HEADER SUGAR BINDING PROTEIN 21-MAY-20 7C68 TITLE CRYSTAL STRUCTURE OF BETA-GLYCOSIDES-BINDING PROTEIN OF ABC TITLE 2 TRANSPORTER IN A CLOSED STATE BOUND TO CELLOTETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER, PERIPLASMIC SUGAR-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 ATCC: 27634; SOURCE 7 GENE: TTHB082; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMI; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CONFORMATIONAL DYNAMICS, SUBSTRATE-BINDING PROTEIN, INDUCED-FIT KEYWDS 2 MECHANISM, TWO-STEP LIGAND BINDING, VENUS FLY-TRAP MECHANISM, SUGAR KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,M.CHANDRAVANSHI,R.SAMANTA REVDAT 3 29-NOV-23 7C68 1 REMARK REVDAT 2 14-OCT-20 7C68 1 JRNL REVDAT 1 16-SEP-20 7C68 0 JRNL AUTH M.CHANDRAVANSHI,R.SAMANTA,S.P.KANAUJIA JRNL TITL CONFORMATIONAL TRAPPING OF A BETA-GLUCOSIDES-BINDING PROTEIN JRNL TITL 2 UNVEILS THE SELECTIVE TWO-STEP LIGAND-BINDING MECHANISM OF JRNL TITL 3 ABC IMPORTERS. JRNL REF J.MOL.BIOL. V. 432 5711 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32866452 JRNL DOI 10.1016/J.JMB.2020.08.021 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 46346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3391 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 463 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -1.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.757 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6679 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6126 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9094 ; 1.828 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14211 ; 1.472 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 830 ; 6.752 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 314 ;33.432 ;22.070 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1006 ;16.299 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;21.733 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 857 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7429 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1433 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 417 B 2 417 13264 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 417 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2048 -16.2779 -29.5200 REMARK 3 T TENSOR REMARK 3 T11: 0.0489 T22: 0.0021 REMARK 3 T33: 0.0484 T12: -0.0078 REMARK 3 T13: 0.0025 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.6211 L22: 0.4572 REMARK 3 L33: 0.2557 L12: -0.1424 REMARK 3 L13: -0.0012 L23: -0.0828 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0113 S13: -0.0270 REMARK 3 S21: -0.0190 S22: -0.0140 S23: 0.0093 REMARK 3 S31: 0.0109 S32: -0.0010 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 418 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7039 -1.2760 -7.7236 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: 0.0395 REMARK 3 T33: 0.0564 T12: 0.0017 REMARK 3 T13: 0.0026 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.7156 L22: 0.4460 REMARK 3 L33: 1.2453 L12: 0.2679 REMARK 3 L13: -0.6143 L23: -0.4992 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: -0.1054 S13: 0.1232 REMARK 3 S21: 0.0203 S22: -0.0092 S23: -0.0490 REMARK 3 S31: 0.0065 S32: 0.0016 S33: -0.0003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7C68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300017084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48888 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 55.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7C63 REMARK 200 REMARK 200 REMARK: ORTHORHOMBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 40% PEG 8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.31500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.78500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.78500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.31500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 MET B 0 REMARK 465 GLN B 1 REMARK 465 ALA B 266 REMARK 465 LYS B 267 REMARK 465 GLY B 268 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 265 NH1 ARG A 273 1.96 REMARK 500 O HOH A 832 O HOH B 757 1.99 REMARK 500 NZ LYS A 35 O HOH A 601 2.15 REMARK 500 OE1 GLN A 262 O HOH A 602 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 33 CD GLU A 33 OE2 0.074 REMARK 500 GLU A 104 CD GLU A 104 OE2 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 397 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 291 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 291 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 354 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 175 -53.35 74.70 REMARK 500 PHE A 270 33.34 -143.15 REMARK 500 LEU B 94 134.35 -38.36 REMARK 500 ASN B 175 -57.20 75.06 REMARK 500 PHE B 270 26.08 -143.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 863 DISTANCE = 5.88 ANGSTROMS DBREF 7C68 A 1 416 UNP Q53W80 Q53W80_THET8 19 434 DBREF 7C68 B 1 416 UNP Q53W80 Q53W80_THET8 19 434 SEQADV 7C68 MET A 0 UNP Q53W80 INITIATING METHIONINE SEQADV 7C68 HIS A 417 UNP Q53W80 EXPRESSION TAG SEQADV 7C68 HIS A 418 UNP Q53W80 EXPRESSION TAG SEQADV 7C68 HIS A 419 UNP Q53W80 EXPRESSION TAG SEQADV 7C68 HIS A 420 UNP Q53W80 EXPRESSION TAG SEQADV 7C68 HIS A 421 UNP Q53W80 EXPRESSION TAG SEQADV 7C68 HIS A 422 UNP Q53W80 EXPRESSION TAG SEQADV 7C68 MET B 0 UNP Q53W80 INITIATING METHIONINE SEQADV 7C68 HIS B 417 UNP Q53W80 EXPRESSION TAG SEQADV 7C68 HIS B 418 UNP Q53W80 EXPRESSION TAG SEQADV 7C68 HIS B 419 UNP Q53W80 EXPRESSION TAG SEQADV 7C68 HIS B 420 UNP Q53W80 EXPRESSION TAG SEQADV 7C68 HIS B 421 UNP Q53W80 EXPRESSION TAG SEQADV 7C68 HIS B 422 UNP Q53W80 EXPRESSION TAG SEQRES 1 A 423 MET GLN LYS THR LEU GLU VAL TRP ILE MET PRO ASN SER SEQRES 2 A 423 PRO GLN PRO ALA GLU ASP PHE LYS ALA LEU VAL ALA PRO SEQRES 3 A 423 PHE GLU LYS ALA HIS GLY VAL GLU VAL LYS VAL THR VAL SEQRES 4 A 423 LEU ASP TRP GLY VAL ALA TRP THR LYS ILE THR THR ALA SEQRES 5 A 423 ALA THR SER GLY VAL GLY PRO ASP LEU THR GLN LEU GLY SEQRES 6 A 423 THR THR TRP VAL GLY ALA ILE SER ALA MET GLY VAL LEU SEQRES 7 A 423 GLU PRO VAL ASP ASP VAL LEU GLU ALA LEU GLY GLY GLU SEQRES 8 A 423 LYS ALA TYR LEU PRO ALA VAL TRP ARG THR THR ARG LEU SEQRES 9 A 423 GLU GLY ALA ARG GLN ALA THR ALA VAL PRO TRP PHE SER SEQRES 10 A 423 GLU LEU ARG ALA PHE TYR TYR ARG THR ASP ALA LEU LYS SEQRES 11 A 423 ALA ALA GLY VAL ASN PRO ALA GLU MET PHE ALA SER TRP SEQRES 12 A 423 GLN GLY PHE GLU ALA GLY LEU ALA ARG LEU LYS ALA SER SEQRES 13 A 423 SER PHE ARG ASP PRO GLU THR LYS ALA PRO LEU ALA PRO SEQRES 14 A 423 LEU CYS THR PRO GLY LYS ASN SER TRP ASP VAL LEU HIS SEQRES 15 A 423 ASN ALA ALA PRO TRP ILE TRP GLY ALA GLY GLY GLU ILE SEQRES 16 A 423 VAL ARG GLN ALA GLY GLY ARG TRP GLN SER ALA LEU ASN SEQRES 17 A 423 SER PRO GLU SER LEU GLU GLY LEU TYR PHE PHE LEU SER SEQRES 18 A 423 LEU ALA GLN LYS GLY TYR VAL PRO ALA GLU SER LEU GLU SEQRES 19 A 423 LYS ASN THR ALA GLN ILE GLU ALA ASP PHE GLN ALA GLY SEQRES 20 A 423 LYS CYS ALA VAL PHE ALA SER GLY PRO TRP MET ILE GLN SEQRES 21 A 423 ARG ALA GLN VAL PRO GLU ALA LYS GLY GLY PHE ALA GLU SEQRES 22 A 423 ARG THR ALA ALA LYS ASN LEU GLY VAL ALA PRO TYR PRO SEQRES 23 A 423 ALA GLY PRO LYS GLY ARG TYR THR PHE PHE GLY GLY SER SEQRES 24 A 423 ASN LEU ALA LEU PHE ASN PHE SER LYS ASN LYS PRO LEU SEQRES 25 A 423 ALA LYS GLU LEU LEU LYS TYR LEU GLY GLY PRO GLU ALA SEQRES 26 A 423 GLN VAL ARG TYR ALA GLN MET THR GLY MET LEU PRO ALA SEQRES 27 A 423 LEU ARG SER ALA TRP SER ASP PRO SER PHE GLN GLN ASN SEQRES 28 A 423 PRO LEU LEU ARG THR PHE ILE GLN ALA ALA GLN PHE GLY SEQRES 29 A 423 ARG THR TYR PRO SER LEU ALA GLY TRP GLY GLY VAL GLU SEQRES 30 A 423 ASN LEU ALA VAL GLN HIS LEU GLY MET ALA TRP ASP LEU SEQRES 31 A 423 VAL ALA GLN GLY ARG LEU THR ARG GLU ALA LEU LYS ASP SEQRES 32 A 423 LEU MET ASP LYS ALA SER ALA ALA ILE ASN GLN ALA LEU SEQRES 33 A 423 ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 423 MET GLN LYS THR LEU GLU VAL TRP ILE MET PRO ASN SER SEQRES 2 B 423 PRO GLN PRO ALA GLU ASP PHE LYS ALA LEU VAL ALA PRO SEQRES 3 B 423 PHE GLU LYS ALA HIS GLY VAL GLU VAL LYS VAL THR VAL SEQRES 4 B 423 LEU ASP TRP GLY VAL ALA TRP THR LYS ILE THR THR ALA SEQRES 5 B 423 ALA THR SER GLY VAL GLY PRO ASP LEU THR GLN LEU GLY SEQRES 6 B 423 THR THR TRP VAL GLY ALA ILE SER ALA MET GLY VAL LEU SEQRES 7 B 423 GLU PRO VAL ASP ASP VAL LEU GLU ALA LEU GLY GLY GLU SEQRES 8 B 423 LYS ALA TYR LEU PRO ALA VAL TRP ARG THR THR ARG LEU SEQRES 9 B 423 GLU GLY ALA ARG GLN ALA THR ALA VAL PRO TRP PHE SER SEQRES 10 B 423 GLU LEU ARG ALA PHE TYR TYR ARG THR ASP ALA LEU LYS SEQRES 11 B 423 ALA ALA GLY VAL ASN PRO ALA GLU MET PHE ALA SER TRP SEQRES 12 B 423 GLN GLY PHE GLU ALA GLY LEU ALA ARG LEU LYS ALA SER SEQRES 13 B 423 SER PHE ARG ASP PRO GLU THR LYS ALA PRO LEU ALA PRO SEQRES 14 B 423 LEU CYS THR PRO GLY LYS ASN SER TRP ASP VAL LEU HIS SEQRES 15 B 423 ASN ALA ALA PRO TRP ILE TRP GLY ALA GLY GLY GLU ILE SEQRES 16 B 423 VAL ARG GLN ALA GLY GLY ARG TRP GLN SER ALA LEU ASN SEQRES 17 B 423 SER PRO GLU SER LEU GLU GLY LEU TYR PHE PHE LEU SER SEQRES 18 B 423 LEU ALA GLN LYS GLY TYR VAL PRO ALA GLU SER LEU GLU SEQRES 19 B 423 LYS ASN THR ALA GLN ILE GLU ALA ASP PHE GLN ALA GLY SEQRES 20 B 423 LYS CYS ALA VAL PHE ALA SER GLY PRO TRP MET ILE GLN SEQRES 21 B 423 ARG ALA GLN VAL PRO GLU ALA LYS GLY GLY PHE ALA GLU SEQRES 22 B 423 ARG THR ALA ALA LYS ASN LEU GLY VAL ALA PRO TYR PRO SEQRES 23 B 423 ALA GLY PRO LYS GLY ARG TYR THR PHE PHE GLY GLY SER SEQRES 24 B 423 ASN LEU ALA LEU PHE ASN PHE SER LYS ASN LYS PRO LEU SEQRES 25 B 423 ALA LYS GLU LEU LEU LYS TYR LEU GLY GLY PRO GLU ALA SEQRES 26 B 423 GLN VAL ARG TYR ALA GLN MET THR GLY MET LEU PRO ALA SEQRES 27 B 423 LEU ARG SER ALA TRP SER ASP PRO SER PHE GLN GLN ASN SEQRES 28 B 423 PRO LEU LEU ARG THR PHE ILE GLN ALA ALA GLN PHE GLY SEQRES 29 B 423 ARG THR TYR PRO SER LEU ALA GLY TRP GLY GLY VAL GLU SEQRES 30 B 423 ASN LEU ALA VAL GLN HIS LEU GLY MET ALA TRP ASP LEU SEQRES 31 B 423 VAL ALA GLN GLY ARG LEU THR ARG GLU ALA LEU LYS ASP SEQRES 32 B 423 LEU MET ASP LYS ALA SER ALA ALA ILE ASN GLN ALA LEU SEQRES 33 B 423 ARG HIS HIS HIS HIS HIS HIS HET BGC C 1 12 HET BGC C 2 11 HET BGC C 3 11 HET BGC C 4 11 HET BGC D 1 12 HET BGC D 2 11 HET BGC D 3 11 HET BGC D 4 11 HET CL A 501 1 HET CL A 502 1 HET SO2 A 503 3 HET SO3 A 504 4 HET SO3 A 505 4 HET SO4 A 506 5 HET CO2 A 507 3 HET EDO A 508 4 HET EDO A 509 4 HET CL B 501 1 HET CL B 502 1 HET CL B 503 1 HET SO4 B 504 5 HET EDO B 505 4 HET EDO B 506 4 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM SO2 SULFUR DIOXIDE HETNAM SO3 SULFITE ION HETNAM SO4 SULFATE ION HETNAM CO2 CARBON DIOXIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 BGC 8(C6 H12 O6) FORMUL 5 CL 5(CL 1-) FORMUL 7 SO2 O2 S FORMUL 8 SO3 2(O3 S 2-) FORMUL 10 SO4 2(O4 S 2-) FORMUL 11 CO2 C O2 FORMUL 12 EDO 4(C2 H6 O2) FORMUL 20 HOH *463(H2 O) HELIX 1 AA1 GLN A 14 GLY A 31 1 18 HELIX 2 AA2 ASP A 40 GLY A 55 1 16 HELIX 3 AA3 TRP A 67 ALA A 73 1 7 HELIX 4 AA4 VAL A 80 LEU A 87 1 8 HELIX 5 AA5 GLY A 88 TYR A 93 5 6 HELIX 6 AA6 LEU A 94 THR A 100 1 7 HELIX 7 AA7 THR A 125 GLY A 132 1 8 HELIX 8 AA8 ASN A 134 PHE A 139 1 6 HELIX 9 AA9 SER A 141 SER A 155 1 15 HELIX 10 AB1 TRP A 177 ALA A 190 1 14 HELIX 11 AB2 SER A 208 LYS A 224 1 17 HELIX 12 AB3 PRO A 228 LYS A 234 5 7 HELIX 13 AB4 ASN A 235 ALA A 245 1 11 HELIX 14 AB5 PRO A 255 GLN A 262 1 8 HELIX 15 AB6 VAL A 263 GLY A 268 5 6 HELIX 16 AB7 ARG A 273 LYS A 277 5 5 HELIX 17 AB8 ASN A 308 GLY A 321 1 14 HELIX 18 AB9 GLY A 321 GLY A 333 1 13 HELIX 19 AC1 LEU A 338 SER A 343 5 6 HELIX 20 AC2 ASP A 344 GLN A 349 1 6 HELIX 21 AC3 ASN A 350 ALA A 360 1 11 HELIX 22 AC4 GLY A 371 GLN A 392 1 22 HELIX 23 AC5 THR A 396 HIS A 417 1 22 HELIX 24 AC6 GLN B 14 GLY B 31 1 18 HELIX 25 AC7 ASP B 40 GLY B 55 1 16 HELIX 26 AC8 TRP B 67 ALA B 73 1 7 HELIX 27 AC9 VAL B 80 LEU B 87 1 8 HELIX 28 AD1 GLY B 88 TYR B 93 5 6 HELIX 29 AD2 LEU B 94 THR B 100 1 7 HELIX 30 AD3 THR B 125 GLY B 132 1 8 HELIX 31 AD4 ASN B 134 PHE B 139 1 6 HELIX 32 AD5 SER B 141 SER B 155 1 15 HELIX 33 AD6 TRP B 177 ALA B 190 1 14 HELIX 34 AD7 SER B 208 LYS B 224 1 17 HELIX 35 AD8 PRO B 228 LYS B 234 5 7 HELIX 36 AD9 ASN B 235 ALA B 245 1 11 HELIX 37 AE1 PRO B 255 GLN B 262 1 8 HELIX 38 AE2 ARG B 273 ASN B 278 1 6 HELIX 39 AE3 ASN B 308 GLY B 321 1 14 HELIX 40 AE4 GLY B 321 GLY B 333 1 13 HELIX 41 AE5 LEU B 338 SER B 343 5 6 HELIX 42 AE6 ASP B 344 GLN B 349 1 6 HELIX 43 AE7 ASN B 350 ALA B 360 1 11 HELIX 44 AE8 GLY B 371 GLN B 392 1 22 HELIX 45 AE9 THR B 396 HIS B 417 1 22 SHEET 1 AA1 6 GLU A 33 VAL A 38 0 SHEET 2 AA1 6 THR A 3 ILE A 8 1 N LEU A 4 O LYS A 35 SHEET 3 AA1 6 LEU A 60 GLY A 64 1 O GLN A 62 N TRP A 7 SHEET 4 AA1 6 THR A 293 LEU A 302 -1 O ASN A 299 N LEU A 63 SHEET 5 AA1 6 VAL A 112 LEU A 118 -1 N VAL A 112 O LEU A 300 SHEET 6 AA1 6 LEU A 335 PRO A 336 -1 O LEU A 335 N SER A 116 SHEET 1 AA2 5 GLU A 33 VAL A 38 0 SHEET 2 AA2 5 THR A 3 ILE A 8 1 N LEU A 4 O LYS A 35 SHEET 3 AA2 5 LEU A 60 GLY A 64 1 O GLN A 62 N TRP A 7 SHEET 4 AA2 5 THR A 293 LEU A 302 -1 O ASN A 299 N LEU A 63 SHEET 5 AA2 5 GLY A 363 ARG A 364 1 O ARG A 364 N THR A 293 SHEET 1 AA3 4 ALA A 167 LEU A 169 0 SHEET 2 AA3 4 CYS A 248 SER A 253 1 O ALA A 249 N ALA A 167 SHEET 3 AA3 4 ALA A 120 ARG A 124 -1 N TYR A 122 O PHE A 251 SHEET 4 AA3 4 LEU A 279 ALA A 282 -1 O ALA A 282 N PHE A 121 SHEET 1 AA4 2 VAL A 195 ALA A 198 0 SHEET 2 AA4 2 ARG A 201 SER A 204 -1 O ARG A 201 N ALA A 198 SHEET 1 AA5 6 GLU B 33 VAL B 38 0 SHEET 2 AA5 6 THR B 3 ILE B 8 1 N LEU B 4 O LYS B 35 SHEET 3 AA5 6 LEU B 60 GLY B 64 1 O GLN B 62 N TRP B 7 SHEET 4 AA5 6 THR B 293 LEU B 302 -1 O ASN B 299 N LEU B 63 SHEET 5 AA5 6 VAL B 112 LEU B 118 -1 N GLU B 117 O GLY B 296 SHEET 6 AA5 6 LEU B 335 PRO B 336 -1 O LEU B 335 N SER B 116 SHEET 1 AA6 5 GLU B 33 VAL B 38 0 SHEET 2 AA6 5 THR B 3 ILE B 8 1 N LEU B 4 O LYS B 35 SHEET 3 AA6 5 LEU B 60 GLY B 64 1 O GLN B 62 N TRP B 7 SHEET 4 AA6 5 THR B 293 LEU B 302 -1 O ASN B 299 N LEU B 63 SHEET 5 AA6 5 GLY B 363 ARG B 364 1 O ARG B 364 N THR B 293 SHEET 1 AA7 4 ALA B 167 LEU B 169 0 SHEET 2 AA7 4 CYS B 248 SER B 253 1 O ALA B 249 N ALA B 167 SHEET 3 AA7 4 ALA B 120 ARG B 124 -1 N TYR B 122 O PHE B 251 SHEET 4 AA7 4 LEU B 279 ALA B 282 -1 O GLY B 280 N TYR B 123 SHEET 1 AA8 2 VAL B 195 ALA B 198 0 SHEET 2 AA8 2 ARG B 201 SER B 204 -1 O GLN B 203 N ARG B 196 SSBOND 1 CYS A 170 CYS A 248 1555 1555 2.16 SSBOND 2 CYS B 170 CYS B 248 1555 1555 2.12 LINK O4 BGC C 1 C1 BGC C 2 1555 1555 1.43 LINK O4 BGC C 2 C1 BGC C 3 1555 1555 1.39 LINK O4 BGC C 3 C1 BGC C 4 1555 1555 1.41 LINK O4 BGC D 1 C1 BGC D 2 1555 1555 1.45 LINK O4 BGC D 2 C1 BGC D 3 1555 1555 1.42 LINK O4 BGC D 3 C1 BGC D 4 1555 1555 1.39 CRYST1 62.630 109.740 111.570 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015967 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008963 0.00000