HEADER HYDROLASE 11-MAY-20 7C33 TITLE MACRO DOMAIN OF SARS-COV-2 IN COMPLEX WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PP1A,ORF1A POLYPROTEIN,NSP3,PL2-PRO,PAPAIN-LIKE PROTEASE, COMPND 5 PAPAIN-LIKE PROTEINASE,PL-PRO,MACRO DOMAIN FROM NON-STRUCTURAL COMPND 6 PROTEIN 3; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COVID-19, SARS-COV-2, MACRO DOMAIN, ADP-RIBOSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.H.LIN,C.H.HSU REVDAT 4 29-NOV-23 7C33 1 REMARK REVDAT 3 10-MAR-21 7C33 1 COMPND REVDAT 2 02-DEC-20 7C33 1 JRNL REVDAT 1 11-NOV-20 7C33 0 JRNL AUTH M.H.LIN,S.C.CHANG,Y.C.CHIU,B.C.JIANG,T.H.WU,C.H.HSU JRNL TITL STRUCTURAL, BIOPHYSICAL, AND BIOCHEMICAL ELUCIDATION OF THE JRNL TITL 2 SARS-COV-2 NONSTRUCTURAL PROTEIN 3 MACRO DOMAIN. JRNL REF ACS INFECT DIS. V. 6 2970 2020 JRNL REFN ESSN 2373-8227 JRNL PMID 32946224 JRNL DOI 10.1021/ACSINFECDIS.0C00441 REMARK 2 REMARK 2 RESOLUTION. 3.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 9352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.830 REMARK 3 FREE R VALUE TEST SET COUNT : 919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7400 - 7.2900 0.96 1257 143 0.1981 0.1934 REMARK 3 2 7.2900 - 5.8000 0.99 1290 141 0.2225 0.2840 REMARK 3 3 5.8000 - 5.0700 1.00 1278 149 0.2485 0.2728 REMARK 3 4 5.0700 - 4.6100 0.99 1300 138 0.2290 0.2740 REMARK 3 5 4.6100 - 4.2800 0.98 1267 140 0.2399 0.2868 REMARK 3 6 4.2800 - 4.0300 0.89 1177 120 0.2645 0.2950 REMARK 3 7 4.0300 - 3.8300 0.67 864 88 0.2637 0.3142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.425 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.872 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 5090 REMARK 3 ANGLE : 1.335 6990 REMARK 3 CHIRALITY : 0.055 849 REMARK 3 PLANARITY : 0.006 887 REMARK 3 DIHEDRAL : 7.226 699 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300016863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9363 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.830 REMARK 200 RESOLUTION RANGE LOW (A) : 29.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2ACF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.5% PRECIPITANT MIX (STOCK: 2.5% REMARK 280 MPD, 25% PEG1000, 25% PEG3350), 0.1M PH 8.5 BUFFER MIX (1M TRIS, REMARK 280 1M BICINE) AND 0.1M CARBOXYLIC ACIDS MIX (0.2M SODIUM FORMATE, REMARK 280 0.2M AMMONIUM ACETATE, 0.2M SODIUM CITRATE, 0.2M SODIUM REMARK 280 POTASSIUM, 0.2M SODIUM OXAMATE), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.78350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.89175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.67525 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 HIS A 1 REMARK 465 MET A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 172 REMARK 465 SER A 173 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 HIS B 1 REMARK 465 MET B 2 REMARK 465 VAL B 3 REMARK 465 ASN B 4 REMARK 465 MET B 171 REMARK 465 LYS B 172 REMARK 465 SER B 173 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 HIS C 1 REMARK 465 MET C 2 REMARK 465 VAL C 3 REMARK 465 LEU C 169 REMARK 465 GLU C 170 REMARK 465 MET C 171 REMARK 465 LYS C 172 REMARK 465 SER C 173 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 HIS D 1 REMARK 465 MET D 2 REMARK 465 VAL D 3 REMARK 465 LEU D 169 REMARK 465 GLU D 170 REMARK 465 MET D 171 REMARK 465 LYS D 172 REMARK 465 SER D 173 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CE NZ REMARK 470 LYS A 28 CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 55 CD CE NZ REMARK 470 LYS A 76 CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 ARG A 141 CD NE CZ NH1 NH2 REMARK 470 ARG A 148 CD NE CZ NH1 NH2 REMARK 470 LYS A 163 CD CE NZ REMARK 470 LYS B 11 CE NZ REMARK 470 LYS B 28 CE NZ REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 LYS B 55 CD CE NZ REMARK 470 LYS B 76 CD CE NZ REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 GLN B 107 CG CD OE1 NE2 REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 ARG B 141 CD NE CZ NH1 NH2 REMARK 470 ARG B 148 CD NE CZ NH1 NH2 REMARK 470 LYS B 163 CD CE NZ REMARK 470 LYS C 11 CE NZ REMARK 470 LYS C 28 CE NZ REMARK 470 LYS C 29 CG CD CE NZ REMARK 470 LYS C 31 CG CD CE NZ REMARK 470 LYS C 55 CD CE NZ REMARK 470 LYS C 76 CD CE NZ REMARK 470 LYS C 102 CG CD CE NZ REMARK 470 GLN C 107 CG CD OE1 NE2 REMARK 470 LYS C 110 CG CD CE NZ REMARK 470 ARG C 141 CD NE CZ NH1 NH2 REMARK 470 ARG C 148 CD NE CZ NH1 NH2 REMARK 470 LYS C 163 CD CE NZ REMARK 470 LYS D 11 CE NZ REMARK 470 LYS D 28 CE NZ REMARK 470 LYS D 29 CG CD CE NZ REMARK 470 LYS D 31 CG CD CE NZ REMARK 470 LYS D 55 CD CE NZ REMARK 470 LYS D 76 CD CE NZ REMARK 470 LYS D 102 CG CD CE NZ REMARK 470 GLN D 107 CG CD OE1 NE2 REMARK 470 LYS D 110 CG CD CE NZ REMARK 470 ARG D 141 CD NE CZ NH1 NH2 REMARK 470 ARG D 148 CD NE CZ NH1 NH2 REMARK 470 LYS D 163 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 43 29.69 49.66 REMARK 500 HIS A 86 -130.31 55.25 REMARK 500 LEU B 43 29.63 49.70 REMARK 500 HIS B 86 -130.30 55.31 REMARK 500 LEU C 43 29.68 49.70 REMARK 500 HIS C 86 -130.21 55.23 REMARK 500 LEU D 43 29.69 49.70 REMARK 500 HIS D 86 -130.25 55.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR D 201 DBREF 7C33 A 3 173 UNP P0DTC1 R1A_SARS2 1025 1195 DBREF 7C33 B 3 173 UNP P0DTC1 R1A_SARS2 1025 1195 DBREF 7C33 C 3 173 UNP P0DTC1 R1A_SARS2 1025 1195 DBREF 7C33 D 3 173 UNP P0DTC1 R1A_SARS2 1025 1195 SEQADV 7C33 GLY A -1 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 SER A 0 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 HIS A 1 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 MET A 2 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 GLY B -1 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 SER B 0 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 HIS B 1 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 MET B 2 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 GLY C -1 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 SER C 0 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 HIS C 1 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 MET C 2 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 GLY D -1 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 SER D 0 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 HIS D 1 UNP P0DTC1 EXPRESSION TAG SEQADV 7C33 MET D 2 UNP P0DTC1 EXPRESSION TAG SEQRES 1 A 175 GLY SER HIS MET VAL ASN SER PHE SER GLY TYR LEU LYS SEQRES 2 A 175 LEU THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL SEQRES 3 A 175 GLU GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN SEQRES 4 A 175 ALA ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA SEQRES 5 A 175 GLY ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL SEQRES 6 A 175 GLU SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS SEQRES 7 A 175 VAL GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA SEQRES 8 A 175 LYS HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS SEQRES 9 A 175 GLY GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN SEQRES 10 A 175 PHE ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER SEQRES 11 A 175 ALA GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG SEQRES 12 A 175 VAL CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA SEQRES 13 A 175 VAL PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER SEQRES 14 A 175 PHE LEU GLU MET LYS SER SEQRES 1 B 175 GLY SER HIS MET VAL ASN SER PHE SER GLY TYR LEU LYS SEQRES 2 B 175 LEU THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL SEQRES 3 B 175 GLU GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN SEQRES 4 B 175 ALA ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA SEQRES 5 B 175 GLY ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL SEQRES 6 B 175 GLU SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS SEQRES 7 B 175 VAL GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA SEQRES 8 B 175 LYS HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS SEQRES 9 B 175 GLY GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN SEQRES 10 B 175 PHE ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER SEQRES 11 B 175 ALA GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG SEQRES 12 B 175 VAL CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA SEQRES 13 B 175 VAL PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER SEQRES 14 B 175 PHE LEU GLU MET LYS SER SEQRES 1 C 175 GLY SER HIS MET VAL ASN SER PHE SER GLY TYR LEU LYS SEQRES 2 C 175 LEU THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL SEQRES 3 C 175 GLU GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN SEQRES 4 C 175 ALA ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA SEQRES 5 C 175 GLY ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL SEQRES 6 C 175 GLU SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS SEQRES 7 C 175 VAL GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA SEQRES 8 C 175 LYS HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS SEQRES 9 C 175 GLY GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN SEQRES 10 C 175 PHE ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER SEQRES 11 C 175 ALA GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG SEQRES 12 C 175 VAL CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA SEQRES 13 C 175 VAL PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER SEQRES 14 C 175 PHE LEU GLU MET LYS SER SEQRES 1 D 175 GLY SER HIS MET VAL ASN SER PHE SER GLY TYR LEU LYS SEQRES 2 D 175 LEU THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL SEQRES 3 D 175 GLU GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN SEQRES 4 D 175 ALA ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA SEQRES 5 D 175 GLY ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL SEQRES 6 D 175 GLU SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS SEQRES 7 D 175 VAL GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA SEQRES 8 D 175 LYS HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS SEQRES 9 D 175 GLY GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN SEQRES 10 D 175 PHE ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER SEQRES 11 D 175 ALA GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG SEQRES 12 D 175 VAL CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA SEQRES 13 D 175 VAL PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER SEQRES 14 D 175 PHE LEU GLU MET LYS SER HET APR A 201 36 HET APR B 201 36 HET APR C 201 36 HET APR D 201 36 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 5 APR 4(C15 H23 N5 O14 P2) HELIX 1 AA1 ASP A 22 LYS A 31 1 10 HELIX 2 AA2 GLY A 48 THR A 57 1 10 HELIX 3 AA3 ASN A 59 GLY A 73 1 15 HELIX 4 AA4 ASN A 99 GLY A 103 5 5 HELIX 5 AA5 GLN A 107 ASN A 115 1 9 HELIX 6 AA6 PHE A 116 HIS A 119 5 4 HELIX 7 AA7 ASP A 135 VAL A 147 1 13 HELIX 8 AA8 ASP A 157 LEU A 169 1 13 HELIX 9 AA9 ASP B 22 LYS B 31 1 10 HELIX 10 AB1 GLY B 48 THR B 57 1 10 HELIX 11 AB2 ASN B 59 GLY B 73 1 15 HELIX 12 AB3 ASN B 99 GLY B 103 5 5 HELIX 13 AB4 GLN B 107 ASN B 115 1 9 HELIX 14 AB5 PHE B 116 HIS B 119 5 4 HELIX 15 AB6 ASP B 135 VAL B 147 1 13 HELIX 16 AB7 ASP B 157 LEU B 169 1 13 HELIX 17 AB8 ASP C 22 LYS C 31 1 10 HELIX 18 AB9 GLY C 48 THR C 57 1 10 HELIX 19 AC1 ASN C 59 GLY C 73 1 15 HELIX 20 AC2 ASN C 99 GLY C 103 5 5 HELIX 21 AC3 GLN C 107 ASN C 115 1 9 HELIX 22 AC4 PHE C 116 HIS C 119 5 4 HELIX 23 AC5 ASP C 135 VAL C 147 1 13 HELIX 24 AC6 ASP C 157 PHE C 168 1 12 HELIX 25 AC7 ASP D 22 LYS D 31 1 10 HELIX 26 AC8 GLY D 48 THR D 57 1 10 HELIX 27 AC9 ASN D 59 GLY D 73 1 15 HELIX 28 AD1 ASN D 99 GLY D 103 5 5 HELIX 29 AD2 GLN D 107 ASN D 115 1 9 HELIX 30 AD3 PHE D 116 HIS D 119 5 4 HELIX 31 AD4 ASP D 135 VAL D 147 1 13 HELIX 32 AD5 ASP D 157 PHE D 168 1 12 SHEET 1 AA1 4 LEU A 10 LYS A 11 0 SHEET 2 AA1 4 VAL A 16 ASN A 20 -1 O ILE A 18 N LEU A 10 SHEET 3 AA1 4 ASN A 150 VAL A 155 1 O LEU A 153 N TYR A 17 SHEET 4 AA1 4 VAL A 121 ALA A 124 1 N LEU A 122 O TYR A 152 SHEET 1 AA2 3 VAL A 34 ALA A 39 0 SHEET 2 AA2 3 HIS A 91 VAL A 96 1 O VAL A 95 N ALA A 39 SHEET 3 AA2 3 SER A 80 SER A 84 -1 N CYS A 81 O HIS A 94 SHEET 1 AA3 4 LEU B 10 LYS B 11 0 SHEET 2 AA3 4 VAL B 16 ASN B 20 -1 O ILE B 18 N LEU B 10 SHEET 3 AA3 4 ASN B 150 VAL B 155 1 O LEU B 153 N TYR B 17 SHEET 4 AA3 4 VAL B 121 ALA B 124 1 N LEU B 122 O TYR B 152 SHEET 1 AA4 3 VAL B 34 ALA B 39 0 SHEET 2 AA4 3 HIS B 91 VAL B 96 1 O VAL B 95 N ALA B 39 SHEET 3 AA4 3 SER B 80 SER B 84 -1 N CYS B 81 O HIS B 94 SHEET 1 AA5 4 LEU C 10 LYS C 11 0 SHEET 2 AA5 4 VAL C 16 ASN C 20 -1 O ILE C 18 N LEU C 10 SHEET 3 AA5 4 ASN C 150 VAL C 155 1 O LEU C 153 N TYR C 17 SHEET 4 AA5 4 VAL C 121 ALA C 124 1 N LEU C 122 O TYR C 152 SHEET 1 AA6 3 VAL C 34 ALA C 39 0 SHEET 2 AA6 3 HIS C 91 VAL C 96 1 O VAL C 95 N ALA C 39 SHEET 3 AA6 3 SER C 80 SER C 84 -1 N CYS C 81 O HIS C 94 SHEET 1 AA7 4 LEU D 10 LYS D 11 0 SHEET 2 AA7 4 VAL D 16 ASN D 20 -1 O ILE D 18 N LEU D 10 SHEET 3 AA7 4 ASN D 150 VAL D 155 1 O LEU D 153 N TYR D 17 SHEET 4 AA7 4 VAL D 121 ALA D 124 1 N LEU D 122 O TYR D 152 SHEET 1 AA8 3 VAL D 34 ALA D 39 0 SHEET 2 AA8 3 HIS D 91 VAL D 96 1 O VAL D 95 N ALA D 39 SHEET 3 AA8 3 SER D 80 SER D 84 -1 N CYS D 81 O HIS D 94 SITE 1 AC1 19 ASP A 22 ILE A 23 ALA A 38 ASN A 40 SITE 2 AC1 19 LYS A 44 HIS A 45 GLY A 46 GLY A 47 SITE 3 AC1 19 GLY A 48 VAL A 49 ALA A 50 LEU A 126 SITE 4 AC1 19 SER A 128 ALA A 129 GLY A 130 ILE A 131 SITE 5 AC1 19 PHE A 132 ALA A 154 PHE A 156 SITE 1 AC2 18 ASP B 22 ILE B 23 ALA B 38 ASN B 40 SITE 2 AC2 18 LYS B 44 GLY B 46 GLY B 47 GLY B 48 SITE 3 AC2 18 VAL B 49 ALA B 50 LEU B 126 SER B 128 SITE 4 AC2 18 ALA B 129 GLY B 130 ILE B 131 PHE B 132 SITE 5 AC2 18 ALA B 154 PHE B 156 SITE 1 AC3 19 ASP C 22 ILE C 23 ALA C 38 ASN C 40 SITE 2 AC3 19 LYS C 44 HIS C 45 GLY C 46 GLY C 47 SITE 3 AC3 19 GLY C 48 VAL C 49 ALA C 50 LEU C 126 SITE 4 AC3 19 SER C 128 ALA C 129 GLY C 130 ILE C 131 SITE 5 AC3 19 PHE C 132 ALA C 154 PHE C 156 SITE 1 AC4 18 ASP D 22 ILE D 23 ALA D 38 ASN D 40 SITE 2 AC4 18 LYS D 44 GLY D 46 GLY D 47 GLY D 48 SITE 3 AC4 18 VAL D 49 ALA D 50 LEU D 126 SER D 128 SITE 4 AC4 18 ALA D 129 GLY D 130 ILE D 131 PHE D 132 SITE 5 AC4 18 ALA D 154 PHE D 156 CRYST1 85.993 85.993 143.567 90.00 90.00 90.00 P 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011629 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006965 0.00000