HEADER TRANSPORT PROTEIN 01-MAY-20 7C0W TITLE CRYSTAL STRUCTURE OF A DINUCLEOTIDE-BINDING PROTEIN (Y224A) OF ABC TITLE 2 TRANSPORTER ENDOGENOUSLY BOUND TO URIDYLYL-3'-5'-PHOSPHO-GUANOSINE TITLE 3 (FORM II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER, PERIPLASMIC SUGAR-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 ATCC: 27634; SOURCE 5 GENE: TTHA0379; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS C-DI-GMP/AMP, SUBSTRATE-BINDING PROTEIN, THERMUS THERMOPHILUS, TRNA KEYWDS 2 SYNTHESIS AND/OR MODIFICATION, VENUS FLY-TRAP MECHANISM, UGPB, KEYWDS 3 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,M.CHANDRAVANSHI,R.SAMANTA REVDAT 3 29-NOV-23 7C0W 1 REMARK REVDAT 2 18-AUG-21 7C0W 1 JRNL REVDAT 1 10-MAR-21 7C0W 0 JRNL AUTH M.CHANDRAVANSHI,R.SAMANTA,S.P.KANAUJIA JRNL TITL STRUCTURAL AND THERMODYNAMIC INSIGHTS INTO THE NOVEL JRNL TITL 2 DINUCLEOTIDE-BINDING PROTEIN OF ABC TRANSPORTER UNVEILS ITS JRNL TITL 3 MOONLIGHTING FUNCTION. JRNL REF FEBS J. V. 288 4614 2021 JRNL REFN ISSN 1742-464X JRNL PMID 33599038 JRNL DOI 10.1111/FEBS.15774 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 42953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 411 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : -1.47000 REMARK 3 B33 (A**2) : 2.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.273 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.412 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6350 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5967 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8632 ; 1.781 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13846 ; 1.390 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 797 ; 6.690 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;34.933 ;23.153 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1020 ;15.801 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.423 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 805 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7089 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1319 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 393 B 0 393 12719 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 395 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6331 4.2938 5.5949 REMARK 3 T TENSOR REMARK 3 T11: 0.0241 T22: 0.0447 REMARK 3 T33: 0.0152 T12: 0.0005 REMARK 3 T13: -0.0172 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.6782 L22: 0.7307 REMARK 3 L33: 0.5367 L12: -0.2211 REMARK 3 L13: -0.3184 L23: 0.1637 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: -0.0218 S13: -0.0144 REMARK 3 S21: 0.0520 S22: 0.0228 S23: -0.0261 REMARK 3 S31: -0.0093 S32: 0.0078 S33: 0.0048 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 394 REMARK 3 ORIGIN FOR THE GROUP (A): 44.6710 9.0976 45.8619 REMARK 3 T TENSOR REMARK 3 T11: 0.0201 T22: 0.0497 REMARK 3 T33: 0.0030 T12: -0.0034 REMARK 3 T13: -0.0008 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.8309 L22: 0.6144 REMARK 3 L33: 0.5071 L12: 0.3157 REMARK 3 L13: 0.3495 L23: 0.0637 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: 0.0946 S13: -0.0208 REMARK 3 S21: -0.0557 S22: 0.0585 S23: -0.0278 REMARK 3 S31: 0.0130 S32: 0.0318 S33: -0.0038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7C0W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300016833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45231 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 58.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7C0F REMARK 200 REMARK 200 REMARK: MONOCLINIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM PHOSPHATE, 0.1M SODIUM REMARK 280 CACODYLATE PH 6.5, 30% PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.03000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ARG A 396 REMARK 465 THR A 397 REMARK 465 ARG A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 MET B -1 REMARK 465 SER B 395 REMARK 465 ARG B 396 REMARK 465 THR B 397 REMARK 465 ARG B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 96 O HOH B 601 2.01 REMARK 500 O HOH A 762 O HOH A 771 2.04 REMARK 500 O HOH B 704 O HOH B 795 2.14 REMARK 500 O HOH B 666 O HOH B 768 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 297 CD GLU B 297 OE2 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 44 69.67 -107.12 REMARK 500 PHE A 124 -70.45 -126.30 REMARK 500 ASN A 125 79.42 -117.12 REMARK 500 GLN A 274 -158.92 -128.12 REMARK 500 ALA A 352 41.02 -94.39 REMARK 500 ILE A 363 -71.75 -119.07 REMARK 500 PHE B 124 -68.28 -127.67 REMARK 500 ASN B 125 79.10 -118.25 REMARK 500 GLN B 267 138.52 -170.76 REMARK 500 GLN B 274 -160.53 -127.32 REMARK 500 ALA B 352 38.48 -95.30 REMARK 500 ILE B 363 -71.12 -116.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 OG1 REMARK 620 2 TYR A 246 OH 129.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO2 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FGO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO2 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FGO B 503 DBREF 7C0W A 1 398 UNP Q5SLB4 Q5SLB4_THET8 20 417 DBREF 7C0W B 1 398 UNP Q5SLB4 Q5SLB4_THET8 20 417 SEQADV 7C0W MET A -1 UNP Q5SLB4 INITIATING METHIONINE SEQADV 7C0W MET A 0 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W ALA A 224 UNP Q5SLB4 TYR 243 ENGINEERED MUTATION SEQADV 7C0W HIS A 399 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W HIS A 400 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W HIS A 401 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W HIS A 402 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W HIS A 403 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W HIS A 404 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W MET B -1 UNP Q5SLB4 INITIATING METHIONINE SEQADV 7C0W MET B 0 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W ALA B 224 UNP Q5SLB4 TYR 243 ENGINEERED MUTATION SEQADV 7C0W HIS B 399 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W HIS B 400 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W HIS B 401 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W HIS B 402 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W HIS B 403 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0W HIS B 404 UNP Q5SLB4 EXPRESSION TAG SEQRES 1 A 406 MET MET LYS PRO GLU ASP VAL ILE LYS GLU GLN CYS ALA SEQRES 2 A 406 ARG ALA LYS VAL VAL ALA GLU LEU TRP HIS GLY PHE THR SEQRES 3 A 406 GLY GLY ALA PRO LYS ALA ALA LEU GLU ASN LEU VAL VAL SEQRES 4 A 406 GLU PHE ASN LYS ALA GLN GLN GLY ARG CYS VAL ARG PRO SEQRES 5 A 406 VAL PRO GLN GLY GLY TYR ARG ASP LEU SER THR LYS ILE SEQRES 6 A 406 LYS ALA ALA PHE ALA ALA GLY LYS VAL PRO THR MET ALA SEQRES 7 A 406 GLN ALA PHE GLU ASN ASN ILE ALA LEU TYR LEU GLU ALA SEQRES 8 A 406 LYS ALA LEU LEU PRO ILE GLU SER LEU GLY VAL LYS LEU SEQRES 9 A 406 GLN GLY VAL ASN LEU THR PHE LEU ASN ALA VAL ARG PHE SEQRES 10 A 406 GLY GLY VAL VAL TYR GLY VAL PRO PHE ASN LYS SER ILE SEQRES 11 A 406 GLN VAL LEU TYR TYR ASN LYS ASP LEU LEU LYS LYS HIS SEQRES 12 A 406 GLY VAL PRO VAL PRO ALA THR LEU GLU GLU PHE VAL ALA SEQRES 13 A 406 ALA ALA LYS LYS LEU SER ARG ALA GLU GLY GLY PRO VAL SEQRES 14 A 406 TYR TRP PHE GLN PRO ASP ALA SER THR PHE ALA TYR PHE SEQRES 15 A 406 PHE PHE ASN LEU GLY GLY SER TYR LEU LYS ASP GLY LYS SEQRES 16 A 406 LEU VAL LEU ASN SER LYS GLU ALA VAL GLU ALA LEU THR SEQRES 17 A 406 LEU LEU GLN ASN GLY VAL LYS GLU GLY TRP ALA LYS PRO SEQRES 18 A 406 ILE THR SER GLY ALA ILE ASN GLN ASN LEU GLY SER GLY SEQRES 19 A 406 PRO TYR ALA PHE SER VAL ASP THR SER ALA GLY TYR THR SEQRES 20 A 406 TYR TYR LEU ARG ALA ALA LYS PHE ASP LEU GLY VAL ALA SEQRES 21 A 406 THR LEU PRO GLY ARG THR LYS GLY GLN PRO GLY TYR GLY SEQRES 22 A 406 LEU VAL GLN GLY THR ASN LEU VAL VAL PHE ARG GLN ALA SEQRES 23 A 406 SER LYS GLU GLU GLN ALA VAL ALA LYS ASP PHE LEU GLU SEQRES 24 A 406 PHE VAL LEU SER PRO ARG ALA GLN ALA VAL PHE ALA THR SEQRES 25 A 406 ALA THR GLY TYR VAL PRO VAL THR GLU GLY ALA LEU LYS SEQRES 26 A 406 ASP PRO VAL TYR GLN ALA TYR ALA ALA GLU ASN PRO ASP SEQRES 27 A 406 TYR ALA THR ILE VAL ARG GLN SER ARG TYR ALA LYS PHE SEQRES 28 A 406 GLU PRO ALA LEU ALA GLU TRP GLU GLN ILE ARG PHE ASP SEQRES 29 A 406 ILE LEU GLY GLN ALA ILE LYS GLU ALA ILE LEU ASN LYS SEQRES 30 A 406 ALA ASP PRO LYS ALA ALA LEU ASP ARG ALA GLN LYS LEU SEQRES 31 A 406 ALA GLU ASP LEU LEU SER SER ARG THR ARG HIS HIS HIS SEQRES 32 A 406 HIS HIS HIS SEQRES 1 B 406 MET MET LYS PRO GLU ASP VAL ILE LYS GLU GLN CYS ALA SEQRES 2 B 406 ARG ALA LYS VAL VAL ALA GLU LEU TRP HIS GLY PHE THR SEQRES 3 B 406 GLY GLY ALA PRO LYS ALA ALA LEU GLU ASN LEU VAL VAL SEQRES 4 B 406 GLU PHE ASN LYS ALA GLN GLN GLY ARG CYS VAL ARG PRO SEQRES 5 B 406 VAL PRO GLN GLY GLY TYR ARG ASP LEU SER THR LYS ILE SEQRES 6 B 406 LYS ALA ALA PHE ALA ALA GLY LYS VAL PRO THR MET ALA SEQRES 7 B 406 GLN ALA PHE GLU ASN ASN ILE ALA LEU TYR LEU GLU ALA SEQRES 8 B 406 LYS ALA LEU LEU PRO ILE GLU SER LEU GLY VAL LYS LEU SEQRES 9 B 406 GLN GLY VAL ASN LEU THR PHE LEU ASN ALA VAL ARG PHE SEQRES 10 B 406 GLY GLY VAL VAL TYR GLY VAL PRO PHE ASN LYS SER ILE SEQRES 11 B 406 GLN VAL LEU TYR TYR ASN LYS ASP LEU LEU LYS LYS HIS SEQRES 12 B 406 GLY VAL PRO VAL PRO ALA THR LEU GLU GLU PHE VAL ALA SEQRES 13 B 406 ALA ALA LYS LYS LEU SER ARG ALA GLU GLY GLY PRO VAL SEQRES 14 B 406 TYR TRP PHE GLN PRO ASP ALA SER THR PHE ALA TYR PHE SEQRES 15 B 406 PHE PHE ASN LEU GLY GLY SER TYR LEU LYS ASP GLY LYS SEQRES 16 B 406 LEU VAL LEU ASN SER LYS GLU ALA VAL GLU ALA LEU THR SEQRES 17 B 406 LEU LEU GLN ASN GLY VAL LYS GLU GLY TRP ALA LYS PRO SEQRES 18 B 406 ILE THR SER GLY ALA ILE ASN GLN ASN LEU GLY SER GLY SEQRES 19 B 406 PRO TYR ALA PHE SER VAL ASP THR SER ALA GLY TYR THR SEQRES 20 B 406 TYR TYR LEU ARG ALA ALA LYS PHE ASP LEU GLY VAL ALA SEQRES 21 B 406 THR LEU PRO GLY ARG THR LYS GLY GLN PRO GLY TYR GLY SEQRES 22 B 406 LEU VAL GLN GLY THR ASN LEU VAL VAL PHE ARG GLN ALA SEQRES 23 B 406 SER LYS GLU GLU GLN ALA VAL ALA LYS ASP PHE LEU GLU SEQRES 24 B 406 PHE VAL LEU SER PRO ARG ALA GLN ALA VAL PHE ALA THR SEQRES 25 B 406 ALA THR GLY TYR VAL PRO VAL THR GLU GLY ALA LEU LYS SEQRES 26 B 406 ASP PRO VAL TYR GLN ALA TYR ALA ALA GLU ASN PRO ASP SEQRES 27 B 406 TYR ALA THR ILE VAL ARG GLN SER ARG TYR ALA LYS PHE SEQRES 28 B 406 GLU PRO ALA LEU ALA GLU TRP GLU GLN ILE ARG PHE ASP SEQRES 29 B 406 ILE LEU GLY GLN ALA ILE LYS GLU ALA ILE LEU ASN LYS SEQRES 30 B 406 ALA ASP PRO LYS ALA ALA LEU ASP ARG ALA GLN LYS LEU SEQRES 31 B 406 ALA GLU ASP LEU LEU SER SER ARG THR ARG HIS HIS HIS SEQRES 32 B 406 HIS HIS HIS HET NA A 501 1 HET CO2 A 502 3 HET EDO A 503 4 HET GOL A 504 6 HET FGO A 505 43 HET CO2 B 501 3 HET GOL B 502 6 HET FGO B 503 43 HETNAM NA SODIUM ION HETNAM CO2 CARBON DIOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM FGO [(1S,3R,3AR,6AS)-3-(2-AZANYL-6-OXIDANYLIDENE-1H-PURIN- HETNAM 2 FGO 9-YL)-5,5-BIS(OXIDANYL)-1,3,3A,4,6,6A- HETNAM 3 FGO HEXAHYDROCYCLOPENTA[C]FURAN-1-YL]METHYL [(2R,3S,4R, HETNAM 4 FGO 5R)-5-[2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-2- HETNAM 5 FGO (HYDROXYMETHYL)-4-OXIDANYL-OXOLAN-3-YL] HYDROGEN HETNAM 6 FGO PHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NA NA 1+ FORMUL 4 CO2 2(C O2) FORMUL 5 EDO C2 H6 O2 FORMUL 6 GOL 2(C3 H8 O3) FORMUL 7 FGO 2(C22 H28 N7 O13 P) FORMUL 11 HOH *411(H2 O) HELIX 1 AA1 LYS A 1 ARG A 12 1 12 HELIX 2 AA2 GLY A 25 ALA A 42 1 18 HELIX 3 AA3 GLY A 55 GLY A 70 1 16 HELIX 4 AA4 PHE A 79 ALA A 89 1 11 HELIX 5 AA5 ILE A 95 GLY A 99 5 5 HELIX 6 AA6 ASN A 106 ASN A 111 1 6 HELIX 7 AA7 LYS A 135 HIS A 141 1 7 HELIX 8 AA8 THR A 148 GLY A 164 1 17 HELIX 9 AA9 ASP A 173 LEU A 184 1 12 HELIX 10 AB1 SER A 198 GLU A 214 1 17 HELIX 11 AB2 GLY A 243 ALA A 251 1 9 HELIX 12 AB3 SER A 285 LEU A 300 1 16 HELIX 13 AB4 SER A 301 GLY A 313 1 13 HELIX 14 AB5 THR A 318 ASP A 324 1 7 HELIX 15 AB6 ASP A 324 ASN A 334 1 11 HELIX 16 AB7 PRO A 335 SER A 344 1 10 HELIX 17 AB8 GLU A 355 ILE A 363 1 9 HELIX 18 AB9 ILE A 363 ASN A 374 1 12 HELIX 19 AC1 ASP A 377 SER A 394 1 18 HELIX 20 AC2 LYS B 1 ARG B 12 1 12 HELIX 21 AC3 GLY B 25 ALA B 42 1 18 HELIX 22 AC4 GLY B 55 GLY B 70 1 16 HELIX 23 AC5 PHE B 79 ALA B 89 1 11 HELIX 24 AC6 PRO B 94 GLY B 99 5 6 HELIX 25 AC7 ASN B 106 ASN B 111 1 6 HELIX 26 AC8 LYS B 135 HIS B 141 1 7 HELIX 27 AC9 THR B 148 GLY B 164 1 17 HELIX 28 AD1 ASP B 173 LEU B 184 1 12 HELIX 29 AD2 SER B 198 GLU B 214 1 17 HELIX 30 AD3 GLY B 243 ALA B 251 1 9 HELIX 31 AD4 SER B 285 LEU B 300 1 16 HELIX 32 AD5 SER B 301 GLY B 313 1 13 HELIX 33 AD6 THR B 318 ASP B 324 1 7 HELIX 34 AD7 ASP B 324 ASN B 334 1 11 HELIX 35 AD8 PRO B 335 ARG B 345 1 11 HELIX 36 AD9 GLU B 355 ILE B 363 1 9 HELIX 37 AE1 ILE B 363 ASN B 374 1 12 HELIX 38 AE2 ASP B 377 SER B 394 1 18 SHEET 1 AA1 6 ARG A 46 PRO A 52 0 SHEET 2 AA1 6 VAL A 15 HIS A 21 1 N ALA A 17 O CYS A 47 SHEET 3 AA1 6 MET A 75 ALA A 78 1 O MET A 75 N GLU A 18 SHEET 4 AA1 6 GLY A 271 VAL A 280 -1 O VAL A 279 N ALA A 76 SHEET 5 AA1 6 VAL A 122 ASN A 134 -1 N VAL A 122 O LEU A 278 SHEET 6 AA1 6 LEU A 255 ALA A 258 -1 O GLY A 256 N TYR A 133 SHEET 1 AA2 4 PHE A 236 THR A 240 0 SHEET 2 AA2 4 VAL A 122 ASN A 134 -1 N TYR A 132 O SER A 237 SHEET 3 AA2 4 GLY A 271 VAL A 280 -1 O LEU A 278 N VAL A 122 SHEET 4 AA2 4 ALA A 347 LYS A 348 1 O LYS A 348 N VAL A 273 SHEET 1 AA3 2 ARG A 114 PHE A 115 0 SHEET 2 AA3 2 VAL A 118 VAL A 119 -1 O VAL A 118 N PHE A 115 SHEET 1 AA4 2 TYR A 168 PHE A 170 0 SHEET 2 AA4 2 ALA A 217 PRO A 219 1 O LYS A 218 N TYR A 168 SHEET 1 AA5 2 LEU A 189 LYS A 190 0 SHEET 2 AA5 2 LYS A 193 LEU A 194 -1 O LYS A 193 N LYS A 190 SHEET 1 AA6 6 ARG B 46 PRO B 52 0 SHEET 2 AA6 6 VAL B 15 HIS B 21 1 N ALA B 17 O CYS B 47 SHEET 3 AA6 6 MET B 75 ALA B 78 1 O MET B 75 N GLU B 18 SHEET 4 AA6 6 GLY B 271 VAL B 280 -1 O VAL B 279 N ALA B 76 SHEET 5 AA6 6 VAL B 122 ASN B 134 -1 N VAL B 122 O LEU B 278 SHEET 6 AA6 6 LEU B 255 ALA B 258 -1 O GLY B 256 N TYR B 133 SHEET 1 AA7 4 PHE B 236 THR B 240 0 SHEET 2 AA7 4 VAL B 122 ASN B 134 -1 N TYR B 132 O SER B 237 SHEET 3 AA7 4 GLY B 271 VAL B 280 -1 O LEU B 278 N VAL B 122 SHEET 4 AA7 4 ALA B 347 LYS B 348 1 O LYS B 348 N VAL B 273 SHEET 1 AA8 2 ARG B 114 PHE B 115 0 SHEET 2 AA8 2 VAL B 118 VAL B 119 -1 O VAL B 118 N PHE B 115 SHEET 1 AA9 2 TYR B 168 PHE B 170 0 SHEET 2 AA9 2 ALA B 217 PRO B 219 1 O LYS B 218 N TYR B 168 SHEET 1 AB1 2 LEU B 189 LYS B 190 0 SHEET 2 AB1 2 LYS B 193 LEU B 194 -1 O LYS B 193 N LYS B 190 LINK OG1 THR A 24 NA NA A 501 1555 1555 2.90 LINK OH TYR A 246 NA NA A 501 1555 1555 2.88 SITE 1 AC1 3 THR A 24 GLY A 25 TYR A 246 SITE 1 AC2 3 FGO A 505 HOH A 677 HOH A 686 SITE 1 AC3 4 ALA A 112 ARG A 114 PHE A 115 ALA A 352 SITE 1 AC4 8 PHE A 182 ASN A 183 GLY A 262 ARG A 263 SITE 2 AC4 8 GLN A 267 PRO A 268 GLY A 269 HOH A 709 SITE 1 AC5 18 TYR A 56 ARG A 57 PHE A 79 ASN A 81 SITE 2 AC5 18 SER A 127 SER A 175 ASN A 226 THR A 240 SITE 3 AC5 18 GLY A 243 TYR A 246 GLN A 274 GLY A 275 SITE 4 AC5 18 TYR A 314 GLU A 357 ARG A 360 PHE A 361 SITE 5 AC5 18 CO2 A 502 HOH A 624 SITE 1 AC6 1 ARG B 303 SITE 1 AC7 9 ASN B 183 GLY B 262 ARG B 263 GLN B 267 SITE 2 AC7 9 PRO B 268 GLY B 269 TYR B 270 HOH B 606 SITE 3 AC7 9 HOH B 701 SITE 1 AC8 18 TYR B 56 ARG B 57 PHE B 79 ASN B 81 SITE 2 AC8 18 SER B 127 SER B 175 ASN B 226 THR B 240 SITE 3 AC8 18 ALA B 242 GLY B 243 TYR B 246 GLN B 274 SITE 4 AC8 18 GLY B 275 TYR B 314 GLU B 357 ARG B 360 SITE 5 AC8 18 PHE B 361 HOH B 753 CRYST1 65.960 58.060 103.080 90.00 93.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015161 0.000000 0.000861 0.00000 SCALE2 0.000000 0.017224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009717 0.00000