HEADER SUGAR BINDING PROTEIN 22-MAY-20 7C71 TITLE CRYSTAL STRUCTURE OF BETA-GLYCOSIDES-BINDING PROTEIN (E117A) OF ABC TITLE 2 TRANSPORTER IN AN OPEN STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER, PERIPLASMIC SUGAR-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 ATCC: 27634; SOURCE 6 GENE: TTHB082; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CONFORMATIONAL DYNAMICS, SUBSTRATE-BINDING PROTEIN, INDUCED-FIT KEYWDS 2 MECHANISM, TWO-STEP LIGAND BINDING, VENUS FLY-TRAP MECHANISM, SUGAR KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,M.CHANDRAVANSHI,R.SAMANTA REVDAT 3 29-NOV-23 7C71 1 REMARK REVDAT 2 14-OCT-20 7C71 1 JRNL REVDAT 1 16-SEP-20 7C71 0 JRNL AUTH M.CHANDRAVANSHI,R.SAMANTA,S.P.KANAUJIA JRNL TITL CONFORMATIONAL TRAPPING OF A BETA-GLUCOSIDES-BINDING PROTEIN JRNL TITL 2 UNVEILS THE SELECTIVE TWO-STEP LIGAND-BINDING MECHANISM OF JRNL TITL 3 ABC IMPORTERS. JRNL REF J.MOL.BIOL. V. 432 5711 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32866452 JRNL DOI 10.1016/J.JMB.2020.08.021 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2147 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2993 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.329 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6585 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6112 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8949 ; 1.646 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14158 ; 1.404 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 836 ; 6.711 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 310 ;34.743 ;22.065 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1009 ;16.365 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;19.741 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 818 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7428 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1430 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 416 B 2 416 13179 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6916 -15.7231 19.4055 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.0119 REMARK 3 T33: 0.0057 T12: 0.0011 REMARK 3 T13: -0.0002 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.2967 L22: 0.3594 REMARK 3 L33: 0.1276 L12: -0.1869 REMARK 3 L13: 0.0446 L23: -0.0899 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: 0.0148 S13: -0.0309 REMARK 3 S21: -0.0124 S22: -0.0014 S23: 0.0276 REMARK 3 S31: -0.0229 S32: 0.0243 S33: -0.0067 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 416 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3982 -15.1425 -10.8833 REMARK 3 T TENSOR REMARK 3 T11: 0.0168 T22: 0.0035 REMARK 3 T33: 0.0065 T12: 0.0009 REMARK 3 T13: 0.0083 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.3422 L22: 0.1562 REMARK 3 L33: 0.3614 L12: -0.0867 REMARK 3 L13: 0.0017 L23: 0.0775 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.0024 S13: 0.0124 REMARK 3 S21: -0.0079 S22: 0.0036 S23: 0.0059 REMARK 3 S31: 0.0066 S32: 0.0350 S33: -0.0023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7C71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300017077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42869 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 55.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7C63 REMARK 200 REMARK 200 REMARK: MONOCLINIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 30% PEG 8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.48000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLN A 1 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 MET B 0 REMARK 465 GLN B 1 REMARK 465 HIS B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 866 O HOH A 899 2.05 REMARK 500 O HOH B 804 O HOH B 831 2.16 REMARK 500 O HOH B 865 O HOH B 881 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 731 O HOH B 793 1556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 175 59.73 -92.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 910 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B 901 DISTANCE = 5.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO2 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO2 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO3 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO2 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 505 DBREF 7C71 A 1 416 UNP Q53W80 Q53W80_THET8 19 434 DBREF 7C71 B 1 416 UNP Q53W80 Q53W80_THET8 19 434 SEQADV 7C71 MET A 0 UNP Q53W80 INITIATING METHIONINE SEQADV 7C71 ALA A 117 UNP Q53W80 GLU 135 ENGINEERED MUTATION SEQADV 7C71 HIS A 417 UNP Q53W80 EXPRESSION TAG SEQADV 7C71 HIS A 418 UNP Q53W80 EXPRESSION TAG SEQADV 7C71 HIS A 419 UNP Q53W80 EXPRESSION TAG SEQADV 7C71 HIS A 420 UNP Q53W80 EXPRESSION TAG SEQADV 7C71 HIS A 421 UNP Q53W80 EXPRESSION TAG SEQADV 7C71 HIS A 422 UNP Q53W80 EXPRESSION TAG SEQADV 7C71 MET B 0 UNP Q53W80 INITIATING METHIONINE SEQADV 7C71 ALA B 117 UNP Q53W80 GLU 135 ENGINEERED MUTATION SEQADV 7C71 HIS B 417 UNP Q53W80 EXPRESSION TAG SEQADV 7C71 HIS B 418 UNP Q53W80 EXPRESSION TAG SEQADV 7C71 HIS B 419 UNP Q53W80 EXPRESSION TAG SEQADV 7C71 HIS B 420 UNP Q53W80 EXPRESSION TAG SEQADV 7C71 HIS B 421 UNP Q53W80 EXPRESSION TAG SEQADV 7C71 HIS B 422 UNP Q53W80 EXPRESSION TAG SEQRES 1 A 423 MET GLN LYS THR LEU GLU VAL TRP ILE MET PRO ASN SER SEQRES 2 A 423 PRO GLN PRO ALA GLU ASP PHE LYS ALA LEU VAL ALA PRO SEQRES 3 A 423 PHE GLU LYS ALA HIS GLY VAL GLU VAL LYS VAL THR VAL SEQRES 4 A 423 LEU ASP TRP GLY VAL ALA TRP THR LYS ILE THR THR ALA SEQRES 5 A 423 ALA THR SER GLY VAL GLY PRO ASP LEU THR GLN LEU GLY SEQRES 6 A 423 THR THR TRP VAL GLY ALA ILE SER ALA MET GLY VAL LEU SEQRES 7 A 423 GLU PRO VAL ASP ASP VAL LEU GLU ALA LEU GLY GLY GLU SEQRES 8 A 423 LYS ALA TYR LEU PRO ALA VAL TRP ARG THR THR ARG LEU SEQRES 9 A 423 GLU GLY ALA ARG GLN ALA THR ALA VAL PRO TRP PHE SER SEQRES 10 A 423 ALA LEU ARG ALA PHE TYR TYR ARG THR ASP ALA LEU LYS SEQRES 11 A 423 ALA ALA GLY VAL ASN PRO ALA GLU MET PHE ALA SER TRP SEQRES 12 A 423 GLN GLY PHE GLU ALA GLY LEU ALA ARG LEU LYS ALA SER SEQRES 13 A 423 SER PHE ARG ASP PRO GLU THR LYS ALA PRO LEU ALA PRO SEQRES 14 A 423 LEU CYS THR PRO GLY LYS ASN SER TRP ASP VAL LEU HIS SEQRES 15 A 423 ASN ALA ALA PRO TRP ILE TRP GLY ALA GLY GLY GLU ILE SEQRES 16 A 423 VAL ARG GLN ALA GLY GLY ARG TRP GLN SER ALA LEU ASN SEQRES 17 A 423 SER PRO GLU SER LEU GLU GLY LEU TYR PHE PHE LEU SER SEQRES 18 A 423 LEU ALA GLN LYS GLY TYR VAL PRO ALA GLU SER LEU GLU SEQRES 19 A 423 LYS ASN THR ALA GLN ILE GLU ALA ASP PHE GLN ALA GLY SEQRES 20 A 423 LYS CYS ALA VAL PHE ALA SER GLY PRO TRP MET ILE GLN SEQRES 21 A 423 ARG ALA GLN VAL PRO GLU ALA LYS GLY GLY PHE ALA GLU SEQRES 22 A 423 ARG THR ALA ALA LYS ASN LEU GLY VAL ALA PRO TYR PRO SEQRES 23 A 423 ALA GLY PRO LYS GLY ARG TYR THR PHE PHE GLY GLY SER SEQRES 24 A 423 ASN LEU ALA LEU PHE ASN PHE SER LYS ASN LYS PRO LEU SEQRES 25 A 423 ALA LYS GLU LEU LEU LYS TYR LEU GLY GLY PRO GLU ALA SEQRES 26 A 423 GLN VAL ARG TYR ALA GLN MET THR GLY MET LEU PRO ALA SEQRES 27 A 423 LEU ARG SER ALA TRP SER ASP PRO SER PHE GLN GLN ASN SEQRES 28 A 423 PRO LEU LEU ARG THR PHE ILE GLN ALA ALA GLN PHE GLY SEQRES 29 A 423 ARG THR TYR PRO SER LEU ALA GLY TRP GLY GLY VAL GLU SEQRES 30 A 423 ASN LEU ALA VAL GLN HIS LEU GLY MET ALA TRP ASP LEU SEQRES 31 A 423 VAL ALA GLN GLY ARG LEU THR ARG GLU ALA LEU LYS ASP SEQRES 32 A 423 LEU MET ASP LYS ALA SER ALA ALA ILE ASN GLN ALA LEU SEQRES 33 A 423 ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 423 MET GLN LYS THR LEU GLU VAL TRP ILE MET PRO ASN SER SEQRES 2 B 423 PRO GLN PRO ALA GLU ASP PHE LYS ALA LEU VAL ALA PRO SEQRES 3 B 423 PHE GLU LYS ALA HIS GLY VAL GLU VAL LYS VAL THR VAL SEQRES 4 B 423 LEU ASP TRP GLY VAL ALA TRP THR LYS ILE THR THR ALA SEQRES 5 B 423 ALA THR SER GLY VAL GLY PRO ASP LEU THR GLN LEU GLY SEQRES 6 B 423 THR THR TRP VAL GLY ALA ILE SER ALA MET GLY VAL LEU SEQRES 7 B 423 GLU PRO VAL ASP ASP VAL LEU GLU ALA LEU GLY GLY GLU SEQRES 8 B 423 LYS ALA TYR LEU PRO ALA VAL TRP ARG THR THR ARG LEU SEQRES 9 B 423 GLU GLY ALA ARG GLN ALA THR ALA VAL PRO TRP PHE SER SEQRES 10 B 423 ALA LEU ARG ALA PHE TYR TYR ARG THR ASP ALA LEU LYS SEQRES 11 B 423 ALA ALA GLY VAL ASN PRO ALA GLU MET PHE ALA SER TRP SEQRES 12 B 423 GLN GLY PHE GLU ALA GLY LEU ALA ARG LEU LYS ALA SER SEQRES 13 B 423 SER PHE ARG ASP PRO GLU THR LYS ALA PRO LEU ALA PRO SEQRES 14 B 423 LEU CYS THR PRO GLY LYS ASN SER TRP ASP VAL LEU HIS SEQRES 15 B 423 ASN ALA ALA PRO TRP ILE TRP GLY ALA GLY GLY GLU ILE SEQRES 16 B 423 VAL ARG GLN ALA GLY GLY ARG TRP GLN SER ALA LEU ASN SEQRES 17 B 423 SER PRO GLU SER LEU GLU GLY LEU TYR PHE PHE LEU SER SEQRES 18 B 423 LEU ALA GLN LYS GLY TYR VAL PRO ALA GLU SER LEU GLU SEQRES 19 B 423 LYS ASN THR ALA GLN ILE GLU ALA ASP PHE GLN ALA GLY SEQRES 20 B 423 LYS CYS ALA VAL PHE ALA SER GLY PRO TRP MET ILE GLN SEQRES 21 B 423 ARG ALA GLN VAL PRO GLU ALA LYS GLY GLY PHE ALA GLU SEQRES 22 B 423 ARG THR ALA ALA LYS ASN LEU GLY VAL ALA PRO TYR PRO SEQRES 23 B 423 ALA GLY PRO LYS GLY ARG TYR THR PHE PHE GLY GLY SER SEQRES 24 B 423 ASN LEU ALA LEU PHE ASN PHE SER LYS ASN LYS PRO LEU SEQRES 25 B 423 ALA LYS GLU LEU LEU LYS TYR LEU GLY GLY PRO GLU ALA SEQRES 26 B 423 GLN VAL ARG TYR ALA GLN MET THR GLY MET LEU PRO ALA SEQRES 27 B 423 LEU ARG SER ALA TRP SER ASP PRO SER PHE GLN GLN ASN SEQRES 28 B 423 PRO LEU LEU ARG THR PHE ILE GLN ALA ALA GLN PHE GLY SEQRES 29 B 423 ARG THR TYR PRO SER LEU ALA GLY TRP GLY GLY VAL GLU SEQRES 30 B 423 ASN LEU ALA VAL GLN HIS LEU GLY MET ALA TRP ASP LEU SEQRES 31 B 423 VAL ALA GLN GLY ARG LEU THR ARG GLU ALA LEU LYS ASP SEQRES 32 B 423 LEU MET ASP LYS ALA SER ALA ALA ILE ASN GLN ALA LEU SEQRES 33 B 423 ARG HIS HIS HIS HIS HIS HIS HET CL A 501 1 HET SO2 A 502 3 HET SO2 A 503 3 HET SO3 A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET PGE A 507 10 HET CL B 501 1 HET CL B 502 1 HET SO2 B 503 3 HET PGE B 504 10 HET PGE B 505 10 HETNAM CL CHLORIDE ION HETNAM SO2 SULFUR DIOXIDE HETNAM SO3 SULFITE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 3(CL 1-) FORMUL 4 SO2 3(O2 S) FORMUL 6 SO3 O3 S 2- FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 PGE 3(C6 H14 O4) FORMUL 15 HOH *611(H2 O) HELIX 1 AA1 GLN A 14 GLY A 31 1 18 HELIX 2 AA2 ASP A 40 GLY A 55 1 16 HELIX 3 AA3 TRP A 67 MET A 74 1 8 HELIX 4 AA4 VAL A 80 LEU A 87 1 8 HELIX 5 AA5 GLY A 88 TYR A 93 5 6 HELIX 6 AA6 LEU A 94 ARG A 99 1 6 HELIX 7 AA7 THR A 100 ARG A 102 5 3 HELIX 8 AA8 THR A 125 ALA A 131 1 7 HELIX 9 AA9 ASN A 134 PHE A 139 1 6 HELIX 10 AB1 SER A 141 SER A 155 1 15 HELIX 11 AB2 ASP A 178 ALA A 190 1 13 HELIX 12 AB3 SER A 208 LYS A 224 1 17 HELIX 13 AB4 PRO A 228 LYS A 234 5 7 HELIX 14 AB5 ASN A 235 ALA A 245 1 11 HELIX 15 AB6 PRO A 255 ALA A 261 1 7 HELIX 16 AB7 GLN A 262 VAL A 263 5 2 HELIX 17 AB8 PRO A 264 GLY A 268 5 5 HELIX 18 AB9 ARG A 273 LYS A 277 5 5 HELIX 19 AC1 ASN A 308 GLY A 321 1 14 HELIX 20 AC2 GLY A 321 GLY A 333 1 13 HELIX 21 AC3 LEU A 338 SER A 343 5 6 HELIX 22 AC4 ASP A 344 GLN A 349 1 6 HELIX 23 AC5 ASN A 350 GLN A 361 1 12 HELIX 24 AC6 GLY A 371 GLN A 392 1 22 HELIX 25 AC7 THR A 396 ARG A 416 1 21 HELIX 26 AC8 GLN B 14 GLY B 31 1 18 HELIX 27 AC9 ASP B 40 GLY B 55 1 16 HELIX 28 AD1 TRP B 67 MET B 74 1 8 HELIX 29 AD2 VAL B 80 GLY B 88 1 9 HELIX 30 AD3 GLY B 89 TYR B 93 5 5 HELIX 31 AD4 LEU B 94 THR B 100 1 7 HELIX 32 AD5 THR B 125 ALA B 131 1 7 HELIX 33 AD6 ASN B 134 PHE B 139 1 6 HELIX 34 AD7 SER B 141 SER B 155 1 15 HELIX 35 AD8 ASP B 178 ALA B 190 1 13 HELIX 36 AD9 SER B 208 LYS B 224 1 17 HELIX 37 AE1 PRO B 228 LYS B 234 5 7 HELIX 38 AE2 ASN B 235 ALA B 245 1 11 HELIX 39 AE3 PRO B 255 ALA B 261 1 7 HELIX 40 AE4 GLN B 262 VAL B 263 5 2 HELIX 41 AE5 PRO B 264 GLY B 268 5 5 HELIX 42 AE6 ARG B 273 LYS B 277 5 5 HELIX 43 AE7 ASN B 308 GLY B 321 1 14 HELIX 44 AE8 GLY B 321 GLY B 333 1 13 HELIX 45 AE9 LEU B 338 SER B 343 5 6 HELIX 46 AF1 ASP B 344 GLN B 349 1 6 HELIX 47 AF2 ASN B 350 GLN B 361 1 12 HELIX 48 AF3 GLY B 371 GLN B 392 1 22 HELIX 49 AF4 THR B 396 ARG B 416 1 21 SHEET 1 AA1 6 GLU A 33 VAL A 38 0 SHEET 2 AA1 6 THR A 3 ILE A 8 1 N LEU A 4 O LYS A 35 SHEET 3 AA1 6 LEU A 60 GLY A 64 1 O GLN A 62 N TRP A 7 SHEET 4 AA1 6 THR A 293 LEU A 302 -1 O ASN A 299 N LEU A 63 SHEET 5 AA1 6 VAL A 112 LEU A 118 -1 N ALA A 117 O GLY A 296 SHEET 6 AA1 6 LEU A 335 PRO A 336 -1 O LEU A 335 N SER A 116 SHEET 1 AA2 5 GLU A 33 VAL A 38 0 SHEET 2 AA2 5 THR A 3 ILE A 8 1 N LEU A 4 O LYS A 35 SHEET 3 AA2 5 LEU A 60 GLY A 64 1 O GLN A 62 N TRP A 7 SHEET 4 AA2 5 THR A 293 LEU A 302 -1 O ASN A 299 N LEU A 63 SHEET 5 AA2 5 GLY A 363 ARG A 364 1 O ARG A 364 N THR A 293 SHEET 1 AA3 4 ALA A 167 LEU A 169 0 SHEET 2 AA3 4 CYS A 248 SER A 253 1 O ALA A 249 N ALA A 167 SHEET 3 AA3 4 ALA A 120 ARG A 124 -1 N TYR A 122 O PHE A 251 SHEET 4 AA3 4 LEU A 279 ALA A 282 -1 O GLY A 280 N TYR A 123 SHEET 1 AA4 2 VAL A 195 ALA A 198 0 SHEET 2 AA4 2 ARG A 201 SER A 204 -1 O GLN A 203 N ARG A 196 SHEET 1 AA5 6 GLU B 33 VAL B 38 0 SHEET 2 AA5 6 THR B 3 ILE B 8 1 N LEU B 4 O LYS B 35 SHEET 3 AA5 6 LEU B 60 GLY B 64 1 O GLN B 62 N TRP B 7 SHEET 4 AA5 6 THR B 293 LEU B 302 -1 O ASN B 299 N LEU B 63 SHEET 5 AA5 6 VAL B 112 LEU B 118 -1 N ALA B 117 O GLY B 296 SHEET 6 AA5 6 LEU B 335 PRO B 336 -1 O LEU B 335 N SER B 116 SHEET 1 AA6 5 GLU B 33 VAL B 38 0 SHEET 2 AA6 5 THR B 3 ILE B 8 1 N LEU B 4 O LYS B 35 SHEET 3 AA6 5 LEU B 60 GLY B 64 1 O GLN B 62 N TRP B 7 SHEET 4 AA6 5 THR B 293 LEU B 302 -1 O ASN B 299 N LEU B 63 SHEET 5 AA6 5 GLY B 363 ARG B 364 1 O ARG B 364 N THR B 293 SHEET 1 AA7 4 ALA B 167 LEU B 169 0 SHEET 2 AA7 4 CYS B 248 SER B 253 1 O ALA B 249 N ALA B 167 SHEET 3 AA7 4 ALA B 120 ARG B 124 -1 N TYR B 122 O PHE B 251 SHEET 4 AA7 4 LEU B 279 ALA B 282 -1 O ALA B 282 N PHE B 121 SHEET 1 AA8 2 VAL B 195 ALA B 198 0 SHEET 2 AA8 2 ARG B 201 SER B 204 -1 O GLN B 203 N ARG B 196 SSBOND 1 CYS A 170 CYS A 248 1555 1555 2.05 SSBOND 2 CYS B 170 CYS B 248 1555 1555 2.12 SITE 1 AC1 3 TRP A 188 ILE A 194 HOH A 714 SITE 1 AC2 2 TYR A 216 LYS A 224 SITE 1 AC3 4 THR A 396 ARG A 397 GLU A 398 HOH A 603 SITE 1 AC4 3 GLN A 349 PRO A 351 ARG A 354 SITE 1 AC5 4 GLN A 361 PHE A 362 HOH A 672 GLN B 361 SITE 1 AC6 3 ARG A 354 GLN A 358 HOH A 770 SITE 1 AC7 2 TRP A 177 HOH A 761 SITE 1 AC8 3 TRP B 188 ILE B 194 HOH B 732 SITE 1 AC9 3 ARG B 99 THR B 365 HOH B 752 SITE 1 AD1 3 LYS B 224 ARG B 397 HOH B 807 SITE 1 AD2 1 TRP B 177 SITE 1 AD3 7 GLY B 64 THR B 65 THR B 66 TRP B 67 SITE 2 AD3 7 HIS B 181 GLY B 296 GLY B 297 CRYST1 57.400 100.960 66.520 90.00 104.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017422 0.000000 0.004538 0.00000 SCALE2 0.000000 0.009905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015535 0.00000