HEADER SUGAR BINDING PROTEIN 21-MAY-20 7C6G TITLE CRYSTAL STRUCTURE OF BETA-GLYCOSIDES-BINDING PROTEIN (W177X) OF ABC TITLE 2 TRANSPORTER IN AN OPEN-LIGANDED STATE BOUND TO GENTIOBIOSE CAVEAT 7C6G PGO A 504 HAS WRONG CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER, PERIPLASMIC SUGAR-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 ATCC: 27634; SOURCE 7 GENE: TTHB082; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CONFORMATIONAL DYNAMICS, SUBSTRATE-BINDING PROTEIN, INDUCED-FIT KEYWDS 2 MECHANISM, TWO-STEP LIGAND BINDING, VENUS FLY-TRAP MECHANISM, SUGAR KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,M.CHANDRAVANSHI,R.SAMANTA REVDAT 2 29-NOV-23 7C6G 1 REMARK REVDAT 1 21-OCT-20 7C6G 0 JRNL AUTH M.CHANDRAVANSHI,R.SAMANTA,S.P.KANAUJIA JRNL TITL CONFORMATIONAL TRAPPING OF A BETA-GLUCOSIDES-BINDING PROTEIN JRNL TITL 2 UNVEILS THE SELECTIVE TWO-STEP LIGAND-BINDING MECHANISM OF JRNL TITL 3 ABC IMPORTERS. JRNL REF J.MOL.BIOL. V. 432 5711 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32866452 JRNL DOI 10.1016/J.JMB.2020.08.021 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 50810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2572 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3531 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.98000 REMARK 3 B22 (A**2) : 3.23000 REMARK 3 B33 (A**2) : 3.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.040 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6698 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6189 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9129 ; 1.920 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14345 ; 1.477 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 849 ; 6.923 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 323 ;35.687 ;21.579 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1029 ;15.448 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;19.094 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 853 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7529 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1463 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 414 B 1 414 13229 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 419 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7579 -6.4172 28.3487 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0245 REMARK 3 T33: 0.0060 T12: 0.0099 REMARK 3 T13: -0.0138 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.8245 L22: 0.2014 REMARK 3 L33: 0.3685 L12: 0.1385 REMARK 3 L13: -0.0174 L23: -0.1311 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: -0.0842 S13: -0.0113 REMARK 3 S21: 0.0111 S22: -0.0032 S23: 0.0045 REMARK 3 S31: -0.0614 S32: -0.0077 S33: 0.0066 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 415 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7017 8.5760 -0.4766 REMARK 3 T TENSOR REMARK 3 T11: 0.0031 T22: 0.0599 REMARK 3 T33: 0.0256 T12: 0.0028 REMARK 3 T13: -0.0013 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.7768 L22: 0.2376 REMARK 3 L33: 0.4562 L12: -0.1565 REMARK 3 L13: 0.0182 L23: -0.1432 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: 0.0790 S13: 0.0769 REMARK 3 S21: -0.0070 S22: -0.0316 S23: -0.0224 REMARK 3 S31: 0.0293 S32: 0.0209 S33: 0.0195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7C6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300017087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53435 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7C63 REMARK 200 REMARK 200 REMARK: MONOCLINIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 45% PEG 8000, REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.77000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 MET B 0 REMARK 465 HIS B 416 REMARK 465 HIS B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 343 O HOH B 601 2.10 REMARK 500 OG1 THR B 364 O HOH B 602 2.17 REMARK 500 OE1 GLU A 397 O HOH A 601 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 104 CD GLU A 104 OE1 0.107 REMARK 500 GLU B 117 CD GLU B 117 OE1 0.071 REMARK 500 GLU B 137 CD GLU B 137 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 259 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 326 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 269 36.25 -149.07 REMARK 500 ALA B 197 136.98 -172.09 REMARK 500 PHE B 269 32.23 -148.89 REMARK 500 PRO B 344 -39.88 -38.84 REMARK 500 GLN B 348 40.84 -102.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 172 GLY B 173 139.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 827 DISTANCE = 6.39 ANGSTROMS DBREF 7C6G A 1 415 UNP Q53W80 Q53W80_THET8 19 434 DBREF 7C6G B 1 415 UNP Q53W80 Q53W80_THET8 19 434 SEQADV 7C6G MET A 0 UNP Q53W80 INITIATING METHIONINE SEQADV 7C6G ARG A 174 UNP Q53W80 LYS 192 ENGINEERED MUTATION SEQADV 7C6G THR A 175 UNP Q53W80 ASN 193 ENGINEERED MUTATION SEQADV 7C6G PRO A 176 UNP Q53W80 SER 194 ENGINEERED MUTATION SEQADV 7C6G A UNP Q53W80 TRP 195 DELETION SEQADV 7C6G ARG A 177 UNP Q53W80 ASP 196 ENGINEERED MUTATION SEQADV 7C6G THR A 178 UNP Q53W80 VAL 197 ENGINEERED MUTATION SEQADV 7C6G HIS A 416 UNP Q53W80 EXPRESSION TAG SEQADV 7C6G HIS A 417 UNP Q53W80 EXPRESSION TAG SEQADV 7C6G HIS A 418 UNP Q53W80 EXPRESSION TAG SEQADV 7C6G HIS A 419 UNP Q53W80 EXPRESSION TAG SEQADV 7C6G HIS A 420 UNP Q53W80 EXPRESSION TAG SEQADV 7C6G HIS A 421 UNP Q53W80 EXPRESSION TAG SEQADV 7C6G MET B 0 UNP Q53W80 INITIATING METHIONINE SEQADV 7C6G ARG B 174 UNP Q53W80 LYS 192 ENGINEERED MUTATION SEQADV 7C6G THR B 175 UNP Q53W80 ASN 193 ENGINEERED MUTATION SEQADV 7C6G PRO B 176 UNP Q53W80 SER 194 ENGINEERED MUTATION SEQADV 7C6G B UNP Q53W80 TRP 195 DELETION SEQADV 7C6G ARG B 177 UNP Q53W80 ASP 196 ENGINEERED MUTATION SEQADV 7C6G THR B 178 UNP Q53W80 VAL 197 ENGINEERED MUTATION SEQADV 7C6G HIS B 416 UNP Q53W80 EXPRESSION TAG SEQADV 7C6G HIS B 417 UNP Q53W80 EXPRESSION TAG SEQADV 7C6G HIS B 418 UNP Q53W80 EXPRESSION TAG SEQADV 7C6G HIS B 419 UNP Q53W80 EXPRESSION TAG SEQADV 7C6G HIS B 420 UNP Q53W80 EXPRESSION TAG SEQADV 7C6G HIS B 421 UNP Q53W80 EXPRESSION TAG SEQRES 1 A 422 MET GLN LYS THR LEU GLU VAL TRP ILE MET PRO ASN SER SEQRES 2 A 422 PRO GLN PRO ALA GLU ASP PHE LYS ALA LEU VAL ALA PRO SEQRES 3 A 422 PHE GLU LYS ALA HIS GLY VAL GLU VAL LYS VAL THR VAL SEQRES 4 A 422 LEU ASP TRP GLY VAL ALA TRP THR LYS ILE THR THR ALA SEQRES 5 A 422 ALA THR SER GLY VAL GLY PRO ASP LEU THR GLN LEU GLY SEQRES 6 A 422 THR THR TRP VAL GLY ALA ILE SER ALA MET GLY VAL LEU SEQRES 7 A 422 GLU PRO VAL ASP ASP VAL LEU GLU ALA LEU GLY GLY GLU SEQRES 8 A 422 LYS ALA TYR LEU PRO ALA VAL TRP ARG THR THR ARG LEU SEQRES 9 A 422 GLU GLY ALA ARG GLN ALA THR ALA VAL PRO TRP PHE SER SEQRES 10 A 422 GLU LEU ARG ALA PHE TYR TYR ARG THR ASP ALA LEU LYS SEQRES 11 A 422 ALA ALA GLY VAL ASN PRO ALA GLU MET PHE ALA SER TRP SEQRES 12 A 422 GLN GLY PHE GLU ALA GLY LEU ALA ARG LEU LYS ALA SER SEQRES 13 A 422 SER PHE ARG ASP PRO GLU THR LYS ALA PRO LEU ALA PRO SEQRES 14 A 422 LEU CYS THR PRO GLY ARG THR PRO ARG THR LEU HIS ASN SEQRES 15 A 422 ALA ALA PRO TRP ILE TRP GLY ALA GLY GLY GLU ILE VAL SEQRES 16 A 422 ARG GLN ALA GLY GLY ARG TRP GLN SER ALA LEU ASN SER SEQRES 17 A 422 PRO GLU SER LEU GLU GLY LEU TYR PHE PHE LEU SER LEU SEQRES 18 A 422 ALA GLN LYS GLY TYR VAL PRO ALA GLU SER LEU GLU LYS SEQRES 19 A 422 ASN THR ALA GLN ILE GLU ALA ASP PHE GLN ALA GLY LYS SEQRES 20 A 422 CYS ALA VAL PHE ALA SER GLY PRO TRP MET ILE GLN ARG SEQRES 21 A 422 ALA GLN VAL PRO GLU ALA LYS GLY GLY PHE ALA GLU ARG SEQRES 22 A 422 THR ALA ALA LYS ASN LEU GLY VAL ALA PRO TYR PRO ALA SEQRES 23 A 422 GLY PRO LYS GLY ARG TYR THR PHE PHE GLY GLY SER ASN SEQRES 24 A 422 LEU ALA LEU PHE ASN PHE SER LYS ASN LYS PRO LEU ALA SEQRES 25 A 422 LYS GLU LEU LEU LYS TYR LEU GLY GLY PRO GLU ALA GLN SEQRES 26 A 422 VAL ARG TYR ALA GLN MET THR GLY MET LEU PRO ALA LEU SEQRES 27 A 422 ARG SER ALA TRP SER ASP PRO SER PHE GLN GLN ASN PRO SEQRES 28 A 422 LEU LEU ARG THR PHE ILE GLN ALA ALA GLN PHE GLY ARG SEQRES 29 A 422 THR TYR PRO SER LEU ALA GLY TRP GLY GLY VAL GLU ASN SEQRES 30 A 422 LEU ALA VAL GLN HIS LEU GLY MET ALA TRP ASP LEU VAL SEQRES 31 A 422 ALA GLN GLY ARG LEU THR ARG GLU ALA LEU LYS ASP LEU SEQRES 32 A 422 MET ASP LYS ALA SER ALA ALA ILE ASN GLN ALA LEU ARG SEQRES 33 A 422 HIS HIS HIS HIS HIS HIS SEQRES 1 B 422 MET GLN LYS THR LEU GLU VAL TRP ILE MET PRO ASN SER SEQRES 2 B 422 PRO GLN PRO ALA GLU ASP PHE LYS ALA LEU VAL ALA PRO SEQRES 3 B 422 PHE GLU LYS ALA HIS GLY VAL GLU VAL LYS VAL THR VAL SEQRES 4 B 422 LEU ASP TRP GLY VAL ALA TRP THR LYS ILE THR THR ALA SEQRES 5 B 422 ALA THR SER GLY VAL GLY PRO ASP LEU THR GLN LEU GLY SEQRES 6 B 422 THR THR TRP VAL GLY ALA ILE SER ALA MET GLY VAL LEU SEQRES 7 B 422 GLU PRO VAL ASP ASP VAL LEU GLU ALA LEU GLY GLY GLU SEQRES 8 B 422 LYS ALA TYR LEU PRO ALA VAL TRP ARG THR THR ARG LEU SEQRES 9 B 422 GLU GLY ALA ARG GLN ALA THR ALA VAL PRO TRP PHE SER SEQRES 10 B 422 GLU LEU ARG ALA PHE TYR TYR ARG THR ASP ALA LEU LYS SEQRES 11 B 422 ALA ALA GLY VAL ASN PRO ALA GLU MET PHE ALA SER TRP SEQRES 12 B 422 GLN GLY PHE GLU ALA GLY LEU ALA ARG LEU LYS ALA SER SEQRES 13 B 422 SER PHE ARG ASP PRO GLU THR LYS ALA PRO LEU ALA PRO SEQRES 14 B 422 LEU CYS THR PRO GLY ARG THR PRO ARG THR LEU HIS ASN SEQRES 15 B 422 ALA ALA PRO TRP ILE TRP GLY ALA GLY GLY GLU ILE VAL SEQRES 16 B 422 ARG GLN ALA GLY GLY ARG TRP GLN SER ALA LEU ASN SER SEQRES 17 B 422 PRO GLU SER LEU GLU GLY LEU TYR PHE PHE LEU SER LEU SEQRES 18 B 422 ALA GLN LYS GLY TYR VAL PRO ALA GLU SER LEU GLU LYS SEQRES 19 B 422 ASN THR ALA GLN ILE GLU ALA ASP PHE GLN ALA GLY LYS SEQRES 20 B 422 CYS ALA VAL PHE ALA SER GLY PRO TRP MET ILE GLN ARG SEQRES 21 B 422 ALA GLN VAL PRO GLU ALA LYS GLY GLY PHE ALA GLU ARG SEQRES 22 B 422 THR ALA ALA LYS ASN LEU GLY VAL ALA PRO TYR PRO ALA SEQRES 23 B 422 GLY PRO LYS GLY ARG TYR THR PHE PHE GLY GLY SER ASN SEQRES 24 B 422 LEU ALA LEU PHE ASN PHE SER LYS ASN LYS PRO LEU ALA SEQRES 25 B 422 LYS GLU LEU LEU LYS TYR LEU GLY GLY PRO GLU ALA GLN SEQRES 26 B 422 VAL ARG TYR ALA GLN MET THR GLY MET LEU PRO ALA LEU SEQRES 27 B 422 ARG SER ALA TRP SER ASP PRO SER PHE GLN GLN ASN PRO SEQRES 28 B 422 LEU LEU ARG THR PHE ILE GLN ALA ALA GLN PHE GLY ARG SEQRES 29 B 422 THR TYR PRO SER LEU ALA GLY TRP GLY GLY VAL GLU ASN SEQRES 30 B 422 LEU ALA VAL GLN HIS LEU GLY MET ALA TRP ASP LEU VAL SEQRES 31 B 422 ALA GLN GLY ARG LEU THR ARG GLU ALA LEU LYS ASP LEU SEQRES 32 B 422 MET ASP LYS ALA SER ALA ALA ILE ASN GLN ALA LEU ARG SEQRES 33 B 422 HIS HIS HIS HIS HIS HIS HET BGC C 1 12 HET BGC C 2 11 HET BGC D 1 12 HET BGC D 2 11 HET CL A 501 1 HET CL A 502 1 HET SO4 A 503 5 HET PGO A 504 5 HET CL B 501 1 HET CO2 B 502 3 HET EDO B 503 4 HET SO3 B 504 4 HET SO4 B 505 5 HET SO4 B 506 5 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM PGO S-1,2-PROPANEDIOL HETNAM CO2 CARBON DIOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO3 SULFITE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 BGC 4(C6 H12 O6) FORMUL 5 CL 3(CL 1-) FORMUL 7 SO4 3(O4 S 2-) FORMUL 8 PGO C3 H8 O2 FORMUL 10 CO2 C O2 FORMUL 11 EDO C2 H6 O2 FORMUL 12 SO3 O3 S 2- FORMUL 15 HOH *470(H2 O) HELIX 1 AA1 GLN A 14 GLY A 31 1 18 HELIX 2 AA2 VAL A 43 GLY A 55 1 13 HELIX 3 AA3 TRP A 67 MET A 74 1 8 HELIX 4 AA4 VAL A 80 LEU A 87 1 8 HELIX 5 AA5 GLY A 89 TYR A 93 5 5 HELIX 6 AA6 LEU A 94 ARG A 99 1 6 HELIX 7 AA7 THR A 100 ARG A 102 5 3 HELIX 8 AA8 THR A 125 GLY A 132 1 8 HELIX 9 AA9 ASN A 134 PHE A 139 1 6 HELIX 10 AB1 SER A 141 SER A 155 1 15 HELIX 11 AB2 ARG A 177 ALA A 189 1 13 HELIX 12 AB3 SER A 207 LYS A 223 1 17 HELIX 13 AB4 PRO A 227 LYS A 233 5 7 HELIX 14 AB5 ASN A 234 ALA A 244 1 11 HELIX 15 AB6 PRO A 254 VAL A 262 1 9 HELIX 16 AB7 PRO A 263 GLY A 267 5 5 HELIX 17 AB8 ARG A 272 ASN A 277 1 6 HELIX 18 AB9 ASN A 307 GLY A 320 1 14 HELIX 19 AC1 GLY A 320 GLY A 332 1 13 HELIX 20 AC2 LEU A 337 SER A 342 5 6 HELIX 21 AC3 ASP A 343 GLN A 348 1 6 HELIX 22 AC4 ASN A 349 GLN A 360 1 12 HELIX 23 AC5 GLY A 370 GLN A 391 1 22 HELIX 24 AC6 THR A 395 HIS A 417 1 23 HELIX 25 AC7 GLN B 14 GLY B 31 1 18 HELIX 26 AC8 ASP B 40 GLY B 55 1 16 HELIX 27 AC9 TRP B 67 MET B 74 1 8 HELIX 28 AD1 VAL B 80 LEU B 87 1 8 HELIX 29 AD2 GLY B 88 TYR B 93 5 6 HELIX 30 AD3 LEU B 94 THR B 100 1 7 HELIX 31 AD4 THR B 125 ALA B 131 1 7 HELIX 32 AD5 ASN B 134 PHE B 139 1 6 HELIX 33 AD6 SER B 141 SER B 155 1 15 HELIX 34 AD7 ARG B 177 ALA B 189 1 13 HELIX 35 AD8 SER B 207 LYS B 223 1 17 HELIX 36 AD9 PRO B 227 LYS B 233 5 7 HELIX 37 AE1 ASN B 234 ALA B 244 1 11 HELIX 38 AE2 PRO B 254 VAL B 262 1 9 HELIX 39 AE3 PRO B 263 GLY B 267 5 5 HELIX 40 AE4 ARG B 272 ASN B 277 1 6 HELIX 41 AE5 ASN B 307 GLY B 320 1 14 HELIX 42 AE6 GLY B 320 GLY B 332 1 13 HELIX 43 AE7 LEU B 337 SER B 342 5 6 HELIX 44 AE8 ASP B 343 GLN B 348 1 6 HELIX 45 AE9 ASN B 349 GLN B 360 1 12 HELIX 46 AF1 GLY B 370 GLY B 392 1 23 HELIX 47 AF2 THR B 395 LEU B 414 1 20 SHEET 1 AA1 6 VAL A 32 VAL A 38 0 SHEET 2 AA1 6 LYS A 2 ILE A 8 1 N LEU A 4 O LYS A 35 SHEET 3 AA1 6 LEU A 60 GLY A 64 1 O GLN A 62 N TRP A 7 SHEET 4 AA1 6 THR A 292 LEU A 301 -1 O ASN A 298 N LEU A 63 SHEET 5 AA1 6 VAL A 112 LEU A 118 -1 N VAL A 112 O LEU A 299 SHEET 6 AA1 6 LEU A 334 PRO A 335 -1 O LEU A 334 N SER A 116 SHEET 1 AA2 5 VAL A 32 VAL A 38 0 SHEET 2 AA2 5 LYS A 2 ILE A 8 1 N LEU A 4 O LYS A 35 SHEET 3 AA2 5 LEU A 60 GLY A 64 1 O GLN A 62 N TRP A 7 SHEET 4 AA2 5 THR A 292 LEU A 301 -1 O ASN A 298 N LEU A 63 SHEET 5 AA2 5 GLY A 362 ARG A 363 1 O ARG A 363 N PHE A 294 SHEET 1 AA3 4 ALA A 167 LEU A 169 0 SHEET 2 AA3 4 CYS A 247 SER A 252 1 O ALA A 248 N ALA A 167 SHEET 3 AA3 4 ALA A 120 ARG A 124 -1 N TYR A 122 O PHE A 250 SHEET 4 AA3 4 LEU A 278 ALA A 281 -1 O ALA A 281 N PHE A 121 SHEET 1 AA4 2 VAL A 194 ALA A 197 0 SHEET 2 AA4 2 ARG A 200 SER A 203 -1 O ARG A 200 N ALA A 197 SHEET 1 AA5 6 VAL B 32 VAL B 38 0 SHEET 2 AA5 6 LYS B 2 ILE B 8 1 N LEU B 4 O LYS B 35 SHEET 3 AA5 6 LEU B 60 GLY B 64 1 O GLN B 62 N TRP B 7 SHEET 4 AA5 6 THR B 292 LEU B 301 -1 O ALA B 300 N THR B 61 SHEET 5 AA5 6 VAL B 112 LEU B 118 -1 N VAL B 112 O LEU B 299 SHEET 6 AA5 6 LEU B 334 PRO B 335 -1 O LEU B 334 N SER B 116 SHEET 1 AA6 5 VAL B 32 VAL B 38 0 SHEET 2 AA6 5 LYS B 2 ILE B 8 1 N LEU B 4 O LYS B 35 SHEET 3 AA6 5 LEU B 60 GLY B 64 1 O GLN B 62 N TRP B 7 SHEET 4 AA6 5 THR B 292 LEU B 301 -1 O ALA B 300 N THR B 61 SHEET 5 AA6 5 GLY B 362 ARG B 363 1 O ARG B 363 N THR B 292 SHEET 1 AA7 3 VAL B 249 SER B 252 0 SHEET 2 AA7 3 ALA B 120 ARG B 124 -1 N TYR B 122 O PHE B 250 SHEET 3 AA7 3 LEU B 278 ALA B 281 -1 O ALA B 281 N PHE B 121 SHEET 1 AA8 2 VAL B 194 ALA B 197 0 SHEET 2 AA8 2 ARG B 200 SER B 203 -1 O GLN B 202 N ARG B 195 SSBOND 1 CYS A 170 CYS A 247 1555 1555 2.06 SSBOND 2 CYS B 170 CYS B 247 1555 1555 2.08 LINK O6 BGC C 1 C1 BGC C 2 1555 1555 1.44 LINK O6 BGC D 1 C1 BGC D 2 1555 1555 1.39 CRYST1 62.340 91.540 69.390 90.00 112.51 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016041 0.000000 0.006648 0.00000 SCALE2 0.000000 0.010924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015600 0.00000