HEADER VIRAL PROTEIN 19-MAY-20 7C53 TITLE CRYSTAL STRUCTURE OF SARS-COV-2 HR1 MOTIF IN COMPLEX WITH PAN-COVS TITLE 2 INHIBITOR EK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S2',PAN-COVS INHIBITOR EK1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: HR1 MOTIF; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE FUSION PROTEIN OF SARS-COV-2 HR1 MOTIF (UNP COMPND 7 RESIDUES 910-975) AND PAN-COVS INHIBITOR EK1 (RESIDUES 976-1036) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2, SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049, 32630; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV-2 HR1, PAN-COVS INHIBITOR, EK1 PEPTIDE, VIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHU,X.YANG,F.SUN REVDAT 3 29-NOV-23 7C53 1 REMARK REVDAT 2 01-DEC-21 7C53 1 JRNL REVDAT 1 19-MAY-21 7C53 0 JRNL AUTH S.XIA,Q.LAN,Y.ZHU,C.WANG,W.XU,Y.LI,L.WANG,F.JIAO,J.ZHOU, JRNL AUTH 2 C.HUA,Q.WANG,X.CAI,Y.WU,J.GAO,H.LIU,G.SUN,J.MUNCH, JRNL AUTH 3 F.KIRCHHOFF,Z.YUAN,Y.XIE,F.SUN,S.JIANG,L.LU JRNL TITL STRUCTURAL AND FUNCTIONAL BASIS FOR PAN-COV FUSION JRNL TITL 2 INHIBITORS AGAINST SARS-COV-2 AND ITS VARIANTS WITH JRNL TITL 3 PRECLINICAL EVALUATION. JRNL REF SIGNAL TRANSDUCT TARGET THER V. 6 288 2021 JRNL REFN ESSN 2059-3635 JRNL PMID 34326308 JRNL DOI 10.1038/S41392-021-00712-2 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0570 - 5.0637 1.00 2783 154 0.2029 0.2152 REMARK 3 2 5.0637 - 4.0198 1.00 2678 148 0.1571 0.1830 REMARK 3 3 4.0198 - 3.5119 1.00 2700 112 0.1735 0.2309 REMARK 3 4 3.5119 - 3.1909 1.00 2685 112 0.1854 0.2577 REMARK 3 5 3.1909 - 2.9622 1.00 2644 141 0.2042 0.2702 REMARK 3 6 2.9622 - 2.7876 1.00 2630 136 0.2049 0.2712 REMARK 3 7 2.7876 - 2.6480 1.00 2606 151 0.1983 0.2706 REMARK 3 8 2.6480 - 2.5327 1.00 2614 131 0.2160 0.3025 REMARK 3 9 2.5327 - 2.4352 1.00 2619 149 0.2414 0.2788 REMARK 3 10 2.4352 - 2.3512 1.00 2636 121 0.2386 0.3116 REMARK 3 11 2.3512 - 2.2780 0.99 2604 137 0.2894 0.3570 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 912 THROUGH 1036) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0949 -27.9111 -20.9213 REMARK 3 T TENSOR REMARK 3 T11: 0.2711 T22: 0.2533 REMARK 3 T33: 0.2296 T12: 0.0267 REMARK 3 T13: 0.0475 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 2.2393 L22: 0.8386 REMARK 3 L33: 1.6763 L12: 0.4085 REMARK 3 L13: 1.0127 L23: 0.3088 REMARK 3 S TENSOR REMARK 3 S11: 0.1111 S12: 0.0025 S13: -0.1340 REMARK 3 S21: 0.0237 S22: -0.0420 S23: -0.1422 REMARK 3 S31: 0.2013 S32: -0.0211 S33: -0.0664 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 911 THROUGH 1035) REMARK 3 ORIGIN FOR THE GROUP (A): -40.9983 -23.6677 -13.0601 REMARK 3 T TENSOR REMARK 3 T11: 0.2918 T22: 0.2143 REMARK 3 T33: 0.2019 T12: -0.0048 REMARK 3 T13: 0.0397 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 2.3707 L22: 0.6200 REMARK 3 L33: 1.7758 L12: -0.0439 REMARK 3 L13: 1.1959 L23: 0.3894 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.2546 S13: 0.0386 REMARK 3 S21: 0.0945 S22: -0.0579 S23: -0.0675 REMARK 3 S31: 0.0969 S32: -0.1436 S33: 0.0574 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 911 THROUGH 1035) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5577 -17.4306 -20.6699 REMARK 3 T TENSOR REMARK 3 T11: 0.2383 T22: 0.2022 REMARK 3 T33: 0.3184 T12: 0.0156 REMARK 3 T13: 0.0213 T23: 0.0619 REMARK 3 L TENSOR REMARK 3 L11: 3.2659 L22: 0.9595 REMARK 3 L33: 1.3228 L12: 0.4718 REMARK 3 L13: 1.2703 L23: -0.0028 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 0.2352 S13: 0.4794 REMARK 3 S21: 0.0511 S22: -0.0809 S23: -0.1421 REMARK 3 S31: -0.0970 S32: 0.2014 S33: 0.1754 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 912 THROUGH 1033) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8850 -25.4198 -31.3416 REMARK 3 T TENSOR REMARK 3 T11: 0.2587 T22: 0.3257 REMARK 3 T33: 0.2584 T12: 0.0001 REMARK 3 T13: 0.0231 T23: -0.0695 REMARK 3 L TENSOR REMARK 3 L11: 0.9211 L22: 3.3535 REMARK 3 L33: 2.7129 L12: -0.4594 REMARK 3 L13: 0.6657 L23: -2.1168 REMARK 3 S TENSOR REMARK 3 S11: -0.1594 S12: -0.2340 S13: 0.1182 REMARK 3 S21: 0.6177 S22: 0.2337 S23: -0.0809 REMARK 3 S31: -0.4384 S32: -0.1374 S33: -0.0378 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 911 THROUGH 1035) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5322 -29.2640 -39.3747 REMARK 3 T TENSOR REMARK 3 T11: 0.2926 T22: 0.2627 REMARK 3 T33: 0.2489 T12: -0.0321 REMARK 3 T13: -0.0081 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.7807 L22: 1.9050 REMARK 3 L33: 1.2077 L12: -1.5214 REMARK 3 L13: 0.8193 L23: -0.8344 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: -0.0028 S13: 0.1210 REMARK 3 S21: -0.1570 S22: -0.0614 S23: -0.3491 REMARK 3 S31: 0.1925 S32: 0.0615 S33: 0.0635 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 912 THROUGH 1035) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8671 -30.9153 -38.7961 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.2451 REMARK 3 T33: 0.2153 T12: -0.0390 REMARK 3 T13: -0.0013 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.1596 L22: 2.5058 REMARK 3 L33: 1.3200 L12: -0.3276 REMARK 3 L13: 0.3074 L23: -1.0901 REMARK 3 S TENSOR REMARK 3 S11: 0.0615 S12: -0.0954 S13: -0.0827 REMARK 3 S21: -0.1359 S22: 0.1441 S23: 0.2521 REMARK 3 S31: 0.1528 S32: -0.1786 S33: -0.2247 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 912 THROUGH 917 OR REMARK 3 RESID 919 THROUGH 956 OR RESID 958 REMARK 3 THROUGH 963 OR RESID 965 THROUGH 969 OR REMARK 3 RESID 1005 THROUGH 1019 OR RESID 1021 REMARK 3 THROUGH 1023 OR RESID 1025 THROUGH 1027 REMARK 3 OR RESID 1029 THROUGH 1032)) REMARK 3 SELECTION : (CHAIN B AND (RESID 912 THROUGH 917 OR REMARK 3 RESID 919 THROUGH 956 OR RESID 958 REMARK 3 THROUGH 963 OR RESID 965 THROUGH 969 OR REMARK 3 RESID 1005 THROUGH 1019 OR RESID 1021 REMARK 3 THROUGH 1023 OR RESID 1025 THROUGH 1027 REMARK 3 OR RESID 1029 THROUGH 1032)) REMARK 3 ATOM PAIRS NUMBER : 648 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 912 THROUGH 917 OR REMARK 3 RESID 919 THROUGH 956 OR RESID 958 REMARK 3 THROUGH 963 OR RESID 965 THROUGH 969 OR REMARK 3 RESID 1005 THROUGH 1019 OR RESID 1021 REMARK 3 THROUGH 1023 OR RESID 1025 THROUGH 1027 REMARK 3 OR RESID 1029 THROUGH 1032)) REMARK 3 SELECTION : (CHAIN D AND (RESID 912 THROUGH 917 OR REMARK 3 RESID 919 THROUGH 956 OR RESID 958 REMARK 3 THROUGH 963 OR RESID 965 THROUGH 969 OR REMARK 3 RESID 1005 THROUGH 1019 OR RESID 1021 REMARK 3 THROUGH 1023 OR RESID 1025 THROUGH 1027 REMARK 3 OR RESID 1029 THROUGH 1032)) REMARK 3 ATOM PAIRS NUMBER : 648 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN C AND (RESID 913 THROUGH 917 OR REMARK 3 RESID 919 THROUGH 953 OR RESID 955 REMARK 3 THROUGH 963 OR RESID 965 THROUGH 968 OR REMARK 3 RESID 1004 THROUGH 1005 OR RESID 1007 REMARK 3 THROUGH 1016 OR RESID 1018 THROUGH 1023 REMARK 3 OR RESID 1025 THROUGH 1034)) REMARK 3 SELECTION : (CHAIN E AND (RESID 913 THROUGH 917 OR REMARK 3 RESID 919 THROUGH 953 OR RESID 955 REMARK 3 THROUGH 963 OR RESID 965 THROUGH 968 OR REMARK 3 RESID 1004 THROUGH 1005 OR RESID 1007 REMARK 3 THROUGH 1016 OR RESID 1018 THROUGH 1023 REMARK 3 OR RESID 1025 THROUGH 1034)) REMARK 3 ATOM PAIRS NUMBER : 657 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN C AND (RESID 913 THROUGH 917 OR REMARK 3 RESID 919 THROUGH 953 OR RESID 955 REMARK 3 THROUGH 963 OR RESID 965 THROUGH 968 OR REMARK 3 RESID 1004 THROUGH 1005 OR RESID 1007 REMARK 3 THROUGH 1016 OR RESID 1018 THROUGH 1023 REMARK 3 OR RESID 1025 THROUGH 1034)) REMARK 3 SELECTION : (CHAIN F AND (RESID 913 THROUGH 917 OR REMARK 3 RESID 919 THROUGH 953 OR RESID 955 REMARK 3 THROUGH 963 OR RESID 965 THROUGH 968 OR REMARK 3 RESID 1004 THROUGH 1005 OR RESID 1007 REMARK 3 THROUGH 1016 OR RESID 1018 THROUGH 1023 REMARK 3 OR RESID 1025 THROUGH 1034)) REMARK 3 ATOM PAIRS NUMBER : 657 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300017052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30691 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.278 REMARK 200 RESOLUTION RANGE LOW (A) : 48.057 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZVM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 0.1 M NA ACETATE PH 5.0, 0.02 REMARK 280 M CALCIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.73050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.73050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 66.90750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.07050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 66.90750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.07050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.73050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 66.90750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.07050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.73050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 66.90750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.07050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1108 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 910 REMARK 465 VAL A 911 REMARK 465 PHE A 990 REMARK 465 GLY A 991 REMARK 465 ALA A 992 REMARK 465 ILE A 993 REMARK 465 SER A 994 REMARK 465 SER A 995 REMARK 465 GLY A 996 REMARK 465 GLY A 997 REMARK 465 ARG A 998 REMARK 465 GLY A 999 REMARK 465 GLY A 1000 REMARK 465 SER A 1001 REMARK 465 GLY B 910 REMARK 465 PHE B 990 REMARK 465 GLY B 991 REMARK 465 ALA B 992 REMARK 465 ILE B 993 REMARK 465 SER B 994 REMARK 465 SER B 995 REMARK 465 GLY B 996 REMARK 465 GLY B 997 REMARK 465 ARG B 998 REMARK 465 GLY B 999 REMARK 465 GLY B 1000 REMARK 465 SER B 1001 REMARK 465 LEU B 1036 REMARK 465 GLY C 910 REMARK 465 PHE C 990 REMARK 465 GLY C 991 REMARK 465 ALA C 992 REMARK 465 ILE C 993 REMARK 465 SER C 994 REMARK 465 SER C 995 REMARK 465 GLY C 996 REMARK 465 GLY C 997 REMARK 465 ARG C 998 REMARK 465 GLY C 999 REMARK 465 GLY C 1000 REMARK 465 SER C 1001 REMARK 465 LEU C 1002 REMARK 465 ASP C 1003 REMARK 465 LEU C 1036 REMARK 465 GLY D 910 REMARK 465 VAL D 911 REMARK 465 PHE D 990 REMARK 465 GLY D 991 REMARK 465 ALA D 992 REMARK 465 ILE D 993 REMARK 465 SER D 994 REMARK 465 SER D 995 REMARK 465 GLY D 996 REMARK 465 GLY D 997 REMARK 465 ARG D 998 REMARK 465 GLY D 999 REMARK 465 GLY D 1000 REMARK 465 SER D 1001 REMARK 465 LEU D 1002 REMARK 465 LYS D 1034 REMARK 465 GLU D 1035 REMARK 465 LEU D 1036 REMARK 465 GLY E 910 REMARK 465 GLY E 991 REMARK 465 ALA E 992 REMARK 465 ILE E 993 REMARK 465 SER E 994 REMARK 465 SER E 995 REMARK 465 GLY E 996 REMARK 465 GLY E 997 REMARK 465 ARG E 998 REMARK 465 GLY E 999 REMARK 465 GLY E 1000 REMARK 465 SER E 1001 REMARK 465 LEU E 1002 REMARK 465 LEU E 1036 REMARK 465 GLY F 910 REMARK 465 VAL F 911 REMARK 465 PHE F 990 REMARK 465 GLY F 991 REMARK 465 ALA F 992 REMARK 465 ILE F 993 REMARK 465 SER F 994 REMARK 465 SER F 995 REMARK 465 GLY F 996 REMARK 465 GLY F 997 REMARK 465 ARG F 998 REMARK 465 GLY F 999 REMARK 465 GLY F 1000 REMARK 465 SER F 1001 REMARK 465 LEU F 1036 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN F1004 16.85 -151.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1102 O REMARK 620 2 ASP D 950 OD1 137.7 REMARK 620 3 ASP D 950 OD2 142.1 43.6 REMARK 620 4 HOH D1206 O 95.7 59.4 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E1032 OD1 REMARK 620 2 LEU E1033 O 83.8 REMARK 620 3 GLU E1035 OE1 116.8 65.3 REMARK 620 4 GLU E1035 OE2 158.4 89.1 42.3 REMARK 620 5 HOH E1206 O 59.4 67.2 58.1 99.1 REMARK 620 6 HOH E1226 O 94.6 84.6 131.9 105.1 142.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 1101 DBREF 7C53 A 910 995 UNP P0DTC2 SPIKE_SARS2 910 975 DBREF 7C53 A 996 1036 PDB 7C53 7C53 996 1036 DBREF 7C53 B 910 995 UNP P0DTC2 SPIKE_SARS2 910 975 DBREF 7C53 B 996 1036 PDB 7C53 7C53 996 1036 DBREF 7C53 C 910 995 UNP P0DTC2 SPIKE_SARS2 910 975 DBREF 7C53 C 996 1036 PDB 7C53 7C53 996 1036 DBREF 7C53 D 910 995 UNP P0DTC2 SPIKE_SARS2 910 975 DBREF 7C53 D 996 1036 PDB 7C53 7C53 996 1036 DBREF 7C53 E 910 995 UNP P0DTC2 SPIKE_SARS2 910 975 DBREF 7C53 E 996 1036 PDB 7C53 7C53 996 1036 DBREF 7C53 F 910 995 UNP P0DTC2 SPIKE_SARS2 910 975 DBREF 7C53 F 996 1036 PDB 7C53 7C53 996 1036 SEQRES 1 A 107 GLY VAL THR GLN ASN VAL LEU TYR GLU ASN GLN LYS LEU SEQRES 2 A 107 ILE ALA ASN GLN PHE ASN SER ALA ILE GLY LYS ILE GLN SEQRES 3 A 107 ASP SER LEU SER SER THR ALA SER ALA LEU GLY LYS LEU SEQRES 4 A 107 GLN ASP VAL VAL ASN GLN ASN ALA GLN ALA LEU ASN THR SEQRES 5 A 107 LEU VAL LYS GLN LEU SER SER ASN PHE GLY ALA ILE SER SEQRES 6 A 107 SER GLY GLY ARG GLY GLY SER LEU ASP GLN ILE ASN VAL SEQRES 7 A 107 THR PHE LEU ASP LEU GLU TYR GLU MET LYS LYS LEU GLU SEQRES 8 A 107 GLU ALA ILE LYS LYS LEU GLU GLU SER TYR ILE ASP LEU SEQRES 9 A 107 LYS GLU LEU SEQRES 1 B 107 GLY VAL THR GLN ASN VAL LEU TYR GLU ASN GLN LYS LEU SEQRES 2 B 107 ILE ALA ASN GLN PHE ASN SER ALA ILE GLY LYS ILE GLN SEQRES 3 B 107 ASP SER LEU SER SER THR ALA SER ALA LEU GLY LYS LEU SEQRES 4 B 107 GLN ASP VAL VAL ASN GLN ASN ALA GLN ALA LEU ASN THR SEQRES 5 B 107 LEU VAL LYS GLN LEU SER SER ASN PHE GLY ALA ILE SER SEQRES 6 B 107 SER GLY GLY ARG GLY GLY SER LEU ASP GLN ILE ASN VAL SEQRES 7 B 107 THR PHE LEU ASP LEU GLU TYR GLU MET LYS LYS LEU GLU SEQRES 8 B 107 GLU ALA ILE LYS LYS LEU GLU GLU SER TYR ILE ASP LEU SEQRES 9 B 107 LYS GLU LEU SEQRES 1 C 107 GLY VAL THR GLN ASN VAL LEU TYR GLU ASN GLN LYS LEU SEQRES 2 C 107 ILE ALA ASN GLN PHE ASN SER ALA ILE GLY LYS ILE GLN SEQRES 3 C 107 ASP SER LEU SER SER THR ALA SER ALA LEU GLY LYS LEU SEQRES 4 C 107 GLN ASP VAL VAL ASN GLN ASN ALA GLN ALA LEU ASN THR SEQRES 5 C 107 LEU VAL LYS GLN LEU SER SER ASN PHE GLY ALA ILE SER SEQRES 6 C 107 SER GLY GLY ARG GLY GLY SER LEU ASP GLN ILE ASN VAL SEQRES 7 C 107 THR PHE LEU ASP LEU GLU TYR GLU MET LYS LYS LEU GLU SEQRES 8 C 107 GLU ALA ILE LYS LYS LEU GLU GLU SER TYR ILE ASP LEU SEQRES 9 C 107 LYS GLU LEU SEQRES 1 D 107 GLY VAL THR GLN ASN VAL LEU TYR GLU ASN GLN LYS LEU SEQRES 2 D 107 ILE ALA ASN GLN PHE ASN SER ALA ILE GLY LYS ILE GLN SEQRES 3 D 107 ASP SER LEU SER SER THR ALA SER ALA LEU GLY LYS LEU SEQRES 4 D 107 GLN ASP VAL VAL ASN GLN ASN ALA GLN ALA LEU ASN THR SEQRES 5 D 107 LEU VAL LYS GLN LEU SER SER ASN PHE GLY ALA ILE SER SEQRES 6 D 107 SER GLY GLY ARG GLY GLY SER LEU ASP GLN ILE ASN VAL SEQRES 7 D 107 THR PHE LEU ASP LEU GLU TYR GLU MET LYS LYS LEU GLU SEQRES 8 D 107 GLU ALA ILE LYS LYS LEU GLU GLU SER TYR ILE ASP LEU SEQRES 9 D 107 LYS GLU LEU SEQRES 1 E 107 GLY VAL THR GLN ASN VAL LEU TYR GLU ASN GLN LYS LEU SEQRES 2 E 107 ILE ALA ASN GLN PHE ASN SER ALA ILE GLY LYS ILE GLN SEQRES 3 E 107 ASP SER LEU SER SER THR ALA SER ALA LEU GLY LYS LEU SEQRES 4 E 107 GLN ASP VAL VAL ASN GLN ASN ALA GLN ALA LEU ASN THR SEQRES 5 E 107 LEU VAL LYS GLN LEU SER SER ASN PHE GLY ALA ILE SER SEQRES 6 E 107 SER GLY GLY ARG GLY GLY SER LEU ASP GLN ILE ASN VAL SEQRES 7 E 107 THR PHE LEU ASP LEU GLU TYR GLU MET LYS LYS LEU GLU SEQRES 8 E 107 GLU ALA ILE LYS LYS LEU GLU GLU SER TYR ILE ASP LEU SEQRES 9 E 107 LYS GLU LEU SEQRES 1 F 107 GLY VAL THR GLN ASN VAL LEU TYR GLU ASN GLN LYS LEU SEQRES 2 F 107 ILE ALA ASN GLN PHE ASN SER ALA ILE GLY LYS ILE GLN SEQRES 3 F 107 ASP SER LEU SER SER THR ALA SER ALA LEU GLY LYS LEU SEQRES 4 F 107 GLN ASP VAL VAL ASN GLN ASN ALA GLN ALA LEU ASN THR SEQRES 5 F 107 LEU VAL LYS GLN LEU SER SER ASN PHE GLY ALA ILE SER SEQRES 6 F 107 SER GLY GLY ARG GLY GLY SER LEU ASP GLN ILE ASN VAL SEQRES 7 F 107 THR PHE LEU ASP LEU GLU TYR GLU MET LYS LYS LEU GLU SEQRES 8 F 107 GLU ALA ILE LYS LYS LEU GLU GLU SER TYR ILE ASP LEU SEQRES 9 F 107 LYS GLU LEU HET CA D1101 1 HET CA E1101 1 HETNAM CA CALCIUM ION FORMUL 7 CA 2(CA 2+) FORMUL 9 HOH *156(H2 O) HELIX 1 AA1 THR A 912 SER A 968 1 57 HELIX 2 AA2 LEU A 1012 GLU A 1028 1 17 HELIX 3 AA3 ASP A 1032 LEU A 1036 5 5 HELIX 4 AA4 THR B 912 SER B 968 1 57 HELIX 5 AA5 LEU B 1012 GLU B 1027 1 16 HELIX 6 AA6 GLU B 1028 TYR B 1030 5 3 HELIX 7 AA7 THR C 912 SER C 968 1 57 HELIX 8 AA8 LEU C 1012 GLU C 1028 1 17 HELIX 9 AA9 GLN D 913 SER D 967 1 55 HELIX 10 AB1 LEU D 1012 GLU D 1028 1 17 HELIX 11 AB2 THR E 912 SER E 968 1 57 HELIX 12 AB3 LEU E 1012 GLU E 1027 1 16 HELIX 13 AB4 GLU E 1028 TYR E 1030 5 3 HELIX 14 AB5 GLN F 913 SER F 967 1 55 HELIX 15 AB6 LEU F 1012 GLU F 1027 1 16 HELIX 16 AB7 GLU F 1028 TYR F 1030 5 3 LINK O HOH A1102 CA CA D1101 1555 1555 2.72 LINK OD1 ASP D 950 CA CA D1101 1555 1555 3.17 LINK OD2 ASP D 950 CA CA D1101 1555 1555 2.51 LINK CA CA D1101 O HOH D1206 1555 1555 2.01 LINK OD1 ASP E1032 CA CA E1101 1555 1555 2.86 LINK O LEU E1033 CA CA E1101 1555 1555 2.68 LINK OE1 GLU E1035 CA CA E1101 1555 1555 3.03 LINK OE2 GLU E1035 CA CA E1101 1555 1555 3.06 LINK CA CA E1101 O HOH E1206 1555 1555 2.55 LINK CA CA E1101 O HOH E1226 1555 1555 2.56 SITE 1 AC1 3 HOH A1102 ASP D 950 HOH D1206 SITE 1 AC2 5 ASP E1032 LEU E1033 GLU E1035 HOH E1206 SITE 2 AC2 5 HOH E1226 CRYST1 133.815 138.141 71.461 90.00 90.00 90.00 C 2 2 21 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007473 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013994 0.00000