REMARK 3 7 2.3700 - 2.2600 0.98 4409 265 0.1555 0.1816 REMARK 3 8 2.2600 - 2.1600 0.98 4452 224 0.1517 0.1961 REMARK 3 9 2.1600 - 2.0800 0.98 4414 220 0.1511 0.1794 REMARK 3 10 2.0800 - 2.0100 0.98 4406 231 0.1510 0.1652 REMARK 3 11 2.0100 - 1.9500 0.97 4398 190 0.1587 0.1919 REMARK 3 12 1.9500 - 1.8900 0.97 4413 218 0.1633 0.1888 REMARK 3 13 1.8900 - 1.8400 0.97 4338 234 0.1738 0.1867 REMARK 3 14 1.8400 - 1.8000 0.97 4386 250 0.1705 0.1979 REMARK 3 15 1.8000 - 1.7600 0.97 4312 230 0.1711 0.1877 REMARK 3 16 1.7600 - 1.7200 0.97 4413 209 0.1690 0.1885 REMARK 3 17 1.7200 - 1.6900 0.96 4274 247 0.1735 0.2344 REMARK 3 18 1.6900 - 1.6600 0.96 4385 250 0.1750 0.1998 REMARK 3 19 1.6600 - 1.6300 0.96 4329 221 0.1734 0.2275 REMARK 3 20 1.6300 - 1.6000 0.96 4374 242 0.1807 0.2221 REMARK 3 21 1.6000 - 1.5700 0.96 4297 226 0.1814 0.2194 REMARK 3 22 1.5700 - 1.5500 0.96 4283 220 0.1890 0.2136 REMARK 3 23 1.5500 - 1.5300 0.96 4387 233 0.1879 0.2198 REMARK 3 24 1.5300 - 1.5100 0.95 4263 234 0.1959 0.2316 REMARK 3 25 1.5100 - 1.4900 0.95 4309 221 0.1970 0.2453 REMARK 3 26 1.4900 - 1.4700 0.95 4229 216 0.2086 0.2340 REMARK 3 27 1.4700 - 1.4500 0.94 4196 182 0.2130 0.2375 REMARK 3 28 1.4500 - 1.4300 0.92 4195 224 0.2185 0.2426 REMARK 3 29 1.4300 - 1.4100 0.89 4031 223 0.2259 0.2716 REMARK 3 30 1.4100 - 1.4000 0.82 3641 183 0.2321 0.2783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BYS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-08; 26-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 95; 95 REMARK 200 PH : 5.5; 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A; BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90646; REMARK 200 0.97882,0.97950,0.98300,0.96400 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 136692 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37000 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MOLREP, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M AMMONIUM SULFATE, 0.1 M CITRATE REMARK 280 BUFFER PH 5.5., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K. REMARK 280 16% (W/V) POLYETHYLENE GLYCOL (PEG) 10000 95 MM AMMONIUM SULFATE REMARK 280 95 MM BIS-TRIS 4.8% (V/V) GLYCEROL, PH 5.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 297 O HOH A 601 2.12 REMARK 500 O HOH A 637 O HOH A 945 2.12 REMARK 500 O HOH A 893 O HOH A 1241 2.12 REMARK 500 O HOH B 877 O HOH B 1080 2.13 REMARK 500 O HOH A 1026 O HOH A 1151 2.16 REMARK 500 ND2 ASN A 437 O HOH A 602 2.16 REMARK 500 O HOH B 640 O HOH B 1121 2.16 REMARK 500 O HOH A 893 O HOH A 1140 2.17 REMARK 500 O HOH B 906 O HOH B 1097 2.17 REMARK 500 OG SER A 299 OG SER B 299 2.18 REMARK 500 O HOH B 917 O HOH B 1037 2.19 REMARK 500 NZ LYS B 419 O HOH B 601 2.19 REMARK 500 O6 NAG A 501 O HOH A 603 2.19 REMARK 500 O HOH B 959 O HOH B 1171 2.19 REMARK 500 O HOH A 647 O HOH A 1011 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 698 O HOH B 810 1655 2.07 REMARK 500 O HOH A 620 O HOH B 840 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 58.56 -147.52 REMARK 500 ARG A 157 -108.46 -114.27 REMARK 500 TYR A 261 73.36 51.91 REMARK 500 ALA A 265 -46.62 -130.53 REMARK 500 ASN A 273 -149.57 -126.36 REMARK 500 LEU A 285 67.21 -154.80 REMARK 500 ALA B 40 58.75 -149.53 REMARK 500 ARG B 157 -106.85 -114.18 REMARK 500 TYR B 261 72.96 52.88 REMARK 500 ALA B 265 -48.69 -130.24 REMARK 500 ASN B 273 -151.50 -118.68 REMARK 500 LEU B 285 70.52 -154.74 REMARK 500 ARG B 388 -166.77 -114.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1251 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B1191 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 329 OE1 REMARK 620 2 GLU A 331 OE1 98.0 REMARK 620 3 GLU A 331 OE2 81.8 51.9 REMARK 620 4 SER A 348 O 84.8 132.9 82.5 REMARK 620 5 LYS A 351 O 164.5 79.1 84.5 86.2 REMARK 620 6 ASP A 443 O 82.8 77.0 123.3 149.1 111.1 REMARK 620 7 ASP A 443 OD1 104.2 139.1 164.3 83.6 87.3 72.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 329 OE1 REMARK 620 2 GLU B 331 OE1 97.0 REMARK 620 3 GLU B 331 OE2 84.1 52.0 REMARK 620 4 SER B 348 O 86.2 132.0 81.1 REMARK 620 5 LYS B 351 O 165.6 80.8 83.4 84.8 REMARK 620 6 ASP B 443 O 81.0 76.6 123.8 150.2 112.0 REMARK 620 7 ASP B 443 OD1 102.5 139.8 163.7 84.5 87.8 72.2 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7BYT RELATED DB: PDB REMARK 900 RELATED ID: 7BYV RELATED DB: PDB REMARK 900 RELATED ID: 7BYX RELATED DB: PDB DBREF 7BYS A 22 448 UNP Q50KB2 Q50KB2_PHACH 22 448 DBREF 7BYS B 22 448 UNP Q50KB2 Q50KB2_PHACH 22 448 SEQRES 1 A 427 ASN GLN ILE VAL SER GLY ALA ALA TRP THR ASP THR ALA SEQRES 2 A 427 GLY ASN THR ILE GLN ALA HIS GLY ALA GLY ILE LEU GLN SEQRES 3 A 427 VAL GLY SER THR PHE TYR TRP PHE GLY GLU ASP LYS SER SEQRES 4 A 427 HIS ASN SER ALA LEU PHE LYS ALA VAL SER CYS TYR THR SEQRES 5 A 427 SER SER ASP LEU VAL ASN TRP SER ARG GLN ASN ASP ALA SEQRES 6 A 427 LEU SER PRO ILE ALA GLY THR MET ILE SER THR SER ASN SEQRES 7 A 427 VAL VAL GLU ARG PRO LYS VAL ILE PHE ASN GLN LYS ASN SEQRES 8 A 427 SER GLU TYR VAL MET TRP PHE HIS SER ASP SER SER ASN SEQRES 9 A 427 TYR GLY ALA ALA MET VAL GLY VAL ALA THR ALA LYS THR SEQRES 10 A 427 PRO CYS GLY PRO TYR THR TYR LYS GLY SER PHE LYS PRO SEQRES 11 A 427 LEU GLY ALA ASP SER ARG ASP GLU SER ILE PHE GLN ASP SEQRES 12 A 427 ASP ASP SER ALA GLN THR ALA TYR LEU LEU TYR ALA SER SEQRES 13 A 427 ASP ASN ASN GLN ASN PHE LYS ILE SER ARG LEU ASP ALA SEQRES 14 A 427 ASN TYR TYR ASN VAL THR ALA GLN VAL SER VAL MET ASN SEQRES 15 A 427 GLY ALA THR LEU GLU ALA PRO GLY ILE VAL LYS HIS ASN SEQRES 16 A 427 GLY GLU TYR PHE LEU ILE ALA SER HIS THR SER GLY TRP SEQRES 17 A 427 ALA PRO ASN PRO ASN LYS TRP PHE SER ALA SER SER LEU SEQRES 18 A 427 ALA GLY PRO TRP SER ALA GLN GLN ASP ILE ALA PRO SER SEQRES 19 A 427 ALA THR ARG THR TRP TYR SER GLN ASN ALA PHE ASP LEU SEQRES 20 A 427 PRO LEU GLY SER ASN ALA ILE TYR MET GLY ASP ARG TRP SEQRES 21 A 427 ARG PRO SER LEU LEU GLY SER SER ARG TYR ILE TRP TYR SEQRES 22 A 427 PRO LEU ASP PHE SER SER GLY ALA PRO GLN ILE VAL HIS SEQRES 23 A 427 ALA ASP VAL TRP SER VAL ASN VAL GLN ALA GLY THR TYR SEQRES 24 A 427 SER VAL ALA SER GLY THR SER TYR GLU ALA GLU ASN GLY SEQRES 25 A 427 GLN ARG GLY GLY SER SER THR ILE LEU SER GLY SER GLY SEQRES 26 A 427 PHE SER GLY GLY LYS ALA VAL GLY TYR LEU GLY HIS GLY SEQRES 27 A 427 GLY THR VAL THR ILE ASN ASN VAL GLN SER ASN GLY GLY SEQRES 28 A 427 SER HIS TRP VAL ALA LEU TYR PHE ALA ASN GLY ASP SER SEQRES 29 A 427 THR TYR ARG ASN VAL THR VAL SER VAL ASN GLY GLY PRO SEQRES 30 A 427 SER VAL LEU VAL ASP GLN PRO ASP SER GLY GLY GLY ASN SEQRES 31 A 427 VAL VAL ILE SER VAL PRO VAL LYS LEU ASN LEU ASN SER SEQRES 32 A 427 GLY GLU ASN SER ILE THR PHE GLY SER GLY GLN SER ASN SEQRES 33 A 427 TYR ALA ALA ASP LEU ASP LYS ILE ILE VAL TYR SEQRES 1 B 427 ASN GLN ILE VAL SER GLY ALA ALA TRP THR ASP THR ALA SEQRES 2 B 427 GLY ASN THR ILE GLN ALA HIS GLY ALA GLY ILE LEU GLN SEQRES 3 B 427 VAL GLY SER THR PHE TYR TRP PHE GLY GLU ASP LYS SER SEQRES 4 B 427 HIS ASN SER ALA LEU PHE LYS ALA VAL SER CYS TYR THR SEQRES 5 B 427 SER SER ASP LEU VAL ASN TRP SER ARG GLN ASN ASP ALA SEQRES 6 B 427 LEU SER PRO ILE ALA GLY THR MET ILE SER THR SER ASN SEQRES 7 B 427 VAL VAL GLU ARG PRO LYS VAL ILE PHE ASN GLN LYS ASN SEQRES 8 B 427 SER GLU TYR VAL MET TRP PHE HIS SER ASP SER SER ASN SEQRES 9 B 427 TYR GLY ALA ALA MET VAL GLY VAL ALA THR ALA LYS THR SEQRES 10 B 427 PRO CYS GLY PRO TYR THR TYR LYS GLY SER PHE LYS PRO SEQRES 11 B 427 LEU GLY ALA ASP SER ARG ASP GLU SER ILE PHE GLN ASP SEQRES 12 B 427 ASP ASP SER ALA GLN THR ALA TYR LEU LEU TYR ALA SER SEQRES 13 B 427 ASP ASN ASN GLN ASN PHE LYS ILE SER ARG LEU ASP ALA SEQRES 14 B 427 ASN TYR TYR ASN VAL THR ALA GLN VAL SER VAL MET ASN SEQRES 15 B 427 GLY ALA THR LEU GLU ALA PRO GLY ILE VAL LYS HIS ASN SEQRES 16 B 427 GLY GLU TYR PHE LEU ILE ALA SER HIS THR SER GLY TRP SEQRES 17 B 427 ALA PRO ASN PRO ASN LYS TRP PHE SER ALA SER SER LEU SEQRES 18 B 427 ALA GLY PRO TRP SER ALA GLN GLN ASP ILE ALA PRO SER SEQRES 19 B 427 ALA THR ARG THR TRP TYR SER GLN ASN ALA PHE ASP LEU SEQRES 20 B 427 PRO LEU GLY SER ASN ALA ILE TYR MET GLY ASP ARG TRP SEQRES 21 B 427 ARG PRO SER LEU LEU GLY SER SER ARG TYR ILE TRP TYR SEQRES 22 B 427 PRO LEU ASP PHE SER SER GLY ALA PRO GLN ILE VAL HIS SEQRES 23 B 427 ALA ASP VAL TRP SER VAL ASN VAL GLN ALA GLY THR TYR SEQRES 24 B 427 SER VAL ALA SER GLY THR SER TYR GLU ALA GLU ASN GLY SEQRES 25 B 427 GLN ARG GLY GLY SER SER THR ILE LEU SER GLY SER GLY SEQRES 26 B 427 PHE SER GLY GLY LYS ALA VAL GLY TYR LEU GLY HIS GLY SEQRES 27 B 427 GLY THR VAL THR ILE ASN ASN VAL GLN SER ASN GLY GLY SEQRES 28 B 427 SER HIS TRP VAL ALA LEU TYR PHE ALA ASN GLY ASP SER SEQRES 29 B 427 THR TYR ARG ASN VAL THR VAL SER VAL ASN GLY GLY PRO SEQRES 30 B 427 SER VAL LEU VAL ASP GLN PRO ASP SER GLY GLY GLY ASN SEQRES 31 B 427 VAL VAL ILE SER VAL PRO VAL LYS LEU ASN LEU ASN SER SEQRES 32 B 427 GLY GLU ASN SER ILE THR PHE GLY SER GLY GLN SER ASN SEQRES 33 B 427 TYR ALA ALA ASP LEU ASP LYS ILE ILE VAL TYR HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG A 501 14 HET NAG A 502 14 HET CA A 503 1 HET CIT A 504 13 HET NAG B 501 14 HET CA B 505 1 HET CIT B 506 13 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM CIT CITRIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 6 CA 2(CA 2+) FORMUL 7 CIT 2(C6 H8 O7) FORMUL 11 HOH *1242(H2 O) HELIX 1 AA1 LYS A 150 ALA A 154 5 5 HELIX 2 AA2 PRO A 254 ALA A 256 5 3 HELIX 3 AA3 THR A 257 SER A 262 1 6 HELIX 4 AA4 ARG A 282 SER A 289 5 8 HELIX 5 AA5 GLU A 331 GLY A 333 5 3 HELIX 6 AA6 PHE A 347 GLY A 349 5 3 HELIX 7 AA7 LYS B 150 ALA B 154 5 5 HELIX 8 AA8 PRO B 254 ALA B 256 5 3 HELIX 9 AA9 THR B 257 SER B 262 1 6 HELIX 10 AB1 ARG B 282 SER B 289 5 8 HELIX 11 AB2 GLU B 331 GLY B 333 5 3 HELIX 12 AB3 PHE B 347 GLY B 349 5 3 SHEET 1 AA1 4 HIS A 41 VAL A 48 0 SHEET 2 AA1 4 THR A 51 GLU A 57 -1 O GLU A 57 N HIS A 41 SHEET 3 AA1 4 VAL A 69 SER A 74 -1 O SER A 74 N PHE A 52 SHEET 4 AA1 4 SER A 81 ARG A 82 -1 O SER A 81 N THR A 73 SHEET 1 AA2 4 VAL A 100 ASN A 109 0 SHEET 2 AA2 4 GLU A 114 ASP A 122 -1 O GLU A 114 N ASN A 109 SHEET 3 AA2 4 MET A 130 ALA A 136 -1 O ALA A 134 N MET A 117 SHEET 4 AA2 4 THR A 144 PHE A 149 -1 O LYS A 146 N VAL A 133 SHEET 1 AA3 4 GLU A 159 GLN A 163 0 SHEET 2 AA3 4 ALA A 171 SER A 177 -1 O LEU A 174 N SER A 160 SHEET 3 AA3 4 ASN A 182 LEU A 188 -1 O LYS A 184 N TYR A 175 SHEET 4 AA3 4 VAL A 195 MET A 202 -1 O MET A 202 N PHE A 183 SHEET 1 AA4 4 LEU A 207 HIS A 215 0 SHEET 2 AA4 4 GLU A 218 HIS A 225 -1 O ILE A 222 N GLY A 211 SHEET 3 AA4 4 LYS A 235 ALA A 239 -1 O LYS A 235 N ALA A 223 SHEET 4 AA4 4 GLN A 250 ASP A 251 -1 O GLN A 250 N TRP A 236 SHEET 1 AA5 4 GLN A 263 LEU A 270 0 SHEET 2 AA5 4 ASN A 273 ARG A 280 -1 O ASN A 273 N LEU A 270 SHEET 3 AA5 4 ARG A 290 ASP A 297 -1 O LEU A 296 N ALA A 274 SHEET 4 AA5 4 GLN A 304 ILE A 305 -1 O GLN A 304 N ASP A 297 SHEET 1 AA6 2 TRP A 311 ASN A 314 0 SHEET 2 AA6 2 THR A 319 VAL A 322 -1 O SER A 321 N SER A 312 SHEET 1 AA7 4 THR A 326 GLU A 329 0 SHEET 2 AA7 4 ASP A 441 VAL A 447 -1 O ILE A 445 N TYR A 328 SHEET 3 AA7 4 GLY A 360 ALA A 381 -1 N TYR A 379 O ASP A 443 SHEET 4 AA7 4 GLN A 334 GLY A 337 -1 N GLN A 334 O THR A 363 SHEET 1 AA8 6 THR A 326 GLU A 329 0 SHEET 2 AA8 6 ASP A 441 VAL A 447 -1 O ILE A 445 N TYR A 328 SHEET 3 AA8 6 GLY A 360 ALA A 381 -1 N TYR A 379 O ASP A 443 SHEET 4 AA8 6 VAL A 413 PHE A 431 -1 O LEU A 420 N HIS A 374 SHEET 5 AA8 6 ARG A 388 VAL A 394 -1 N SER A 393 O THR A 430 SHEET 6 AA8 6 VAL A 400 GLN A 404 -1 O GLN A 404 N ARG A 388 SHEET 1 AA9 2 THR A 340 SER A 343 0 SHEET 2 AA9 2 LYS A 351 GLY A 354 -1 O ALA A 352 N LEU A 342 SHEET 1 AB1 4 HIS B 41 VAL B 48 0 SHEET 2 AB1 4 THR B 51 GLU B 57 -1 O TYR B 53 N LEU B 46 SHEET 3 AB1 4 VAL B 69 SER B 74 -1 O SER B 74 N PHE B 52 SHEET 4 AB1 4 SER B 81 ARG B 82 -1 O SER B 81 N THR B 73 SHEET 1 AB2 4 VAL B 100 ASN B 109 0 SHEET 2 AB2 4 GLU B 114 ASP B 122 -1 O GLU B 114 N ASN B 109 SHEET 3 AB2 4 MET B 130 ALA B 136 -1 O ALA B 134 N MET B 117 SHEET 4 AB2 4 THR B 144 PHE B 149 -1 O LYS B 146 N VAL B 133 SHEET 1 AB3 4 GLU B 159 GLN B 163 0 SHEET 2 AB3 4 ALA B 171 SER B 177 -1 O LEU B 174 N SER B 160 SHEET 3 AB3 4 ASN B 182 LEU B 188 -1 O LYS B 184 N TYR B 175 SHEET 4 AB3 4 VAL B 195 MET B 202 -1 O VAL B 199 N ILE B 185 SHEET 1 AB4 4 LEU B 207 HIS B 215 0 SHEET 2 AB4 4 GLU B 218 HIS B 225 -1 O ILE B 222 N GLY B 211 SHEET 3 AB4 4 LYS B 235 ALA B 239 -1 O LYS B 235 N ALA B 223 SHEET 4 AB4 4 GLN B 250 ASP B 251 -1 O GLN B 250 N TRP B 236 SHEET 1 AB5 4 GLN B 263 LEU B 270 0 SHEET 2 AB5 4 ASN B 273 ARG B 280 -1 O ASN B 273 N LEU B 270 SHEET 3 AB5 4 ARG B 290 ASP B 297 -1 O LEU B 296 N ALA B 274 SHEET 4 AB5 4 GLN B 304 ILE B 305 -1 O GLN B 304 N ASP B 297 SHEET 1 AB6 2 TRP B 311 ASN B 314 0 SHEET 2 AB6 2 THR B 319 VAL B 322 -1 O THR B 319 N ASN B 314 SHEET 1 AB7 4 THR B 326 GLU B 329 0 SHEET 2 AB7 4 ASP B 441 VAL B 447 -1 O VAL B 447 N THR B 326 SHEET 3 AB7 4 GLY B 372 ALA B 381 -1 N TYR B 379 O LYS B 444 SHEET 4 AB7 4 VAL B 413 LEU B 422 -1 O VAL B 416 N LEU B 378 SHEET 1 AB8 5 GLN B 334 GLY B 336 0 SHEET 2 AB8 5 THR B 361 SER B 369 -1 O THR B 363 N GLN B 334 SHEET 3 AB8 5 GLY B 425 PHE B 431 -1 O ILE B 429 N ILE B 364 SHEET 4 AB8 5 ARG B 388 VAL B 394 -1 N SER B 393 O THR B 430 SHEET 5 AB8 5 VAL B 400 GLN B 404 -1 O GLN B 404 N ARG B 388 SHEET 1 AB9 2 THR B 340 SER B 343 0 SHEET 2 AB9 2 LYS B 351 GLY B 354 -1 O ALA B 352 N LEU B 342 SSBOND 1 CYS A 71 CYS A 140 1555 1555 2.02 SSBOND 2 CYS B 71 CYS B 140 1555 1555 2.04 LINK ND2 ASN A 194 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 389 C1 NAG A 502 1555 1555 1.43 LINK ND2 ASN B 79 C1 NAG B 501 1555 1555 1.44 LINK ND2 ASN B 389 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.37 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.38 LINK OE1 GLU A 329 CA CA A 503 1555 1555 2.31 LINK OE1 GLU A 331 CA CA A 503 1555 1555 2.48 LINK OE2 GLU A 331 CA CA A 503 1555 1555 2.56 LINK O SER A 348 CA CA A 503 1555 1555 2.39 LINK O LYS A 351 CA CA A 503 1555 1555 2.35 LINK O ASP A 443 CA CA A 503 1555 1555 2.55 LINK OD1 ASP A 443 CA CA A 503 1555 1555 2.32 LINK OE1 GLU B 329 CA CA B 505 1555 1555 2.31 LINK OE1 GLU B 331 CA CA B 505 1555 1555 2.44 LINK OE2 GLU B 331 CA CA B 505 1555 1555 2.55 LINK O SER B 348 CA CA B 505 1555 1555 2.42 LINK O LYS B 351 CA CA B 505 1555 1555 2.35 LINK O ASP B 443 CA CA B 505 1555 1555 2.56 LINK OD1 ASP B 443 CA CA B 505 1555 1555 2.31 CISPEP 1 GLY A 141 PRO A 142 0 7.19 CISPEP 2 GLY A 244 PRO A 245 0 3.56 CISPEP 3 GLY B 141 PRO B 142 0 5.89 CISPEP 4 GLY B 244 PRO B 245 0 0.54 CRYST1 40.470 66.262 74.021 72.03 84.68 82.15 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024710 -0.003407 -0.001341 0.00000 SCALE2 0.000000 0.015234 -0.004790 0.00000 SCALE3 0.000000 0.000000 0.014223 0.00000