HEADER ANTIMICROBIAL PROTEIN 10-MAY-20 7C31 TITLE CRYSTAL STRUCTURE OF THE GRAPEVINE DEFENSIN VVK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KNOT1 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: VITIS VINIFERA; SOURCE 4 ORGANISM_COMMON: GRAPE; SOURCE 5 ORGANISM_TAXID: 29760 KEYWDS CYSTEINE-RICH, ANTIMICROBIAL, ANTIFUNGAL, IMMUNOMODULATORY, PLANT KEYWDS 2 DEFENSIN, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.CHEN,S.C.CHANG,K.G.CHANDY,D.LUO REVDAT 2 29-NOV-23 7C31 1 REMARK REVDAT 1 16-SEP-20 7C31 0 JRNL AUTH S.T.ONG,S.BAJAJ,M.R.TANNER,S.C.CHANG,B.KRISHNARJUNA,X.R.NG, JRNL AUTH 2 R.A.V.MORALES,M.W.CHEN,D.LUO,D.PATEL,S.YASMIN,J.J.H.NG, JRNL AUTH 3 Z.ZHUANG,H.M.NGUYEN,A.EL SAHILI,J.LESCAR,R.PATIL, JRNL AUTH 4 S.A.CHARMAN,E.G.ROBINS,J.L.GOGGI,P.W.TAN,P.SADASIVAM, JRNL AUTH 5 B.RAMASAMY,S.V.HARTIMATH,V.DHAWAN,J.BEDNENKO,P.COLUSSI, JRNL AUTH 6 H.WULFF,M.W.PENNINGTON,S.KUYUCAK,R.S.NORTON,C.BEETON, JRNL AUTH 7 K.G.CHANDY JRNL TITL MODULATION OF LYMPHOCYTE POTASSIUM CHANNEL KV1.3 BY JRNL TITL 2 MEMBRANE-PENETRATING, JOINT-TARGETING IMMUNOMODULATORY PLANT JRNL TITL 3 DEFENSIN. JRNL REF ACS PHARMACOL TRANSL SCI V. 3 720 2020 JRNL REFN ESSN 2575-910 JRNL PMID 32832873 JRNL DOI 10.1021/ACSPTSCI.0C00035 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3845 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8500 - 2.4900 1.00 2517 164 0.1520 0.1802 REMARK 3 2 2.4800 - 1.9700 1.00 2536 121 0.1595 0.1766 REMARK 3 3 1.9700 - 1.7200 1.00 2542 101 0.1764 0.1954 REMARK 3 4 1.7200 - 1.5700 1.00 2513 143 0.1642 0.1759 REMARK 3 5 1.5700 - 1.4500 1.00 2498 162 0.1851 0.1984 REMARK 3 6 1.4500 - 1.3700 1.00 2525 132 0.2282 0.2411 REMARK 3 7 1.3700 - 1.3000 1.00 2501 148 0.2576 0.2754 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.137 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.831 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 742 REMARK 3 ANGLE : 1.617 984 REMARK 3 CHIRALITY : 0.201 99 REMARK 3 PLANARITY : 0.006 132 REMARK 3 DIHEDRAL : 5.025 110 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6152 49.7699 2.4258 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1731 REMARK 3 T33: 0.1743 T12: 0.0545 REMARK 3 T13: -0.0317 T23: -0.0595 REMARK 3 L TENSOR REMARK 3 L11: 3.1771 L22: 1.9578 REMARK 3 L33: 3.8258 L12: -0.6174 REMARK 3 L13: 3.4377 L23: -0.7658 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: 0.2931 S13: -0.1693 REMARK 3 S21: 0.0393 S22: 0.1592 S23: -0.3648 REMARK 3 S31: 0.2467 S32: 0.6627 S33: -0.1871 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.6414 56.7496 -5.0191 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.1363 REMARK 3 T33: 0.1738 T12: 0.0178 REMARK 3 T13: -0.0090 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 5.7219 L22: 3.7767 REMARK 3 L33: 8.2231 L12: 2.0654 REMARK 3 L13: -0.8597 L23: -3.9450 REMARK 3 S TENSOR REMARK 3 S11: -0.0606 S12: 0.2464 S13: -0.2248 REMARK 3 S21: -0.2256 S22: 0.1738 S23: 0.3533 REMARK 3 S31: -0.2424 S32: -0.4658 S33: -0.1324 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.1654 60.7791 2.5463 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.1180 REMARK 3 T33: 0.1123 T12: 0.0336 REMARK 3 T13: -0.0017 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 4.4312 L22: 6.5831 REMARK 3 L33: 9.0154 L12: -0.2263 REMARK 3 L13: -1.8194 L23: -1.8329 REMARK 3 S TENSOR REMARK 3 S11: -0.1614 S12: -0.3613 S13: 0.2103 REMARK 3 S21: 0.3131 S22: 0.1455 S23: 0.1651 REMARK 3 S31: -0.2406 S32: 0.0741 S33: 0.0462 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.9788 55.9649 2.2139 REMARK 3 T TENSOR REMARK 3 T11: 0.1212 T22: 0.1125 REMARK 3 T33: 0.1081 T12: 0.0280 REMARK 3 T13: 0.0083 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.2461 L22: 3.4247 REMARK 3 L33: 9.8847 L12: -0.1405 REMARK 3 L13: 0.9739 L23: -0.6714 REMARK 3 S TENSOR REMARK 3 S11: -0.0731 S12: -0.0551 S13: -0.0175 REMARK 3 S21: 0.2001 S22: 0.1809 S23: 0.0944 REMARK 3 S31: 0.0384 S32: 0.0918 S33: -0.0060 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1671 53.7263 -3.0999 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.0801 REMARK 3 T33: 0.0866 T12: 0.0339 REMARK 3 T13: 0.0110 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.4241 L22: 2.2557 REMARK 3 L33: 5.3140 L12: 0.6837 REMARK 3 L13: 0.2870 L23: -0.4856 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: 0.0960 S13: -0.1181 REMARK 3 S21: -0.0764 S22: 0.0959 S23: -0.0830 REMARK 3 S31: 0.4954 S32: 0.1650 S33: -0.0500 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0256 42.7376 -1.0045 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.1485 REMARK 3 T33: 0.1437 T12: 0.0072 REMARK 3 T13: -0.0033 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 8.4671 L22: 3.5523 REMARK 3 L33: 2.9115 L12: -0.9099 REMARK 3 L13: -2.4162 L23: 0.0719 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.4170 S13: 0.2690 REMARK 3 S21: -0.2088 S22: 0.0267 S23: -0.1337 REMARK 3 S31: -0.0340 S32: -0.1885 S33: -0.0466 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4998 36.9702 1.0065 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.1150 REMARK 3 T33: 0.1199 T12: 0.0322 REMARK 3 T13: 0.0143 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 4.1567 L22: 4.3257 REMARK 3 L33: 6.4555 L12: 0.1520 REMARK 3 L13: -2.4403 L23: 0.4578 REMARK 3 S TENSOR REMARK 3 S11: -0.1498 S12: -0.1058 S13: -0.3692 REMARK 3 S21: -0.0968 S22: 0.0592 S23: 0.0362 REMARK 3 S31: 0.1068 S32: 0.0333 S33: 0.0986 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3885 43.7173 -3.3050 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.1323 REMARK 3 T33: 0.1367 T12: 0.0442 REMARK 3 T13: -0.0150 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 5.2707 L22: 4.4870 REMARK 3 L33: 1.8284 L12: 0.7280 REMARK 3 L13: -1.3036 L23: -1.6253 REMARK 3 S TENSOR REMARK 3 S11: 0.0643 S12: 0.2498 S13: 0.2307 REMARK 3 S21: -0.4965 S22: -0.0432 S23: 0.1679 REMARK 3 S31: -0.1224 S32: -0.1162 S33: -0.0365 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300016929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18614 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 27.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57950 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4UJ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 0.2M MGCL2, 0.1M TRIS REMARK 280 -HCL PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.80250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.70375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.90125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 38 O HOH A 101 1.32 REMARK 500 HH21 ARG B 25 O HOH B 101 1.51 REMARK 500 O HOH A 141 O HOH A 144 1.75 REMARK 500 NH1 ARG A 38 O HOH A 101 2.10 REMARK 500 SG CYS B 3 O HOH B 123 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 147 O HOH B 127 1465 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 46 CB - CG - CD1 ANGL. DEV. = 29.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 39 103.02 -58.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 7C31 A 1 47 UNP F6HGI0 F6HGI0_VITVI 28 74 DBREF 7C31 B 1 47 UNP F6HGI0 F6HGI0_VITVI 28 74 SEQRES 1 A 47 ARG VAL CYS GLU SER GLN SER HIS LYS PHE GLU GLY ALA SEQRES 2 A 47 CYS MET GLY ASP HIS ASN CYS ALA LEU VAL CYS ARG ASN SEQRES 3 A 47 GLU GLY PHE SER GLY GLY LYS CYS LYS GLY LEU ARG ARG SEQRES 4 A 47 ARG CYS PHE CYS THR LYS LEU CYS SEQRES 1 B 47 ARG VAL CYS GLU SER GLN SER HIS LYS PHE GLU GLY ALA SEQRES 2 B 47 CYS MET GLY ASP HIS ASN CYS ALA LEU VAL CYS ARG ASN SEQRES 3 B 47 GLU GLY PHE SER GLY GLY LYS CYS LYS GLY LEU ARG ARG SEQRES 4 B 47 ARG CYS PHE CYS THR LYS LEU CYS FORMUL 3 HOH *87(H2 O) HELIX 1 AA1 GLY A 16 GLU A 27 1 12 HELIX 2 AA2 GLY B 16 GLU B 27 1 12 SHEET 1 AA1 3 VAL A 2 GLN A 6 0 SHEET 2 AA1 3 ARG A 40 LEU A 46 -1 O LYS A 45 N CYS A 3 SHEET 3 AA1 3 GLY A 31 LYS A 35 -1 N LYS A 33 O PHE A 42 SHEET 1 AA2 3 VAL B 2 GLN B 6 0 SHEET 2 AA2 3 ARG B 40 LEU B 46 -1 O LYS B 45 N CYS B 3 SHEET 3 AA2 3 GLY B 31 LYS B 35 -1 N LYS B 35 O ARG B 40 SSBOND 1 CYS A 3 CYS A 47 1555 1555 2.05 SSBOND 2 CYS A 14 CYS A 34 1555 1555 1.98 SSBOND 3 CYS A 20 CYS A 41 1555 1555 2.04 SSBOND 4 CYS A 24 CYS A 43 1555 1555 2.05 SSBOND 5 CYS B 3 CYS B 47 1555 1555 2.00 SSBOND 6 CYS B 14 CYS B 34 1555 1555 2.03 SSBOND 7 CYS B 20 CYS B 41 1555 1555 2.03 SSBOND 8 CYS B 24 CYS B 43 1555 1555 2.01 CRYST1 27.854 27.854 99.605 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035901 0.000000 0.000000 0.00000 SCALE2 0.000000 0.035901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010040 0.00000