HEADER TRANSPORT PROTEIN 01-MAY-20 7C0Z TITLE CRYSTAL STRUCTURE OF A DINUCLEOTIDE-BINDING PROTEIN (Y246A) OF ABC TITLE 2 TRANSPORTER ENDOGENOUSLY BOUND TO URIDYLYL-3'-5'-PHOSPHO-GUANOSINE TITLE 3 (FORM II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER, PERIPLASMIC SUGAR-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 ATCC: 27634; SOURCE 5 GENE: TTHA0379; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS C-DI-GMP/AMP, SUBSTRATE-BINDING PROTEIN, THERMUS THERMOPHILUS, TRNA KEYWDS 2 SYNTHESIS AND/OR MODIFICATION, VENUS FLY-TRAP MECHANISM, UGPB, KEYWDS 3 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,M.CHANDRAVANSHI,R.SAMANTA REVDAT 3 29-NOV-23 7C0Z 1 REMARK REVDAT 2 18-AUG-21 7C0Z 1 JRNL REVDAT 1 10-MAR-21 7C0Z 0 JRNL AUTH M.CHANDRAVANSHI,R.SAMANTA,S.P.KANAUJIA JRNL TITL STRUCTURAL AND THERMODYNAMIC INSIGHTS INTO THE NOVEL JRNL TITL 2 DINUCLEOTIDE-BINDING PROTEIN OF ABC TRANSPORTER UNVEILS ITS JRNL TITL 3 MOONLIGHTING FUNCTION. JRNL REF FEBS J. V. 288 4614 2021 JRNL REFN ISSN 1742-464X JRNL PMID 33599038 JRNL DOI 10.1111/FEBS.15774 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 37323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2654 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6038 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.20000 REMARK 3 B22 (A**2) : 29.19000 REMARK 3 B33 (A**2) : -15.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.261 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6309 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5941 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8583 ; 2.030 ; 1.668 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13775 ; 1.336 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 791 ; 7.675 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 301 ;35.650 ;22.890 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1015 ;17.889 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.258 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 799 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7065 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1328 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 391 B 1 391 11840 0.140 0.050 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.441 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.559 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 393 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5673 -5.6741 33.2359 REMARK 3 T TENSOR REMARK 3 T11: 0.0631 T22: 0.0053 REMARK 3 T33: 0.0725 T12: 0.0002 REMARK 3 T13: -0.0672 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.4424 L22: 0.3336 REMARK 3 L33: 0.5010 L12: -0.0584 REMARK 3 L13: 0.0916 L23: -0.1955 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: 0.0234 S13: -0.0357 REMARK 3 S21: 0.0052 S22: -0.0013 S23: 0.0091 REMARK 3 S31: 0.0137 S32: 0.0145 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 392 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6633 -46.5556 3.5647 REMARK 3 T TENSOR REMARK 3 T11: 0.0660 T22: 0.0099 REMARK 3 T33: 0.0699 T12: 0.0035 REMARK 3 T13: -0.0629 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.4750 L22: 0.3526 REMARK 3 L33: 0.4829 L12: -0.0808 REMARK 3 L13: -0.1430 L23: 0.1852 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: -0.0096 S13: 0.0219 REMARK 3 S21: -0.0125 S22: -0.0126 S23: -0.0077 REMARK 3 S31: -0.0412 S32: -0.0373 S33: -0.0176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7C0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300016836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39359 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 65.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.17400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7C0F REMARK 200 REMARK 200 REMARK: MONOCLINIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM PHOSPHATE, 0.1M SODIUM REMARK 280 CACODYLATE PH 6.5, 30% PEG 8000, MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.19500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 MET A 0 REMARK 465 SER A 394 REMARK 465 SER A 395 REMARK 465 ARG A 396 REMARK 465 THR A 397 REMARK 465 ARG A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 MET B -1 REMARK 465 MET B 0 REMARK 465 LEU B 393 REMARK 465 SER B 394 REMARK 465 SER B 395 REMARK 465 ARG B 396 REMARK 465 THR B 397 REMARK 465 ARG B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 348 O LYS B 323 2556 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 203 CD GLU B 203 OE1 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 73 173.94 -59.43 REMARK 500 PHE A 124 -69.84 -125.08 REMARK 500 ASP A 191 51.76 36.49 REMARK 500 THR A 312 -58.33 -122.42 REMARK 500 ALA A 352 31.02 -93.63 REMARK 500 PHE A 361 -62.15 -99.66 REMARK 500 ILE A 363 -70.07 -121.87 REMARK 500 PHE B 124 -68.70 -125.48 REMARK 500 ALA B 235 -32.58 -131.23 REMARK 500 LYS B 252 53.95 -99.56 REMARK 500 GLN B 274 -166.44 -128.90 REMARK 500 THR B 312 -50.72 -121.07 REMARK 500 PHE B 361 -62.37 -97.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FGO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FGO B 502 DBREF 7C0Z A 1 398 UNP Q5SLB4 Q5SLB4_THET8 20 417 DBREF 7C0Z B 1 398 UNP Q5SLB4 Q5SLB4_THET8 20 417 SEQADV 7C0Z MET A -1 UNP Q5SLB4 INITIATING METHIONINE SEQADV 7C0Z MET A 0 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z ALA A 246 UNP Q5SLB4 TYR 265 ENGINEERED MUTATION SEQADV 7C0Z HIS A 399 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z HIS A 400 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z HIS A 401 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z HIS A 402 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z HIS A 403 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z HIS A 404 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z MET B -1 UNP Q5SLB4 INITIATING METHIONINE SEQADV 7C0Z MET B 0 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z ALA B 246 UNP Q5SLB4 TYR 265 ENGINEERED MUTATION SEQADV 7C0Z HIS B 399 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z HIS B 400 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z HIS B 401 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z HIS B 402 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z HIS B 403 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C0Z HIS B 404 UNP Q5SLB4 EXPRESSION TAG SEQRES 1 A 406 MET MET LYS PRO GLU ASP VAL ILE LYS GLU GLN CYS ALA SEQRES 2 A 406 ARG ALA LYS VAL VAL ALA GLU LEU TRP HIS GLY PHE THR SEQRES 3 A 406 GLY GLY ALA PRO LYS ALA ALA LEU GLU ASN LEU VAL VAL SEQRES 4 A 406 GLU PHE ASN LYS ALA GLN GLN GLY ARG CYS VAL ARG PRO SEQRES 5 A 406 VAL PRO GLN GLY GLY TYR ARG ASP LEU SER THR LYS ILE SEQRES 6 A 406 LYS ALA ALA PHE ALA ALA GLY LYS VAL PRO THR MET ALA SEQRES 7 A 406 GLN ALA PHE GLU ASN ASN ILE ALA LEU TYR LEU GLU ALA SEQRES 8 A 406 LYS ALA LEU LEU PRO ILE GLU SER LEU GLY VAL LYS LEU SEQRES 9 A 406 GLN GLY VAL ASN LEU THR PHE LEU ASN ALA VAL ARG PHE SEQRES 10 A 406 GLY GLY VAL VAL TYR GLY VAL PRO PHE ASN LYS SER ILE SEQRES 11 A 406 GLN VAL LEU TYR TYR ASN LYS ASP LEU LEU LYS LYS HIS SEQRES 12 A 406 GLY VAL PRO VAL PRO ALA THR LEU GLU GLU PHE VAL ALA SEQRES 13 A 406 ALA ALA LYS LYS LEU SER ARG ALA GLU GLY GLY PRO VAL SEQRES 14 A 406 TYR TRP PHE GLN PRO ASP ALA SER THR PHE ALA TYR PHE SEQRES 15 A 406 PHE PHE ASN LEU GLY GLY SER TYR LEU LYS ASP GLY LYS SEQRES 16 A 406 LEU VAL LEU ASN SER LYS GLU ALA VAL GLU ALA LEU THR SEQRES 17 A 406 LEU LEU GLN ASN GLY VAL LYS GLU GLY TRP ALA LYS PRO SEQRES 18 A 406 ILE THR SER GLY TYR ILE ASN GLN ASN LEU GLY SER GLY SEQRES 19 A 406 PRO TYR ALA PHE SER VAL ASP THR SER ALA GLY TYR THR SEQRES 20 A 406 ALA TYR LEU ARG ALA ALA LYS PHE ASP LEU GLY VAL ALA SEQRES 21 A 406 THR LEU PRO GLY ARG THR LYS GLY GLN PRO GLY TYR GLY SEQRES 22 A 406 LEU VAL GLN GLY THR ASN LEU VAL VAL PHE ARG GLN ALA SEQRES 23 A 406 SER LYS GLU GLU GLN ALA VAL ALA LYS ASP PHE LEU GLU SEQRES 24 A 406 PHE VAL LEU SER PRO ARG ALA GLN ALA VAL PHE ALA THR SEQRES 25 A 406 ALA THR GLY TYR VAL PRO VAL THR GLU GLY ALA LEU LYS SEQRES 26 A 406 ASP PRO VAL TYR GLN ALA TYR ALA ALA GLU ASN PRO ASP SEQRES 27 A 406 TYR ALA THR ILE VAL ARG GLN SER ARG TYR ALA LYS PHE SEQRES 28 A 406 GLU PRO ALA LEU ALA GLU TRP GLU GLN ILE ARG PHE ASP SEQRES 29 A 406 ILE LEU GLY GLN ALA ILE LYS GLU ALA ILE LEU ASN LYS SEQRES 30 A 406 ALA ASP PRO LYS ALA ALA LEU ASP ARG ALA GLN LYS LEU SEQRES 31 A 406 ALA GLU ASP LEU LEU SER SER ARG THR ARG HIS HIS HIS SEQRES 32 A 406 HIS HIS HIS SEQRES 1 B 406 MET MET LYS PRO GLU ASP VAL ILE LYS GLU GLN CYS ALA SEQRES 2 B 406 ARG ALA LYS VAL VAL ALA GLU LEU TRP HIS GLY PHE THR SEQRES 3 B 406 GLY GLY ALA PRO LYS ALA ALA LEU GLU ASN LEU VAL VAL SEQRES 4 B 406 GLU PHE ASN LYS ALA GLN GLN GLY ARG CYS VAL ARG PRO SEQRES 5 B 406 VAL PRO GLN GLY GLY TYR ARG ASP LEU SER THR LYS ILE SEQRES 6 B 406 LYS ALA ALA PHE ALA ALA GLY LYS VAL PRO THR MET ALA SEQRES 7 B 406 GLN ALA PHE GLU ASN ASN ILE ALA LEU TYR LEU GLU ALA SEQRES 8 B 406 LYS ALA LEU LEU PRO ILE GLU SER LEU GLY VAL LYS LEU SEQRES 9 B 406 GLN GLY VAL ASN LEU THR PHE LEU ASN ALA VAL ARG PHE SEQRES 10 B 406 GLY GLY VAL VAL TYR GLY VAL PRO PHE ASN LYS SER ILE SEQRES 11 B 406 GLN VAL LEU TYR TYR ASN LYS ASP LEU LEU LYS LYS HIS SEQRES 12 B 406 GLY VAL PRO VAL PRO ALA THR LEU GLU GLU PHE VAL ALA SEQRES 13 B 406 ALA ALA LYS LYS LEU SER ARG ALA GLU GLY GLY PRO VAL SEQRES 14 B 406 TYR TRP PHE GLN PRO ASP ALA SER THR PHE ALA TYR PHE SEQRES 15 B 406 PHE PHE ASN LEU GLY GLY SER TYR LEU LYS ASP GLY LYS SEQRES 16 B 406 LEU VAL LEU ASN SER LYS GLU ALA VAL GLU ALA LEU THR SEQRES 17 B 406 LEU LEU GLN ASN GLY VAL LYS GLU GLY TRP ALA LYS PRO SEQRES 18 B 406 ILE THR SER GLY TYR ILE ASN GLN ASN LEU GLY SER GLY SEQRES 19 B 406 PRO TYR ALA PHE SER VAL ASP THR SER ALA GLY TYR THR SEQRES 20 B 406 ALA TYR LEU ARG ALA ALA LYS PHE ASP LEU GLY VAL ALA SEQRES 21 B 406 THR LEU PRO GLY ARG THR LYS GLY GLN PRO GLY TYR GLY SEQRES 22 B 406 LEU VAL GLN GLY THR ASN LEU VAL VAL PHE ARG GLN ALA SEQRES 23 B 406 SER LYS GLU GLU GLN ALA VAL ALA LYS ASP PHE LEU GLU SEQRES 24 B 406 PHE VAL LEU SER PRO ARG ALA GLN ALA VAL PHE ALA THR SEQRES 25 B 406 ALA THR GLY TYR VAL PRO VAL THR GLU GLY ALA LEU LYS SEQRES 26 B 406 ASP PRO VAL TYR GLN ALA TYR ALA ALA GLU ASN PRO ASP SEQRES 27 B 406 TYR ALA THR ILE VAL ARG GLN SER ARG TYR ALA LYS PHE SEQRES 28 B 406 GLU PRO ALA LEU ALA GLU TRP GLU GLN ILE ARG PHE ASP SEQRES 29 B 406 ILE LEU GLY GLN ALA ILE LYS GLU ALA ILE LEU ASN LYS SEQRES 30 B 406 ALA ASP PRO LYS ALA ALA LEU ASP ARG ALA GLN LYS LEU SEQRES 31 B 406 ALA GLU ASP LEU LEU SER SER ARG THR ARG HIS HIS HIS SEQRES 32 B 406 HIS HIS HIS HET FGO A 501 43 HET EDO B 501 4 HET FGO B 502 43 HETNAM FGO [(1S,3R,3AR,6AS)-3-(2-AZANYL-6-OXIDANYLIDENE-1H-PURIN- HETNAM 2 FGO 9-YL)-5,5-BIS(OXIDANYL)-1,3,3A,4,6,6A- HETNAM 3 FGO HEXAHYDROCYCLOPENTA[C]FURAN-1-YL]METHYL [(2R,3S,4R, HETNAM 4 FGO 5R)-5-[2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-2- HETNAM 5 FGO (HYDROXYMETHYL)-4-OXIDANYL-OXOLAN-3-YL] HYDROGEN HETNAM 6 FGO PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FGO 2(C22 H28 N7 O13 P) FORMUL 4 EDO C2 H6 O2 FORMUL 6 HOH *110(H2 O) HELIX 1 AA1 PRO A 2 ARG A 12 1 11 HELIX 2 AA2 GLY A 25 ALA A 42 1 18 HELIX 3 AA3 GLY A 55 GLY A 70 1 16 HELIX 4 AA4 PHE A 79 ALA A 89 1 11 HELIX 5 AA5 ILE A 95 GLY A 99 5 5 HELIX 6 AA6 ASN A 106 ALA A 112 1 7 HELIX 7 AA7 LYS A 135 HIS A 141 1 7 HELIX 8 AA8 THR A 148 GLY A 164 1 17 HELIX 9 AA9 ASP A 173 LEU A 184 1 12 HELIX 10 AB1 SER A 198 GLU A 214 1 17 HELIX 11 AB2 GLY A 243 ALA A 251 1 9 HELIX 12 AB3 SER A 285 LEU A 300 1 16 HELIX 13 AB4 SER A 301 GLY A 313 1 13 HELIX 14 AB5 GLU A 319 LYS A 323 5 5 HELIX 15 AB6 ASP A 324 GLU A 333 1 10 HELIX 16 AB7 PRO A 335 SER A 344 1 10 HELIX 17 AB8 GLU A 355 ILE A 363 1 9 HELIX 18 AB9 ILE A 363 LYS A 375 1 13 HELIX 19 AC1 ASP A 377 LEU A 393 1 17 HELIX 20 AC2 PRO B 2 ARG B 12 1 11 HELIX 21 AC3 GLY B 25 GLN B 43 1 19 HELIX 22 AC4 GLY B 55 GLY B 70 1 16 HELIX 23 AC5 PHE B 79 ALA B 89 1 11 HELIX 24 AC6 ILE B 95 GLY B 99 5 5 HELIX 25 AC7 ASN B 106 VAL B 113 1 8 HELIX 26 AC8 LYS B 135 HIS B 141 1 7 HELIX 27 AC9 THR B 148 GLY B 164 1 17 HELIX 28 AD1 ASP B 173 LEU B 184 1 12 HELIX 29 AD2 SER B 198 GLU B 214 1 17 HELIX 30 AD3 TYR B 224 ASN B 228 5 5 HELIX 31 AD4 GLY B 243 ALA B 251 1 9 HELIX 32 AD5 SER B 285 SER B 301 1 17 HELIX 33 AD6 SER B 301 GLY B 313 1 13 HELIX 34 AD7 THR B 318 LYS B 323 1 6 HELIX 35 AD8 ASP B 324 ASN B 334 1 11 HELIX 36 AD9 PRO B 335 ARG B 345 1 11 HELIX 37 AE1 GLU B 355 ILE B 363 1 9 HELIX 38 AE2 ILE B 363 LYS B 375 1 13 HELIX 39 AE3 ASP B 377 LEU B 392 1 16 SHEET 1 AA1 6 ARG A 46 PRO A 52 0 SHEET 2 AA1 6 VAL A 15 HIS A 21 1 N LEU A 19 O ARG A 49 SHEET 3 AA1 6 MET A 75 ALA A 78 1 O MET A 75 N GLU A 18 SHEET 4 AA1 6 GLY A 271 VAL A 280 -1 O VAL A 279 N ALA A 76 SHEET 5 AA1 6 VAL A 122 ASN A 134 -1 N VAL A 122 O LEU A 278 SHEET 6 AA1 6 LEU A 255 ALA A 258 -1 O GLY A 256 N TYR A 133 SHEET 1 AA2 4 PHE A 236 THR A 240 0 SHEET 2 AA2 4 VAL A 122 ASN A 134 -1 N VAL A 130 O ASP A 239 SHEET 3 AA2 4 GLY A 271 VAL A 280 -1 O LEU A 278 N VAL A 122 SHEET 4 AA2 4 ALA A 347 LYS A 348 1 O LYS A 348 N GLY A 271 SHEET 1 AA3 2 ARG A 114 PHE A 115 0 SHEET 2 AA3 2 VAL A 118 VAL A 119 -1 O VAL A 118 N PHE A 115 SHEET 1 AA4 2 TYR A 168 PHE A 170 0 SHEET 2 AA4 2 ALA A 217 PRO A 219 1 O LYS A 218 N TYR A 168 SHEET 1 AA5 2 LEU A 189 LYS A 190 0 SHEET 2 AA5 2 LYS A 193 LEU A 194 -1 O LYS A 193 N LYS A 190 SHEET 1 AA6 6 ARG B 46 PRO B 52 0 SHEET 2 AA6 6 VAL B 15 HIS B 21 1 N ALA B 17 O CYS B 47 SHEET 3 AA6 6 MET B 75 ALA B 78 1 O MET B 75 N GLU B 18 SHEET 4 AA6 6 GLY B 271 VAL B 280 -1 O VAL B 279 N ALA B 76 SHEET 5 AA6 6 VAL B 122 ASN B 134 -1 N VAL B 122 O LEU B 278 SHEET 6 AA6 6 LEU B 255 ALA B 258 -1 O GLY B 256 N TYR B 133 SHEET 1 AA7 4 PHE B 236 THR B 240 0 SHEET 2 AA7 4 VAL B 122 ASN B 134 -1 N TYR B 132 O SER B 237 SHEET 3 AA7 4 GLY B 271 VAL B 280 -1 O LEU B 278 N VAL B 122 SHEET 4 AA7 4 ALA B 347 LYS B 348 1 O LYS B 348 N GLY B 271 SHEET 1 AA8 2 ARG B 114 PHE B 115 0 SHEET 2 AA8 2 VAL B 118 VAL B 119 -1 O VAL B 118 N PHE B 115 SHEET 1 AA9 2 TYR B 168 PHE B 170 0 SHEET 2 AA9 2 ALA B 217 PRO B 219 1 O LYS B 218 N TYR B 168 SHEET 1 AB1 2 LEU B 189 LYS B 190 0 SHEET 2 AB1 2 LYS B 193 LEU B 194 -1 O LYS B 193 N LYS B 190 SITE 1 AC1 18 TYR A 56 ARG A 57 PHE A 79 ASN A 81 SITE 2 AC1 18 SER A 127 TYR A 224 ASN A 226 THR A 240 SITE 3 AC1 18 ALA A 242 GLY A 243 GLN A 274 GLY A 275 SITE 4 AC1 18 TYR A 314 GLU A 357 ARG A 360 PHE A 361 SITE 5 AC1 18 HOH A 601 HOH A 633 SITE 1 AC2 4 ASN B 183 ARG B 263 GLN B 267 PRO B 268 SITE 1 AC3 14 PRO B 28 TYR B 56 ARG B 57 PHE B 79 SITE 2 AC3 14 ASN B 81 SER B 127 TYR B 224 ASN B 226 SITE 3 AC3 14 THR B 240 GLN B 274 GLY B 275 TYR B 314 SITE 4 AC3 14 GLU B 357 ARG B 360 CRYST1 58.800 104.390 65.740 90.00 90.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015211 0.00000