HEADER CHAPERONE 30-APR-20 7C05 TITLE CRYSTAL STRUCTURE OF HUMAN TRAP1 WITH DN203495 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSP 75,TNFR-ASSOCIATED PROTEIN 1,TUMOR NECROSIS FACTOR TYPE COMPND 5 1 RECEPTOR-ASSOCIATED PROTEIN,TRAP-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAP1, HSP75; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRAP1, SELECTIVITY, MITOCHONDRIA, HSP90, ANTICANCER, DRUG, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR D.KIM,D.KIM,S.Y.KIM,J.H.LEE,B.H.KANG,S.KANG,C.LEE REVDAT 2 29-NOV-23 7C05 1 REMARK REVDAT 1 08-JUL-20 7C05 0 JRNL AUTH D.KIM,S.Y.KIM,D.KIM,N.G.YOON,J.YUN,K.B.HONG,C.LEE,J.H.LEE, JRNL AUTH 2 B.H.KANG,S.KANG JRNL TITL DEVELOPMENT OF PYRAZOLO[3,4-D]PYRIMIDINE-6-AMINE-BASED TRAP1 JRNL TITL 2 INHIBITORS THAT DEMONSTRATE IN VIVO ANTICANCER ACTIVITY IN JRNL TITL 3 MOUSE XENOGRAFT MODELS. JRNL REF BIOORG.CHEM. V. 101 03901 2020 JRNL REFN ISSN 0045-2068 JRNL PMID 32590225 JRNL DOI 10.1016/J.BIOORG.2020.103901 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 20455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.001 REMARK 3 FREE R VALUE TEST SET COUNT : 1023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4200 - 4.9546 1.00 3014 159 0.2255 0.3110 REMARK 3 2 4.9546 - 3.9331 1.00 2837 149 0.1982 0.2593 REMARK 3 3 3.9331 - 3.4361 0.99 2772 147 0.2064 0.2581 REMARK 3 4 3.4361 - 3.1220 1.00 2755 144 0.2277 0.2784 REMARK 3 5 3.1220 - 2.8982 1.00 2738 144 0.2392 0.2669 REMARK 3 6 2.8982 - 2.7274 0.99 2734 144 0.2550 0.3083 REMARK 3 7 2.7274 - 2.6000 0.95 2582 136 0.2716 0.3358 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.358 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.561 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3618 REMARK 3 ANGLE : 0.558 4873 REMARK 3 CHIRALITY : 0.021 534 REMARK 3 PLANARITY : 0.002 616 REMARK 3 DIHEDRAL : 11.807 1359 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.7273 0.6329 22.1756 REMARK 3 T TENSOR REMARK 3 T11: 0.7331 T22: 0.2855 REMARK 3 T33: 0.6468 T12: -0.0319 REMARK 3 T13: -0.3008 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 2.2560 L22: 0.3692 REMARK 3 L33: 1.4574 L12: -0.2545 REMARK 3 L13: -0.2220 L23: 0.2832 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: 0.4553 S13: 0.4719 REMARK 3 S21: -0.3162 S22: -0.0249 S23: 0.8864 REMARK 3 S31: 0.1234 S32: 0.2423 S33: 0.1396 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.3929 11.3044 20.6915 REMARK 3 T TENSOR REMARK 3 T11: 0.7707 T22: 0.2569 REMARK 3 T33: 0.4100 T12: -0.0514 REMARK 3 T13: -0.2943 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.6655 L22: 1.5207 REMARK 3 L33: 0.2607 L12: -0.3016 REMARK 3 L13: 0.1400 L23: 0.4260 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: 0.1755 S13: 0.0002 REMARK 3 S21: -0.3717 S22: 0.0864 S23: 0.2788 REMARK 3 S31: -0.0483 S32: -0.0554 S33: -0.0085 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.2726 37.5244 19.2652 REMARK 3 T TENSOR REMARK 3 T11: 0.6093 T22: 0.4063 REMARK 3 T33: 0.5869 T12: -0.0013 REMARK 3 T13: -0.3015 T23: 0.1907 REMARK 3 L TENSOR REMARK 3 L11: 1.0206 L22: 0.1880 REMARK 3 L33: 1.3069 L12: -0.1113 REMARK 3 L13: 0.7794 L23: 0.1838 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.0837 S13: -0.1341 REMARK 3 S21: 0.0416 S22: 0.1123 S23: 0.1656 REMARK 3 S31: 0.1178 S32: -0.0735 S33: -0.1471 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 552 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7668 58.8305 11.3976 REMARK 3 T TENSOR REMARK 3 T11: 0.5934 T22: 0.6066 REMARK 3 T33: 0.7890 T12: 0.0971 REMARK 3 T13: -0.1337 T23: 0.3752 REMARK 3 L TENSOR REMARK 3 L11: 0.6246 L22: 0.3702 REMARK 3 L33: 0.5846 L12: -0.1534 REMARK 3 L13: 0.0490 L23: 0.0219 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.0931 S13: 0.0204 REMARK 3 S21: 0.1665 S22: 0.2429 S23: 0.3106 REMARK 3 S31: -0.3900 S32: -0.5849 S33: -0.2275 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300016801. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.76 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20501 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5Y3N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CACODYLATE PH 6.76, 0.1M CA REMARK 280 -ACETATE, 14% PEG 20000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.88850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.94550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.94550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.94425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.94550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.94550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 191.83275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.94550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.94550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.94425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.94550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.94550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 191.83275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 127.88850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 60 REMARK 465 THR A 61 REMARK 465 GLN A 62 REMARK 465 THR A 63 REMARK 465 ALA A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 66 REMARK 465 LYS A 67 REMARK 465 GLU A 68 REMARK 465 GLU A 69 REMARK 465 GLY A 173 REMARK 465 THR A 174 REMARK 465 ILE A 175 REMARK 465 ALA A 176 REMARK 465 ARG A 177 REMARK 465 SER A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 LYS A 181 REMARK 465 ALA A 182 REMARK 465 PHE A 183 REMARK 465 LEU A 184 REMARK 465 ASP A 185 REMARK 465 ALA A 186 REMARK 465 LEU A 187 REMARK 465 GLN A 188 REMARK 465 ASN A 189 REMARK 465 GLN A 190 REMARK 465 ALA A 191 REMARK 465 GLU A 192 REMARK 465 ALA A 193 REMARK 465 SER A 194 REMARK 465 SER A 195 REMARK 465 LYS A 196 REMARK 465 ILE A 197 REMARK 465 ILE A 198 REMARK 465 GLY A 199 REMARK 465 GLN A 200 REMARK 465 SER A 351 REMARK 465 MET A 352 REMARK 465 PHE A 353 REMARK 465 ASP A 354 REMARK 465 VAL A 355 REMARK 465 SER A 356 REMARK 465 ARG A 357 REMARK 465 GLU A 358 REMARK 465 LEU A 359 REMARK 465 GLY A 360 REMARK 465 SER A 361 REMARK 465 ASN A 399 REMARK 465 LEU A 400 REMARK 465 SER A 401 REMARK 465 ARG A 402 REMARK 465 GLU A 403 REMARK 465 LEU A 404 REMARK 465 LEU A 405 REMARK 465 GLY A 493 REMARK 465 THR A 494 REMARK 465 ASP A 553 REMARK 465 ILE A 554 REMARK 465 VAL A 555 REMARK 465 VAL A 556 REMARK 465 ASP A 557 REMARK 465 HIS A 558 REMARK 465 TYR A 559 REMARK 465 LYS A 560 REMARK 465 GLU A 561 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 552 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 216 OH TYR A 218 2.17 REMARK 500 O HOH A 716 O HOH A 734 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 103 -34.48 -143.36 REMARK 500 THR A 159 36.91 -91.70 REMARK 500 VAL A 169 -61.84 -96.62 REMARK 500 THR A 294 -31.97 -134.49 REMARK 500 ILE A 372 -55.13 -128.36 REMARK 500 ALA A 376 55.23 -109.92 REMARK 500 SER A 408 85.41 -176.21 REMARK 500 ALA A 409 -76.32 -133.89 REMARK 500 LYS A 520 -66.74 -101.45 REMARK 500 ASP A 521 -65.77 -135.59 REMARK 500 ARG A 540 -52.43 64.34 REMARK 500 ASP A 543 -121.98 61.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 521 THR A 522 -147.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 767 DISTANCE = 6.75 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE6 A 601 DBREF 7C05 A 60 561 UNP Q12931 TRAP1_HUMAN 60 561 SEQRES 1 A 502 SER THR GLN THR ALA GLU ASP LYS GLU GLU PRO LEU HIS SEQRES 2 A 502 SER ILE ILE SER SER THR GLU SER VAL GLN GLY SER THR SEQRES 3 A 502 SER LYS HIS GLU PHE GLN ALA GLU THR LYS LYS LEU LEU SEQRES 4 A 502 ASP ILE VAL ALA ARG SER LEU TYR SER GLU LYS GLU VAL SEQRES 5 A 502 PHE ILE ARG GLU LEU ILE SER ASN ALA SER ASP ALA LEU SEQRES 6 A 502 GLU LYS LEU ARG HIS LYS LEU VAL SER ASP GLY GLN ALA SEQRES 7 A 502 LEU PRO GLU MET GLU ILE HIS LEU GLN THR ASN ALA GLU SEQRES 8 A 502 LYS GLY THR ILE THR ILE GLN ASP THR GLY ILE GLY MET SEQRES 9 A 502 THR GLN GLU GLU LEU VAL SER ASN LEU GLY THR ILE ALA SEQRES 10 A 502 ARG SER GLY SER LYS ALA PHE LEU ASP ALA LEU GLN ASN SEQRES 11 A 502 GLN ALA GLU ALA SER SER LYS ILE ILE GLY GLN PHE GLY SEQRES 12 A 502 VAL GLY PHE TYR SER ALA PHE MET VAL ALA ASP ARG VAL SEQRES 13 A 502 GLU VAL TYR SER ARG SER ALA ALA PRO GLY SER LEU GLY SEQRES 14 A 502 TYR GLN TRP LEU SER ASP GLY SER GLY VAL PHE GLU ILE SEQRES 15 A 502 ALA GLU ALA SER GLY VAL ARG THR GLY THR LYS ILE ILE SEQRES 16 A 502 ILE HIS LEU LYS SER ASP CYS LYS GLU PHE SER SER GLU SEQRES 17 A 502 ALA ARG VAL ARG ASP VAL VAL THR LYS TYR SER ASN PHE SEQRES 18 A 502 VAL SER PHE PRO LEU TYR LEU ASN GLY ARG ARG MET ASN SEQRES 19 A 502 THR LEU GLN ALA ILE TRP MET MET ASP PRO LYS ASP VAL SEQRES 20 A 502 ARG GLU TRP GLN HIS GLU GLU PHE TYR ARG TYR VAL ALA SEQRES 21 A 502 GLN ALA HIS ASP LYS PRO ARG TYR THR LEU HIS TYR LYS SEQRES 22 A 502 THR ASP ALA PRO LEU ASN ILE ARG SER ILE PHE TYR VAL SEQRES 23 A 502 PRO ASP MET LYS PRO SER MET PHE ASP VAL SER ARG GLU SEQRES 24 A 502 LEU GLY SER SER VAL ALA LEU TYR SER ARG LYS VAL LEU SEQRES 25 A 502 ILE GLN THR LYS ALA THR ASP ILE LEU PRO LYS TRP LEU SEQRES 26 A 502 ARG PHE ILE ARG GLY VAL VAL ASP SER GLU ASP ILE PRO SEQRES 27 A 502 LEU ASN LEU SER ARG GLU LEU LEU GLN GLU SER ALA LEU SEQRES 28 A 502 ILE ARG LYS LEU ARG ASP VAL LEU GLN GLN ARG LEU ILE SEQRES 29 A 502 LYS PHE PHE ILE ASP GLN SER LYS LYS ASP ALA GLU LYS SEQRES 30 A 502 TYR ALA LYS PHE PHE GLU ASP TYR GLY LEU PHE MET ARG SEQRES 31 A 502 GLU GLY ILE VAL THR ALA THR GLU GLN GLU VAL LYS GLU SEQRES 32 A 502 ASP ILE ALA LYS LEU LEU ARG TYR GLU SER SER ALA LEU SEQRES 33 A 502 PRO SER GLY GLN LEU THR SER LEU SER GLU TYR ALA SER SEQRES 34 A 502 ARG MET ARG ALA GLY THR ARG ASN ILE TYR TYR LEU CYS SEQRES 35 A 502 ALA PRO ASN ARG HIS LEU ALA GLU HIS SER PRO TYR TYR SEQRES 36 A 502 GLU ALA MET LYS LYS LYS ASP THR GLU VAL LEU PHE CYS SEQRES 37 A 502 PHE GLU GLN PHE ASP GLU LEU THR LEU LEU HIS LEU ARG SEQRES 38 A 502 GLU PHE ASP LYS LYS LYS LEU ILE SER VAL GLU THR ASP SEQRES 39 A 502 ILE VAL VAL ASP HIS TYR LYS GLU HET FE6 A 601 28 HETNAM FE6 1-[(4-BROMANYL-2-FLUORANYL-PHENYL)METHYL]-4-CHLORANYL- HETNAM 2 FE6 PYRAZOLO[3,4-D]PYRIMIDIN-6-AMINE FORMUL 2 FE6 C12 H8 BR CL F N5 FORMUL 3 HOH *67(H2 O) HELIX 1 AA1 GLN A 91 SER A 104 1 14 HELIX 2 AA2 GLU A 108 GLU A 110 5 3 HELIX 3 AA3 VAL A 111 GLY A 135 1 25 HELIX 4 AA4 THR A 164 SER A 170 1 7 HELIX 5 AA5 GLY A 202 SER A 207 1 6 HELIX 6 AA6 ALA A 208 MET A 210 5 3 HELIX 7 AA7 SER A 259 SER A 265 5 7 HELIX 8 AA8 SER A 266 SER A 278 1 13 HELIX 9 AA9 ALA A 297 MET A 301 5 5 HELIX 10 AB1 ASP A 302 VAL A 306 5 5 HELIX 11 AB2 ARG A 307 ALA A 319 1 13 HELIX 12 AB3 ALA A 376 LEU A 380 5 5 HELIX 13 AB4 PRO A 381 ARG A 385 5 5 HELIX 14 AB5 LEU A 410 LYS A 431 1 22 HELIX 15 AB6 ASP A 433 ALA A 455 1 23 HELIX 16 AB7 GLU A 457 LYS A 466 1 10 HELIX 17 AB8 SER A 482 SER A 488 1 7 HELIX 18 AB9 ASN A 504 HIS A 510 1 7 HELIX 19 AC1 SER A 511 LYS A 519 1 9 HELIX 20 AC2 GLU A 529 ARG A 540 1 12 SHEET 1 AA1 3 SER A 80 VAL A 81 0 SHEET 2 AA1 3 VAL A 238 SER A 245 -1 O SER A 245 N SER A 80 SHEET 3 AA1 3 SER A 86 GLU A 89 -1 N HIS A 88 O PHE A 239 SHEET 1 AA2 9 SER A 80 VAL A 81 0 SHEET 2 AA2 9 VAL A 238 SER A 245 -1 O SER A 245 N SER A 80 SHEET 3 AA2 9 GLY A 228 SER A 233 -1 N GLN A 230 O ALA A 242 SHEET 4 AA2 9 ALA A 212 ARG A 220 -1 N VAL A 215 O SER A 233 SHEET 5 AA2 9 GLY A 250 LEU A 257 -1 O ILE A 254 N GLU A 216 SHEET 6 AA2 9 THR A 153 ASP A 158 -1 N ILE A 156 O ILE A 253 SHEET 7 AA2 9 ILE A 143 ASN A 148 -1 N HIS A 144 O GLN A 157 SHEET 8 AA2 9 LEU A 285 LEU A 287 1 O TYR A 286 N ILE A 143 SHEET 9 AA2 9 ARG A 290 ARG A 291 -1 O ARG A 290 N LEU A 287 SHEET 1 AA3 5 PRO A 325 THR A 333 0 SHEET 2 AA3 5 ILE A 339 PRO A 346 -1 O VAL A 345 N ARG A 326 SHEET 3 AA3 5 ARG A 388 ASP A 392 -1 O ASP A 392 N ARG A 340 SHEET 4 AA3 5 ALA A 364 SER A 367 1 N TYR A 366 O VAL A 391 SHEET 5 AA3 5 VAL A 370 GLN A 373 -1 O VAL A 370 N SER A 367 SHEET 1 AA4 5 GLU A 471 SER A 472 0 SHEET 2 AA4 5 LEU A 525 CYS A 527 -1 O PHE A 526 N GLU A 471 SHEET 3 AA4 5 ILE A 497 CYS A 501 1 N TYR A 498 O LEU A 525 SHEET 4 AA4 5 LYS A 545 SER A 549 1 O ILE A 548 N ILE A 497 SHEET 5 AA4 5 GLU A 541 PHE A 542 -1 N PHE A 542 O LYS A 545 CISPEP 1 PRO A 397 LEU A 398 0 -0.86 SITE 1 AC1 10 ALA A 123 ASP A 158 ILE A 161 GLY A 162 SITE 2 AC1 10 MET A 163 PHE A 201 GLY A 202 PHE A 205 SITE 3 AC1 10 TRP A 231 THR A 251 CRYST1 69.891 69.891 255.777 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014308 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003910 0.00000