HEADER ONCOPROTEIN/HYDROLASE 14-MAY-20 7C41 TITLE KRAS G12V AND H-REV107 PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, J, M, G; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HRAS-LIKE SUPPRESSOR 3; COMPND 9 CHAIN: D; COMPND 10 SYNONYM: PHOSPHOLIPASE A AND ACYLTRANSFERASE 3,ADIPOSE-SPECIFIC COMPND 11 PHOSPHOLIPASE A2,ADPLA,GROUP XVI PHOSPHOLIPASE A1/A2,H-REV 107 COMPND 12 PROTEIN HOMOLOG,HREV107-1,HRAS-LIKE SUPPRESSOR 1,HRSL3,HREV107-3, COMPND 13 RENAL CARCINOMA ANTIGEN NY-REN-65; COMPND 14 EC: 3.1.1.32,3.1.1.4; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS KRAS G12V, H-REV107, INHIBITOR, STRUCTURAL PROTEIN, ONCOPROTEIN- KEYWDS 2 HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.W.HAN,M.S.JEONG,S.B.JANG REVDAT 2 29-NOV-23 7C41 1 REMARK REVDAT 1 19-MAY-21 7C41 0 JRNL AUTH C.W.HAN,M.S.JEONG,S.C.HA,S.B.JANG JRNL TITL A H-REV107 PEPTIDE INHIBITS TUMOR GROWTH AND INTERACTS JRNL TITL 2 DIRECTLY WITH ONCOGENIC KRAS MUTANTS. JRNL REF CANCERS (BASEL) V. 12 2020 JRNL REFN ESSN 2072-6694 JRNL PMID 32486141 JRNL DOI 10.3390/CANCERS12061412 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 2143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5220 - 5.6056 0.99 2866 180 0.3203 0.2812 REMARK 3 2 5.6056 - 4.4518 1.00 2946 96 0.2892 0.2639 REMARK 3 3 4.4518 - 3.8898 1.00 2948 126 0.2753 0.2965 REMARK 3 4 3.8898 - 3.5345 1.00 2887 152 0.2823 0.2829 REMARK 3 5 3.5345 - 3.2813 1.00 2956 88 0.2780 0.3893 REMARK 3 6 3.2813 - 3.0880 1.00 2938 181 0.2556 0.2380 REMARK 3 7 3.0880 - 2.9334 1.00 2884 154 0.2373 0.2812 REMARK 3 8 2.9334 - 2.8057 1.00 2834 150 0.2299 0.2694 REMARK 3 9 2.8057 - 2.6978 1.00 2952 150 0.2365 0.3447 REMARK 3 10 2.6978 - 2.6047 1.00 2865 177 0.2173 0.2764 REMARK 3 11 2.6047 - 2.5233 1.00 3012 92 0.1959 0.2567 REMARK 3 12 2.5233 - 2.4512 1.00 2850 206 0.1915 0.2488 REMARK 3 13 2.4512 - 2.3867 1.00 2985 104 0.2091 0.3075 REMARK 3 14 2.3867 - 2.3284 1.00 2797 171 0.2162 0.2878 REMARK 3 15 2.3284 - 2.2760 0.99 2996 116 0.2245 0.2884 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5632 REMARK 3 ANGLE : 1.160 7627 REMARK 3 CHIRALITY : 0.058 859 REMARK 3 PLANARITY : 0.005 969 REMARK 3 DIHEDRAL : 6.619 3397 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300016961. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45859 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5UQW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENE GLYCOL 3350, 0.2 M REMARK 280 POTASSIUM NITRATE AT PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS J 169 REMARK 465 HIS J 170 REMARK 465 HIS J 171 REMARK 465 HIS J 172 REMARK 465 HIS J 173 REMARK 465 HIS J 174 REMARK 465 HIS M 169 REMARK 465 HIS M 170 REMARK 465 HIS M 171 REMARK 465 HIS M 172 REMARK 465 HIS M 173 REMARK 465 HIS M 174 REMARK 465 HIS G 169 REMARK 465 HIS G 170 REMARK 465 HIS G 171 REMARK 465 HIS G 172 REMARK 465 HIS G 173 REMARK 465 HIS G 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CD OE1 OE2 REMARK 470 ARG A 97 NE CZ NH1 NH2 REMARK 470 GLU J 62 CD OE1 OE2 REMARK 470 ARG J 97 NE CZ NH1 NH2 REMARK 470 GLU M 62 CD OE1 OE2 REMARK 470 ARG M 97 NE CZ NH1 NH2 REMARK 470 GLU G 62 CD OE1 OE2 REMARK 470 ARG G 97 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR G 50 O HOH G 301 2.01 REMARK 500 OD1 ASP J 54 OH TYR J 71 2.06 REMARK 500 O GLU M 91 O HOH M 301 2.08 REMARK 500 O ALA G 66 NE2 GLN G 70 2.13 REMARK 500 O2A GDP A 201 O HOH A 301 2.14 REMARK 500 O TYR J 71 O HOH J 301 2.15 REMARK 500 O HOH J 314 O HOH J 316 2.16 REMARK 500 O HOH A 302 O HOH A 312 2.16 REMARK 500 O GLY M 10 O HOH M 302 2.18 REMARK 500 O GLN A 129 O HOH A 302 2.18 REMARK 500 O HOH M 302 O HOH M 306 2.18 REMARK 500 OD2 ASP J 153 O HOH J 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 34 -34.04 -39.79 REMARK 500 LYS A 42 139.21 -173.55 REMARK 500 LYS A 117 33.59 72.30 REMARK 500 ASP D 67 -15.71 -47.95 REMARK 500 ASP D 72 -98.75 -75.37 REMARK 500 LYS D 73 174.13 167.04 REMARK 500 SER J 122 81.56 -57.74 REMARK 500 ARG J 149 -0.90 75.73 REMARK 500 ASP M 33 109.93 -32.89 REMARK 500 ASP M 108 61.54 -116.94 REMARK 500 LYS G 117 30.02 75.12 REMARK 500 ARG G 149 -5.95 74.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP D 72 LYS D 73 -147.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 ASP A 57 OD2 82.8 REMARK 620 3 GDP A 201 O3B 88.4 122.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG J 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP J 201 O1B REMARK 620 2 GDP J 201 O2B 59.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG M 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER M 17 OG REMARK 620 2 GDP M 201 O2B 140.4 REMARK 620 3 GDP M 201 O3B 82.4 58.0 REMARK 620 4 HOH M 321 O 109.1 78.2 94.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG G 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER G 17 OG REMARK 620 2 ASP G 33 O 142.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP J 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG J 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP M 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG M 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP G 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG G 202 DBREF 7C41 A 1 168 UNP P01116 RASK_HUMAN 1 168 DBREF 7C41 D 65 74 UNP P53816 PLAT3_HUMAN 65 74 DBREF 7C41 J 1 168 UNP P01116 RASK_HUMAN 1 168 DBREF 7C41 M 1 168 UNP P01116 RASK_HUMAN 1 168 DBREF 7C41 G 1 168 UNP P01116 RASK_HUMAN 1 168 SEQADV 7C41 VAL A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 7C41 HIS A 169 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS A 170 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS A 171 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS A 172 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS A 173 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS A 174 UNP P01116 EXPRESSION TAG SEQADV 7C41 VAL J 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 7C41 HIS J 169 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS J 170 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS J 171 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS J 172 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS J 173 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS J 174 UNP P01116 EXPRESSION TAG SEQADV 7C41 VAL M 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 7C41 HIS M 169 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS M 170 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS M 171 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS M 172 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS M 173 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS M 174 UNP P01116 EXPRESSION TAG SEQADV 7C41 VAL G 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 7C41 HIS G 169 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS G 170 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS G 171 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS G 172 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS G 173 UNP P01116 EXPRESSION TAG SEQADV 7C41 HIS G 174 UNP P01116 EXPRESSION TAG SEQRES 1 A 174 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL GLY SEQRES 2 A 174 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 174 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 174 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 174 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 174 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 174 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 174 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 174 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 174 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 A 174 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 A 174 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 A 174 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU HIS SEQRES 14 A 174 HIS HIS HIS HIS HIS SEQRES 1 D 10 LEU TYR ASP VAL ALA GLY SER ASP LYS TYR SEQRES 1 J 174 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL GLY SEQRES 2 J 174 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 J 174 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 J 174 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 J 174 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 J 174 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 J 174 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 J 174 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 J 174 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 J 174 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 J 174 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 J 174 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 J 174 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU HIS SEQRES 14 J 174 HIS HIS HIS HIS HIS SEQRES 1 M 174 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL GLY SEQRES 2 M 174 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 M 174 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 M 174 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 M 174 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 M 174 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 M 174 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 M 174 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 M 174 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 M 174 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 M 174 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 M 174 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 M 174 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU HIS SEQRES 14 M 174 HIS HIS HIS HIS HIS SEQRES 1 G 174 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL GLY SEQRES 2 G 174 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 G 174 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 G 174 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 G 174 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 G 174 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 G 174 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 G 174 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 G 174 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 G 174 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 G 174 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 G 174 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 G 174 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU HIS SEQRES 14 G 174 HIS HIS HIS HIS HIS HET GDP A 201 28 HET MG A 202 1 HET GDP J 201 28 HET MG J 202 1 HET GDP M 201 28 HET MG M 202 1 HET GDP G 201 28 HET MG G 202 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 6 GDP 4(C10 H15 N5 O11 P2) FORMUL 7 MG 4(MG 2+) FORMUL 14 HOH *83(H2 O) HELIX 1 AA1 GLY A 15 GLN A 25 1 11 HELIX 2 AA2 SER A 65 GLY A 75 1 11 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LYS A 167 1 17 HELIX 7 AA7 TYR D 66 GLY D 70 1 5 HELIX 8 AA8 GLY J 15 ASN J 26 1 12 HELIX 9 AA9 MET J 67 GLY J 75 1 9 HELIX 10 AB1 ASN J 86 ASP J 92 1 7 HELIX 11 AB2 ASP J 92 ASP J 105 1 14 HELIX 12 AB3 ASP J 126 GLY J 138 1 13 HELIX 13 AB4 GLY J 151 GLU J 168 1 18 HELIX 14 AB5 GLY M 15 ASN M 26 1 12 HELIX 15 AB6 SER M 65 GLY M 75 1 11 HELIX 16 AB7 ASN M 86 ASP M 105 1 20 HELIX 17 AB8 ASP M 126 GLY M 138 1 13 HELIX 18 AB9 GLY M 151 LYS M 167 1 17 HELIX 19 AC1 GLY G 15 ASN G 26 1 12 HELIX 20 AC2 SER G 65 GLY G 75 1 11 HELIX 21 AC3 ASN G 86 ASP G 92 1 7 HELIX 22 AC4 ASP G 92 ASP G 105 1 14 HELIX 23 AC5 ASP G 126 GLY G 138 1 13 HELIX 24 AC6 GLY G 151 LYS G 167 1 17 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 AA1 6 GLU A 3 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP J 38 ILE J 46 0 SHEET 2 AA2 6 GLU J 49 ASP J 57 -1 O ILE J 55 N TYR J 40 SHEET 3 AA2 6 THR J 2 GLY J 10 1 N LEU J 6 O LEU J 56 SHEET 4 AA2 6 GLY J 77 ALA J 83 1 O LEU J 79 N VAL J 9 SHEET 5 AA2 6 MET J 111 ASN J 116 1 O VAL J 112 N CYS J 80 SHEET 6 AA2 6 PHE J 141 GLU J 143 1 O ILE J 142 N GLY J 115 SHEET 1 AA3 6 ASP M 38 ILE M 46 0 SHEET 2 AA3 6 GLU M 49 ASP M 57 -1 O ILE M 55 N TYR M 40 SHEET 3 AA3 6 THR M 2 GLY M 10 1 N VAL M 8 O LEU M 56 SHEET 4 AA3 6 GLY M 77 ALA M 83 1 O LEU M 79 N VAL M 9 SHEET 5 AA3 6 MET M 111 ASN M 116 1 O ASN M 116 N PHE M 82 SHEET 6 AA3 6 PHE M 141 GLU M 143 1 O ILE M 142 N LEU M 113 SHEET 1 AA4 6 ASP G 38 VAL G 45 0 SHEET 2 AA4 6 THR G 50 ASP G 57 -1 O ILE G 55 N TYR G 40 SHEET 3 AA4 6 GLU G 3 GLY G 10 1 N TYR G 4 O LEU G 52 SHEET 4 AA4 6 GLY G 77 ALA G 83 1 O LEU G 79 N VAL G 9 SHEET 5 AA4 6 MET G 111 ASN G 116 1 O ASN G 116 N PHE G 82 SHEET 6 AA4 6 PHE G 141 GLU G 143 1 O ILE G 142 N GLY G 115 LINK OG SER A 17 MG MG A 202 1555 1555 2.71 LINK OD2 ASP A 57 MG MG A 202 1555 1555 2.45 LINK O3B GDP A 201 MG MG A 202 1555 1555 2.99 LINK O1B GDP J 201 MG MG J 202 1555 1555 2.83 LINK O2B GDP J 201 MG MG J 202 1555 1555 1.99 LINK OG SER M 17 MG MG M 202 1555 1555 2.40 LINK O2B GDP M 201 MG MG M 202 1555 1555 2.90 LINK O3B GDP M 201 MG MG M 202 1555 1555 2.08 LINK MG MG M 202 O HOH M 321 1555 1555 2.23 LINK OG SER G 17 MG MG G 202 1555 1555 2.87 LINK O ASP G 33 MG MG G 202 1555 1555 2.26 SITE 1 AC1 22 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 22 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC1 22 ASP A 30 ASN A 116 LYS A 117 ASP A 119 SITE 4 AC1 22 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 5 AC1 22 MG A 202 HOH A 301 HOH A 307 TYR D 66 SITE 6 AC1 22 GLY D 70 SER D 71 SITE 1 AC2 6 LYS A 16 SER A 17 ASP A 57 THR A 58 SITE 2 AC2 6 GDP A 201 TYR D 66 SITE 1 AC3 18 GLY J 13 VAL J 14 GLY J 15 LYS J 16 SITE 2 AC3 18 SER J 17 ALA J 18 PHE J 28 ASP J 30 SITE 3 AC3 18 TYR J 32 ASN J 116 LYS J 117 ASP J 119 SITE 4 AC3 18 LEU J 120 SER J 145 ALA J 146 LYS J 147 SITE 5 AC3 18 MG J 202 HOH J 305 SITE 1 AC4 2 PRO J 34 GDP J 201 SITE 1 AC5 18 ALA M 11 GLY M 13 VAL M 14 GLY M 15 SITE 2 AC5 18 LYS M 16 SER M 17 ALA M 18 PHE M 28 SITE 3 AC5 18 ASP M 30 TYR M 32 ASN M 116 LYS M 117 SITE 4 AC5 18 ASP M 119 SER M 145 ALA M 146 LYS M 147 SITE 5 AC5 18 MG M 202 HOH M 307 SITE 1 AC6 4 SER M 17 PRO M 34 GDP M 201 HOH M 321 SITE 1 AC7 20 VAL G 12 GLY G 13 VAL G 14 GLY G 15 SITE 2 AC7 20 LYS G 16 SER G 17 ALA G 18 PHE G 28 SITE 3 AC7 20 VAL G 29 ASP G 30 TYR G 32 ASN G 116 SITE 4 AC7 20 LYS G 117 ASP G 119 LEU G 120 SER G 145 SITE 5 AC7 20 ALA G 146 HOH G 305 HOH G 307 HOH G 309 SITE 1 AC8 5 SER G 17 TYR G 32 ASP G 33 PRO G 34 SITE 2 AC8 5 ILE G 36 CRYST1 41.907 84.339 84.335 59.98 89.96 89.97 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023862 -0.000015 -0.000010 0.00000 SCALE2 0.000000 0.011857 -0.006850 0.00000 SCALE3 0.000000 0.000000 0.013694 0.00000