HEADER TRANSPORT PROTEIN 02-MAY-20 7C14 TITLE CRYSTAL STRUCTURE OF A DINUCLEOTIDE-BINDING PROTEIN (Q274A) OF ABC TITLE 2 TRANSPORTER ENDOGENOUSLY BOUND TO URIDYLYL-3'-5'-PHOSPHO-GUANOSINE TITLE 3 (FORM I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER, PERIPLASMIC SUGAR-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 ATCC: 27634; SOURCE 5 GENE: TTHA0379; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS C-DI-GMP/AMP, SUBSTRATE-BINDING PROTEIN, THERMUS THERMOPHILUS, TRNA KEYWDS 2 SYNTHESIS AND/OR MODIFICATION, VENUS FLY-TRAP MECHANISM, UGPB, KEYWDS 3 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,M.CHANDRAVANSHI,R.SAMANTA REVDAT 3 29-NOV-23 7C14 1 REMARK REVDAT 2 18-AUG-21 7C14 1 JRNL REVDAT 1 10-MAR-21 7C14 0 JRNL AUTH M.CHANDRAVANSHI,R.SAMANTA,S.P.KANAUJIA JRNL TITL STRUCTURAL AND THERMODYNAMIC INSIGHTS INTO THE NOVEL JRNL TITL 2 DINUCLEOTIDE-BINDING PROTEIN OF ABC TRANSPORTER UNVEILS ITS JRNL TITL 3 MOONLIGHTING FUNCTION. JRNL REF FEBS J. V. 288 4614 2021 JRNL REFN ISSN 1742-464X JRNL PMID 33599038 JRNL DOI 10.1111/FEBS.15774 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1778 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2560 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6084 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -1.37000 REMARK 3 B33 (A**2) : 1.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.480 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.255 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.903 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.825 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6353 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5971 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8635 ; 1.720 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13849 ; 1.276 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 793 ; 6.935 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;36.168 ;23.108 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1015 ;17.509 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.831 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 803 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7087 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1325 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 394 B 1 394 12633 0.050 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 395 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7832 4.3515 5.6503 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: 0.1182 REMARK 3 T33: 0.1648 T12: 0.0081 REMARK 3 T13: -0.0514 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.0321 L22: 1.2142 REMARK 3 L33: 0.9708 L12: -0.5797 REMARK 3 L13: -0.5046 L23: 0.3693 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: -0.0811 S13: 0.0357 REMARK 3 S21: 0.0630 S22: 0.0884 S23: -0.0298 REMARK 3 S31: 0.0012 S32: 0.0129 S33: 0.0117 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 395 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8273 -13.3340 55.0396 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: 0.1104 REMARK 3 T33: 0.1574 T12: -0.0029 REMARK 3 T13: -0.0190 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.9738 L22: 1.1879 REMARK 3 L33: 1.0107 L12: 0.4996 REMARK 3 L13: 0.4515 L23: 0.3223 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: 0.0615 S13: -0.0331 REMARK 3 S21: -0.0741 S22: 0.0548 S23: -0.0141 REMARK 3 S31: -0.0225 S32: -0.0250 S33: 0.0175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7C14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300016837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 66.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.24200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7C0F REMARK 200 REMARK 200 REMARK: MONOCLINIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM PHOSPHATE, 0.1M SODIUM REMARK 280 CACODYLATE PH 6.5, 30% PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.14500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ARG A 396 REMARK 465 THR A 397 REMARK 465 ARG A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 MET B -1 REMARK 465 MET B 0 REMARK 465 ARG B 396 REMARK 465 THR B 397 REMARK 465 ARG B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 80 CD GLU A 80 OE2 0.090 REMARK 500 GLU B 80 CD GLU B 80 OE2 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 124 -73.23 -110.49 REMARK 500 ALA A 274 -156.49 -139.48 REMARK 500 TYR A 346 74.35 -118.61 REMARK 500 PHE A 361 -60.74 -100.62 REMARK 500 ASN B 106 128.74 -38.15 REMARK 500 PHE B 124 -72.95 -110.01 REMARK 500 ALA B 274 -155.77 -139.40 REMARK 500 TYR B 346 76.16 -116.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 757 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 758 DISTANCE = 6.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FGO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FGO B 503 DBREF 7C14 A 1 398 UNP Q5SLB4 Q5SLB4_THET8 20 417 DBREF 7C14 B 1 398 UNP Q5SLB4 Q5SLB4_THET8 20 417 SEQADV 7C14 MET A -1 UNP Q5SLB4 INITIATING METHIONINE SEQADV 7C14 MET A 0 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 ALA A 274 UNP Q5SLB4 GLN 293 ENGINEERED MUTATION SEQADV 7C14 HIS A 399 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 HIS A 400 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 HIS A 401 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 HIS A 402 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 HIS A 403 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 HIS A 404 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 MET B -1 UNP Q5SLB4 INITIATING METHIONINE SEQADV 7C14 MET B 0 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 ALA B 274 UNP Q5SLB4 GLN 293 ENGINEERED MUTATION SEQADV 7C14 HIS B 399 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 HIS B 400 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 HIS B 401 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 HIS B 402 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 HIS B 403 UNP Q5SLB4 EXPRESSION TAG SEQADV 7C14 HIS B 404 UNP Q5SLB4 EXPRESSION TAG SEQRES 1 A 406 MET MET LYS PRO GLU ASP VAL ILE LYS GLU GLN CYS ALA SEQRES 2 A 406 ARG ALA LYS VAL VAL ALA GLU LEU TRP HIS GLY PHE THR SEQRES 3 A 406 GLY GLY ALA PRO LYS ALA ALA LEU GLU ASN LEU VAL VAL SEQRES 4 A 406 GLU PHE ASN LYS ALA GLN GLN GLY ARG CYS VAL ARG PRO SEQRES 5 A 406 VAL PRO GLN GLY GLY TYR ARG ASP LEU SER THR LYS ILE SEQRES 6 A 406 LYS ALA ALA PHE ALA ALA GLY LYS VAL PRO THR MET ALA SEQRES 7 A 406 GLN ALA PHE GLU ASN ASN ILE ALA LEU TYR LEU GLU ALA SEQRES 8 A 406 LYS ALA LEU LEU PRO ILE GLU SER LEU GLY VAL LYS LEU SEQRES 9 A 406 GLN GLY VAL ASN LEU THR PHE LEU ASN ALA VAL ARG PHE SEQRES 10 A 406 GLY GLY VAL VAL TYR GLY VAL PRO PHE ASN LYS SER ILE SEQRES 11 A 406 GLN VAL LEU TYR TYR ASN LYS ASP LEU LEU LYS LYS HIS SEQRES 12 A 406 GLY VAL PRO VAL PRO ALA THR LEU GLU GLU PHE VAL ALA SEQRES 13 A 406 ALA ALA LYS LYS LEU SER ARG ALA GLU GLY GLY PRO VAL SEQRES 14 A 406 TYR TRP PHE GLN PRO ASP ALA SER THR PHE ALA TYR PHE SEQRES 15 A 406 PHE PHE ASN LEU GLY GLY SER TYR LEU LYS ASP GLY LYS SEQRES 16 A 406 LEU VAL LEU ASN SER LYS GLU ALA VAL GLU ALA LEU THR SEQRES 17 A 406 LEU LEU GLN ASN GLY VAL LYS GLU GLY TRP ALA LYS PRO SEQRES 18 A 406 ILE THR SER GLY TYR ILE ASN GLN ASN LEU GLY SER GLY SEQRES 19 A 406 PRO TYR ALA PHE SER VAL ASP THR SER ALA GLY TYR THR SEQRES 20 A 406 TYR TYR LEU ARG ALA ALA LYS PHE ASP LEU GLY VAL ALA SEQRES 21 A 406 THR LEU PRO GLY ARG THR LYS GLY GLN PRO GLY TYR GLY SEQRES 22 A 406 LEU VAL ALA GLY THR ASN LEU VAL VAL PHE ARG GLN ALA SEQRES 23 A 406 SER LYS GLU GLU GLN ALA VAL ALA LYS ASP PHE LEU GLU SEQRES 24 A 406 PHE VAL LEU SER PRO ARG ALA GLN ALA VAL PHE ALA THR SEQRES 25 A 406 ALA THR GLY TYR VAL PRO VAL THR GLU GLY ALA LEU LYS SEQRES 26 A 406 ASP PRO VAL TYR GLN ALA TYR ALA ALA GLU ASN PRO ASP SEQRES 27 A 406 TYR ALA THR ILE VAL ARG GLN SER ARG TYR ALA LYS PHE SEQRES 28 A 406 GLU PRO ALA LEU ALA GLU TRP GLU GLN ILE ARG PHE ASP SEQRES 29 A 406 ILE LEU GLY GLN ALA ILE LYS GLU ALA ILE LEU ASN LYS SEQRES 30 A 406 ALA ASP PRO LYS ALA ALA LEU ASP ARG ALA GLN LYS LEU SEQRES 31 A 406 ALA GLU ASP LEU LEU SER SER ARG THR ARG HIS HIS HIS SEQRES 32 A 406 HIS HIS HIS SEQRES 1 B 406 MET MET LYS PRO GLU ASP VAL ILE LYS GLU GLN CYS ALA SEQRES 2 B 406 ARG ALA LYS VAL VAL ALA GLU LEU TRP HIS GLY PHE THR SEQRES 3 B 406 GLY GLY ALA PRO LYS ALA ALA LEU GLU ASN LEU VAL VAL SEQRES 4 B 406 GLU PHE ASN LYS ALA GLN GLN GLY ARG CYS VAL ARG PRO SEQRES 5 B 406 VAL PRO GLN GLY GLY TYR ARG ASP LEU SER THR LYS ILE SEQRES 6 B 406 LYS ALA ALA PHE ALA ALA GLY LYS VAL PRO THR MET ALA SEQRES 7 B 406 GLN ALA PHE GLU ASN ASN ILE ALA LEU TYR LEU GLU ALA SEQRES 8 B 406 LYS ALA LEU LEU PRO ILE GLU SER LEU GLY VAL LYS LEU SEQRES 9 B 406 GLN GLY VAL ASN LEU THR PHE LEU ASN ALA VAL ARG PHE SEQRES 10 B 406 GLY GLY VAL VAL TYR GLY VAL PRO PHE ASN LYS SER ILE SEQRES 11 B 406 GLN VAL LEU TYR TYR ASN LYS ASP LEU LEU LYS LYS HIS SEQRES 12 B 406 GLY VAL PRO VAL PRO ALA THR LEU GLU GLU PHE VAL ALA SEQRES 13 B 406 ALA ALA LYS LYS LEU SER ARG ALA GLU GLY GLY PRO VAL SEQRES 14 B 406 TYR TRP PHE GLN PRO ASP ALA SER THR PHE ALA TYR PHE SEQRES 15 B 406 PHE PHE ASN LEU GLY GLY SER TYR LEU LYS ASP GLY LYS SEQRES 16 B 406 LEU VAL LEU ASN SER LYS GLU ALA VAL GLU ALA LEU THR SEQRES 17 B 406 LEU LEU GLN ASN GLY VAL LYS GLU GLY TRP ALA LYS PRO SEQRES 18 B 406 ILE THR SER GLY TYR ILE ASN GLN ASN LEU GLY SER GLY SEQRES 19 B 406 PRO TYR ALA PHE SER VAL ASP THR SER ALA GLY TYR THR SEQRES 20 B 406 TYR TYR LEU ARG ALA ALA LYS PHE ASP LEU GLY VAL ALA SEQRES 21 B 406 THR LEU PRO GLY ARG THR LYS GLY GLN PRO GLY TYR GLY SEQRES 22 B 406 LEU VAL ALA GLY THR ASN LEU VAL VAL PHE ARG GLN ALA SEQRES 23 B 406 SER LYS GLU GLU GLN ALA VAL ALA LYS ASP PHE LEU GLU SEQRES 24 B 406 PHE VAL LEU SER PRO ARG ALA GLN ALA VAL PHE ALA THR SEQRES 25 B 406 ALA THR GLY TYR VAL PRO VAL THR GLU GLY ALA LEU LYS SEQRES 26 B 406 ASP PRO VAL TYR GLN ALA TYR ALA ALA GLU ASN PRO ASP SEQRES 27 B 406 TYR ALA THR ILE VAL ARG GLN SER ARG TYR ALA LYS PHE SEQRES 28 B 406 GLU PRO ALA LEU ALA GLU TRP GLU GLN ILE ARG PHE ASP SEQRES 29 B 406 ILE LEU GLY GLN ALA ILE LYS GLU ALA ILE LEU ASN LYS SEQRES 30 B 406 ALA ASP PRO LYS ALA ALA LEU ASP ARG ALA GLN LYS LEU SEQRES 31 B 406 ALA GLU ASP LEU LEU SER SER ARG THR ARG HIS HIS HIS SEQRES 32 B 406 HIS HIS HIS HET GOL A 501 6 HET GOL A 502 6 HET FGO A 503 43 HET EDO B 501 4 HET PEG B 502 7 HET FGO B 503 43 HETNAM GOL GLYCEROL HETNAM FGO [(1S,3R,3AR,6AS)-3-(2-AZANYL-6-OXIDANYLIDENE-1H-PURIN- HETNAM 2 FGO 9-YL)-5,5-BIS(OXIDANYL)-1,3,3A,4,6,6A- HETNAM 3 FGO HEXAHYDROCYCLOPENTA[C]FURAN-1-YL]METHYL [(2R,3S,4R, HETNAM 4 FGO 5R)-5-[2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-2- HETNAM 5 FGO (HYDROXYMETHYL)-4-OXIDANYL-OXOLAN-3-YL] HYDROGEN HETNAM 6 FGO PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 FGO 2(C22 H28 N7 O13 P) FORMUL 6 EDO C2 H6 O2 FORMUL 7 PEG C4 H10 O3 FORMUL 9 HOH *317(H2 O) HELIX 1 AA1 LYS A 1 ARG A 12 1 12 HELIX 2 AA2 GLY A 25 ALA A 42 1 18 HELIX 3 AA3 GLY A 55 GLY A 70 1 16 HELIX 4 AA4 PHE A 79 ALA A 89 1 11 HELIX 5 AA5 ASN A 106 VAL A 113 1 8 HELIX 6 AA6 LYS A 135 HIS A 141 1 7 HELIX 7 AA7 THR A 148 GLY A 164 1 17 HELIX 8 AA8 ASP A 173 ASN A 183 1 11 HELIX 9 AA9 SER A 198 GLU A 214 1 17 HELIX 10 AB1 TYR A 224 ASN A 228 5 5 HELIX 11 AB2 GLY A 243 ALA A 251 1 9 HELIX 12 AB3 SER A 285 LEU A 300 1 16 HELIX 13 AB4 SER A 301 GLY A 313 1 13 HELIX 14 AB5 THR A 318 LYS A 323 1 6 HELIX 15 AB6 ASP A 324 ASN A 334 1 11 HELIX 16 AB7 PRO A 335 ARG A 345 1 11 HELIX 17 AB8 GLU A 355 ILE A 363 1 9 HELIX 18 AB9 ILE A 363 ASN A 374 1 12 HELIX 19 AC1 ASP A 377 SER A 395 1 19 HELIX 20 AC2 PRO B 2 ARG B 12 1 11 HELIX 21 AC3 GLY B 25 ALA B 42 1 18 HELIX 22 AC4 GLY B 55 GLY B 70 1 16 HELIX 23 AC5 PHE B 79 ALA B 89 1 11 HELIX 24 AC6 ASN B 106 VAL B 113 1 8 HELIX 25 AC7 LYS B 135 HIS B 141 1 7 HELIX 26 AC8 THR B 148 GLY B 164 1 17 HELIX 27 AC9 ASP B 173 LEU B 184 1 12 HELIX 28 AD1 SER B 198 GLU B 214 1 17 HELIX 29 AD2 TYR B 224 ASN B 228 5 5 HELIX 30 AD3 GLY B 243 ALA B 251 1 9 HELIX 31 AD4 SER B 285 LEU B 300 1 16 HELIX 32 AD5 SER B 301 GLY B 313 1 13 HELIX 33 AD6 THR B 318 LYS B 323 1 6 HELIX 34 AD7 ASP B 324 ASN B 334 1 11 HELIX 35 AD8 PRO B 335 ARG B 345 1 11 HELIX 36 AD9 GLU B 355 ILE B 363 1 9 HELIX 37 AE1 ILE B 363 ASN B 374 1 12 HELIX 38 AE2 ASP B 377 SER B 395 1 19 SHEET 1 AA1 6 ARG A 46 PRO A 52 0 SHEET 2 AA1 6 VAL A 15 HIS A 21 1 N ALA A 17 O CYS A 47 SHEET 3 AA1 6 MET A 75 ALA A 78 1 O MET A 75 N GLU A 18 SHEET 4 AA1 6 GLY A 271 VAL A 280 -1 O VAL A 279 N ALA A 76 SHEET 5 AA1 6 VAL A 122 ASN A 134 -1 N VAL A 122 O LEU A 278 SHEET 6 AA1 6 LEU A 255 ALA A 258 -1 O GLY A 256 N TYR A 133 SHEET 1 AA2 4 PHE A 236 THR A 240 0 SHEET 2 AA2 4 VAL A 122 ASN A 134 -1 N VAL A 130 O ASP A 239 SHEET 3 AA2 4 GLY A 271 VAL A 280 -1 O LEU A 278 N VAL A 122 SHEET 4 AA2 4 ALA A 347 LYS A 348 1 O LYS A 348 N GLY A 271 SHEET 1 AA3 2 ARG A 114 PHE A 115 0 SHEET 2 AA3 2 VAL A 118 VAL A 119 -1 O VAL A 118 N PHE A 115 SHEET 1 AA4 2 TYR A 168 PHE A 170 0 SHEET 2 AA4 2 ALA A 217 PRO A 219 1 O LYS A 218 N TYR A 168 SHEET 1 AA5 2 LEU A 189 LYS A 190 0 SHEET 2 AA5 2 LYS A 193 LEU A 194 -1 O LYS A 193 N LYS A 190 SHEET 1 AA6 6 ARG B 46 PRO B 52 0 SHEET 2 AA6 6 VAL B 15 HIS B 21 1 N ALA B 17 O CYS B 47 SHEET 3 AA6 6 MET B 75 ALA B 78 1 O MET B 75 N GLU B 18 SHEET 4 AA6 6 GLY B 271 VAL B 280 -1 O VAL B 279 N ALA B 76 SHEET 5 AA6 6 VAL B 122 ASN B 134 -1 N VAL B 122 O LEU B 278 SHEET 6 AA6 6 LEU B 255 ALA B 258 -1 O ALA B 258 N LEU B 131 SHEET 1 AA7 4 PHE B 236 THR B 240 0 SHEET 2 AA7 4 VAL B 122 ASN B 134 -1 N VAL B 130 O ASP B 239 SHEET 3 AA7 4 GLY B 271 VAL B 280 -1 O LEU B 278 N VAL B 122 SHEET 4 AA7 4 ALA B 347 LYS B 348 1 O LYS B 348 N GLY B 271 SHEET 1 AA8 2 ARG B 114 PHE B 115 0 SHEET 2 AA8 2 VAL B 118 VAL B 119 -1 O VAL B 118 N PHE B 115 SHEET 1 AA9 2 TYR B 168 PHE B 170 0 SHEET 2 AA9 2 ALA B 217 PRO B 219 1 O LYS B 218 N TYR B 168 SHEET 1 AB1 2 LEU B 189 LYS B 190 0 SHEET 2 AB1 2 LYS B 193 LEU B 194 -1 O LYS B 193 N LYS B 190 SITE 1 AC1 5 ASN A 134 GLY A 230 GLY A 232 PRO A 233 SITE 2 AC1 5 TYR A 234 SITE 1 AC2 7 PHE A 182 ASN A 183 GLY A 262 ARG A 263 SITE 2 AC2 7 GLN A 267 PRO A 268 GLY A 269 SITE 1 AC3 18 TYR A 56 ARG A 57 PHE A 79 ASN A 81 SITE 2 AC3 18 SER A 127 TYR A 224 ASN A 226 THR A 240 SITE 3 AC3 18 ALA A 242 GLY A 243 TYR A 246 ALA A 274 SITE 4 AC3 18 GLY A 275 TYR A 314 GLU A 357 ARG A 360 SITE 5 AC3 18 HOH A 605 HOH A 737 SITE 1 AC4 4 LEU B 229 GLY B 230 LYS B 252 PHE B 253 SITE 1 AC5 5 GLY B 266 GLN B 267 ARG B 342 TYR B 346 SITE 2 AC5 5 HOH B 689 SITE 1 AC6 18 TYR B 56 ARG B 57 PHE B 79 ASN B 81 SITE 2 AC6 18 SER B 127 TYR B 224 ASN B 226 THR B 240 SITE 3 AC6 18 ALA B 242 GLY B 243 TYR B 246 ALA B 274 SITE 4 AC6 18 GLY B 275 TYR B 314 GLU B 357 ARG B 360 SITE 5 AC6 18 HOH B 634 HOH B 736 CRYST1 66.200 58.290 121.900 90.00 94.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015106 0.000000 0.001263 0.00000 SCALE2 0.000000 0.017156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008232 0.00000