HEADER OXIDOREDUCTASE 25-MAY-20 7C7F TITLE CRYSTAL STRUCTURES OF AKR1C3 BINARY COMPLEX WITH NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDO-KETO REDUCTASE FAMILY 1 MEMBER C3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE; COMPND 5 EC: 1.3.1.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKR1C3, DDH1, HSD17B5, KIAA0119, PGFS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CANCER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.IRIE,N.TOYOOKA,S.ENDO REVDAT 3 29-NOV-23 7C7F 1 REMARK REVDAT 2 07-OCT-20 7C7F 1 JRNL REVDAT 1 23-SEP-20 7C7F 0 JRNL AUTH S.ENDO,H.OGURI,J.SEGAWA,M.KAWAI,D.HU,S.XIA,T.OKADA,K.IRIE, JRNL AUTH 2 S.FUJII,H.GOUDA,K.IGUCHI,T.MATSUKAWA,N.FUJIMOTO,T.NAKAYAMA, JRNL AUTH 3 N.TOYOOKA,T.MATSUNAGA,A.IKARI JRNL TITL DEVELOPMENT OF NOVEL AKR1C3 INHIBITORS AS NEW POTENTIAL JRNL TITL 2 TREATMENT FOR CASTRATION-RESISTANT PROSTATE CANCER. JRNL REF J.MED.CHEM. V. 63 10396 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32847363 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00939 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 62178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2500 - 4.6900 0.96 2802 158 0.1654 0.1939 REMARK 3 2 4.6900 - 3.7200 0.94 2751 142 0.1640 0.2063 REMARK 3 3 3.7200 - 3.2500 0.93 2724 134 0.1868 0.2220 REMARK 3 4 3.2500 - 2.9500 0.94 2787 144 0.2105 0.2795 REMARK 3 5 2.9500 - 2.7400 0.95 2804 149 0.2260 0.2683 REMARK 3 6 2.7400 - 2.5800 0.97 2860 148 0.2395 0.2895 REMARK 3 7 2.5800 - 2.4500 0.96 2838 144 0.2456 0.3156 REMARK 3 8 2.4500 - 2.3500 0.97 2830 148 0.2555 0.2968 REMARK 3 9 2.3500 - 2.2500 0.97 2865 136 0.2601 0.3093 REMARK 3 10 2.2500 - 2.1800 0.97 2870 153 0.2767 0.3683 REMARK 3 11 2.1800 - 2.1100 0.97 2850 152 0.2703 0.3146 REMARK 3 12 2.1100 - 2.0500 0.97 2876 145 0.2766 0.3274 REMARK 3 13 2.0500 - 1.9900 0.97 2821 138 0.2853 0.3540 REMARK 3 14 1.9900 - 1.9500 0.96 2867 135 0.2961 0.3446 REMARK 3 15 1.9500 - 1.9000 0.96 2799 144 0.2986 0.3402 REMARK 3 16 1.9000 - 1.8600 0.96 2890 128 0.3059 0.4118 REMARK 3 17 1.8600 - 1.8200 0.96 2818 114 0.3013 0.3200 REMARK 3 18 1.8200 - 1.7900 0.96 2841 143 0.3086 0.3312 REMARK 3 19 1.7900 - 1.7600 0.96 2813 125 0.3157 0.3778 REMARK 3 20 1.7600 - 1.7300 0.95 2780 143 0.3231 0.3158 REMARK 3 21 1.7300 - 1.7000 0.96 2855 155 0.3470 0.3678 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.279 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5368 REMARK 3 ANGLE : 1.185 7274 REMARK 3 CHIRALITY : 0.074 788 REMARK 3 PLANARITY : 0.007 928 REMARK 3 DIHEDRAL : 18.670 2036 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300017131. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62319 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06828 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61670 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3R43 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-30% (W/V) POLYETHYLENE GLYCOL 3350 REMARK 280 (PEG3350), 200 MM SODIUM ACETATE AND 100 MM CACODYLATE, PH 6.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 321 O HOH B 501 1.30 REMARK 500 N TYR A 184 O HOH A 501 1.79 REMARK 500 O HOH B 617 O HOH B 704 1.83 REMARK 500 O HOH B 584 O HOH B 639 1.86 REMARK 500 OE2 GLU B 174 O HOH B 502 1.92 REMARK 500 OE1 GLU B 58 O HOH B 503 1.92 REMARK 500 SG CYS A 206 O HOH A 626 1.92 REMARK 500 O HOH B 606 O HOH B 698 1.94 REMARK 500 OG SER B 200 O HOH B 504 1.97 REMARK 500 O HOH B 509 O HOH B 695 1.97 REMARK 500 N SER A 129 O HOH A 502 1.97 REMARK 500 NH2 ARG B 278 O HOH B 505 1.98 REMARK 500 O HOH B 621 O HOH B 682 1.98 REMARK 500 O ALA B 295 O HOH B 506 2.00 REMARK 500 O HOH B 583 O HOH B 613 2.03 REMARK 500 O HOH A 557 O HOH A 655 2.04 REMARK 500 O PRO A 315 O HOH A 503 2.05 REMARK 500 NH1 ARG A 96 O HOH A 504 2.06 REMARK 500 O PRO A 195 O HOH A 505 2.07 REMARK 500 O HOH A 608 O HOH A 696 2.08 REMARK 500 N LEU B 202 O HOH B 507 2.10 REMARK 500 O HOH B 552 O HOH B 709 2.10 REMARK 500 O HOH A 579 O HOH A 693 2.11 REMARK 500 O ALA B 295 O HOH B 508 2.11 REMARK 500 O ASP A 140 O HOH A 506 2.12 REMARK 500 O GLU B 291 O HOH B 509 2.12 REMARK 500 OE1 GLU B 285 O HOH B 510 2.13 REMARK 500 O HOH A 512 O HOH A 714 2.13 REMARK 500 OE1 GLU A 174 O HOH A 507 2.13 REMARK 500 O ALA B 253 O HOH B 511 2.14 REMARK 500 O HOH A 504 O HOH A 723 2.14 REMARK 500 OD1 ASN B 302 O HOH B 512 2.15 REMARK 500 OG SER A 320 O ASP B 321 2.15 REMARK 500 NZ LYS B 155 O HOH B 513 2.16 REMARK 500 O HOH A 586 O HOH A 728 2.16 REMARK 500 OE1 GLN B 262 O HOH B 514 2.16 REMARK 500 O HOH B 624 O HOH B 712 2.17 REMARK 500 O HOH A 526 O HOH A 596 2.17 REMARK 500 O HOH B 713 O HOH B 725 2.17 REMARK 500 O HOH A 672 O HOH A 709 2.18 REMARK 500 O HOH A 506 O HOH A 596 2.18 REMARK 500 N ASN B 11 O HOH B 515 2.18 REMARK 500 NZ LYS A 153 O HOH A 508 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 530 O HOH B 619 1646 1.90 REMARK 500 O HOH A 510 O HOH B 687 1646 2.02 REMARK 500 O ASP B 132 O HOH B 502 1455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 221 CB - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 SER B 221 CB - CA - C ANGL. DEV. = 21.2 DEGREES REMARK 500 LEU B 257 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 221 158.66 84.76 REMARK 500 ARG A 250 -161.44 -127.46 REMARK 500 ASN B 57 10.39 -141.52 REMARK 500 SER B 221 172.66 83.81 REMARK 500 ARG B 250 -162.19 -127.88 REMARK 500 TYR B 319 46.55 -94.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 746 DISTANCE = 6.54 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 404 DBREF 7C7F A 1 323 UNP P42330 AK1C3_HUMAN 1 323 DBREF 7C7F B 1 323 UNP P42330 AK1C3_HUMAN 1 323 SEQADV 7C7F GLY A -1 UNP P42330 EXPRESSION TAG SEQADV 7C7F SER A 0 UNP P42330 EXPRESSION TAG SEQADV 7C7F GLY B -1 UNP P42330 EXPRESSION TAG SEQADV 7C7F SER B 0 UNP P42330 EXPRESSION TAG SEQRES 1 A 325 GLY SER MET ASP SER LYS HIS GLN CYS VAL LYS LEU ASN SEQRES 2 A 325 ASP GLY HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR SEQRES 3 A 325 ALA PRO PRO GLU VAL PRO ARG SER LYS ALA LEU GLU VAL SEQRES 4 A 325 THR LYS LEU ALA ILE GLU ALA GLY PHE ARG HIS ILE ASP SEQRES 5 A 325 SER ALA HIS LEU TYR ASN ASN GLU GLU GLN VAL GLY LEU SEQRES 6 A 325 ALA ILE ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG SEQRES 7 A 325 GLU ASP ILE PHE TYR THR SER LYS LEU TRP SER THR PHE SEQRES 8 A 325 HIS ARG PRO GLU LEU VAL ARG PRO ALA LEU GLU ASN SER SEQRES 9 A 325 LEU LYS LYS ALA GLN LEU ASP TYR VAL ASP LEU TYR LEU SEQRES 10 A 325 ILE HIS SER PRO MET SER LEU LYS PRO GLY GLU GLU LEU SEQRES 11 A 325 SER PRO THR ASP GLU ASN GLY LYS VAL ILE PHE ASP ILE SEQRES 12 A 325 VAL ASP LEU CYS THR THR TRP GLU ALA MET GLU LYS CYS SEQRES 13 A 325 LYS ASP ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN SEQRES 14 A 325 PHE ASN ARG ARG GLN LEU GLU MET ILE LEU ASN LYS PRO SEQRES 15 A 325 GLY LEU LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS SEQRES 16 A 325 HIS PRO TYR PHE ASN ARG SER LYS LEU LEU ASP PHE CYS SEQRES 17 A 325 LYS SER LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU SEQRES 18 A 325 GLY SER GLN ARG ASP LYS ARG TRP VAL ASP PRO ASN SER SEQRES 19 A 325 PRO VAL LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA SEQRES 20 A 325 LYS LYS HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG SEQRES 21 A 325 TYR GLN LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER SEQRES 22 A 325 TYR ASN GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE SEQRES 23 A 325 GLU PHE GLN LEU THR ALA GLU ASP MET LYS ALA ILE ASP SEQRES 24 A 325 GLY LEU ASP ARG ASN LEU HIS TYR PHE ASN SER ASP SER SEQRES 25 A 325 PHE ALA SER HIS PRO ASN TYR PRO TYR SER ASP GLU TYR SEQRES 1 B 325 GLY SER MET ASP SER LYS HIS GLN CYS VAL LYS LEU ASN SEQRES 2 B 325 ASP GLY HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR SEQRES 3 B 325 ALA PRO PRO GLU VAL PRO ARG SER LYS ALA LEU GLU VAL SEQRES 4 B 325 THR LYS LEU ALA ILE GLU ALA GLY PHE ARG HIS ILE ASP SEQRES 5 B 325 SER ALA HIS LEU TYR ASN ASN GLU GLU GLN VAL GLY LEU SEQRES 6 B 325 ALA ILE ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG SEQRES 7 B 325 GLU ASP ILE PHE TYR THR SER LYS LEU TRP SER THR PHE SEQRES 8 B 325 HIS ARG PRO GLU LEU VAL ARG PRO ALA LEU GLU ASN SER SEQRES 9 B 325 LEU LYS LYS ALA GLN LEU ASP TYR VAL ASP LEU TYR LEU SEQRES 10 B 325 ILE HIS SER PRO MET SER LEU LYS PRO GLY GLU GLU LEU SEQRES 11 B 325 SER PRO THR ASP GLU ASN GLY LYS VAL ILE PHE ASP ILE SEQRES 12 B 325 VAL ASP LEU CYS THR THR TRP GLU ALA MET GLU LYS CYS SEQRES 13 B 325 LYS ASP ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN SEQRES 14 B 325 PHE ASN ARG ARG GLN LEU GLU MET ILE LEU ASN LYS PRO SEQRES 15 B 325 GLY LEU LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS SEQRES 16 B 325 HIS PRO TYR PHE ASN ARG SER LYS LEU LEU ASP PHE CYS SEQRES 17 B 325 LYS SER LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU SEQRES 18 B 325 GLY SER GLN ARG ASP LYS ARG TRP VAL ASP PRO ASN SER SEQRES 19 B 325 PRO VAL LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA SEQRES 20 B 325 LYS LYS HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG SEQRES 21 B 325 TYR GLN LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER SEQRES 22 B 325 TYR ASN GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE SEQRES 23 B 325 GLU PHE GLN LEU THR ALA GLU ASP MET LYS ALA ILE ASP SEQRES 24 B 325 GLY LEU ASP ARG ASN LEU HIS TYR PHE ASN SER ASP SER SEQRES 25 B 325 PHE ALA SER HIS PRO ASN TYR PRO TYR SER ASP GLU TYR HET NAP A 401 48 HET EDO A 402 4 HET EDO A 403 4 HET ACT A 404 4 HET NAP B 401 48 HET EDO B 402 4 HET EDO B 403 4 HET ACT B 404 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 11 HOH *471(H2 O) HELIX 1 AA1 ARG A 31 GLY A 45 1 15 HELIX 2 AA2 ALA A 52 ASN A 56 5 5 HELIX 3 AA3 ASN A 57 ASP A 71 1 15 HELIX 4 AA4 LYS A 75 ILE A 79 5 5 HELIX 5 AA5 TRP A 86 HIS A 90 5 5 HELIX 6 AA6 ARG A 91 GLN A 107 1 17 HELIX 7 AA7 ASP A 143 ALA A 157 1 15 HELIX 8 AA8 ASN A 169 ASN A 178 1 10 HELIX 9 AA9 ARG A 199 LYS A 209 1 11 HELIX 10 AB1 VAL A 234 GLU A 237 5 4 HELIX 11 AB2 ASP A 238 LYS A 249 1 12 HELIX 12 AB3 THR A 251 ARG A 263 1 13 HELIX 13 AB4 ASN A 273 VAL A 281 1 9 HELIX 14 AB5 GLN A 282 PHE A 286 5 5 HELIX 15 AB6 THR A 289 GLY A 298 1 10 HELIX 16 AB7 SER A 308 ALA A 312 5 5 HELIX 17 AB8 ARG B 31 GLY B 45 1 15 HELIX 18 AB9 ALA B 52 ASN B 56 5 5 HELIX 19 AC1 ASN B 57 ASP B 71 1 15 HELIX 20 AC2 LYS B 75 ILE B 79 5 5 HELIX 21 AC3 TRP B 86 HIS B 90 5 5 HELIX 22 AC4 ARG B 91 GLU B 93 5 3 HELIX 23 AC5 LEU B 94 GLN B 107 1 14 HELIX 24 AC6 ASP B 143 ALA B 157 1 15 HELIX 25 AC7 ASN B 169 ASN B 178 1 10 HELIX 26 AC8 HIS B 194 ASN B 198 5 5 HELIX 27 AC9 ARG B 199 LYS B 209 1 11 HELIX 28 AD1 VAL B 234 GLU B 237 5 4 HELIX 29 AD2 ASP B 238 LYS B 249 1 12 HELIX 30 AD3 THR B 251 ARG B 263 1 13 HELIX 31 AD4 ASN B 273 VAL B 281 1 9 HELIX 32 AD5 GLN B 282 PHE B 286 5 5 HELIX 33 AD6 THR B 289 GLY B 298 1 10 HELIX 34 AD7 SER B 308 ALA B 312 5 5 SHEET 1 AA1 2 CYS A 7 LYS A 9 0 SHEET 2 AA1 2 PHE A 15 PRO A 17 -1 O MET A 16 N VAL A 8 SHEET 1 AA2 9 LEU A 19 GLY A 22 0 SHEET 2 AA2 9 HIS A 48 ASP A 50 1 O HIS A 48 N PHE A 21 SHEET 3 AA2 9 PHE A 80 LEU A 85 1 O PHE A 80 N ILE A 49 SHEET 4 AA2 9 VAL A 111 ILE A 116 1 O LEU A 115 N LEU A 85 SHEET 5 AA2 9 ALA A 160 SER A 166 1 O LYS A 161 N VAL A 111 SHEET 6 AA2 9 CYS A 188 GLU A 192 1 O GLN A 190 N VAL A 165 SHEET 7 AA2 9 VAL A 212 TYR A 216 1 O VAL A 212 N ASN A 189 SHEET 8 AA2 9 VAL A 266 LYS A 270 1 O VAL A 266 N ALA A 215 SHEET 9 AA2 9 LEU A 19 GLY A 22 1 N GLY A 20 O VAL A 267 SHEET 1 AA3 2 CYS B 7 LYS B 9 0 SHEET 2 AA3 2 PHE B 15 PRO B 17 -1 O MET B 16 N VAL B 8 SHEET 1 AA4 9 LEU B 19 GLY B 22 0 SHEET 2 AA4 9 HIS B 48 ASP B 50 1 O HIS B 48 N PHE B 21 SHEET 3 AA4 9 PHE B 80 LEU B 85 1 O PHE B 80 N ILE B 49 SHEET 4 AA4 9 VAL B 111 ILE B 116 1 O LEU B 115 N LEU B 85 SHEET 5 AA4 9 ALA B 160 SER B 166 1 O LYS B 161 N VAL B 111 SHEET 6 AA4 9 CYS B 188 GLU B 192 1 O GLN B 190 N VAL B 165 SHEET 7 AA4 9 VAL B 212 TYR B 216 1 O TYR B 216 N VAL B 191 SHEET 8 AA4 9 VAL B 266 LYS B 270 1 O VAL B 266 N ALA B 215 SHEET 9 AA4 9 LEU B 19 GLY B 22 1 N GLY B 20 O VAL B 267 SITE 1 AC1 32 GLY A 22 THR A 23 TYR A 24 ASP A 50 SITE 2 AC1 32 TYR A 55 HIS A 117 SER A 166 ASN A 167 SITE 3 AC1 32 GLN A 190 TYR A 216 SER A 217 ALA A 218 SITE 4 AC1 32 LEU A 219 GLY A 220 SER A 221 GLN A 222 SITE 5 AC1 32 LEU A 236 ALA A 253 LEU A 268 ALA A 269 SITE 6 AC1 32 LYS A 270 SER A 271 TYR A 272 ARG A 276 SITE 7 AC1 32 GLN A 279 ASN A 280 ACT A 404 HOH A 511 SITE 8 AC1 32 HOH A 553 HOH A 572 HOH A 595 HOH A 633 SITE 1 AC2 5 PHE A 15 GLU A 77 ILE A 79 PHE A 80 SITE 2 AC2 5 HOH A 589 SITE 1 AC3 10 HIS A 5 GLN A 6 PRO A 17 VAL A 18 SITE 2 AC3 10 LEU A 19 GLY A 45 PHE A 46 ARG A 47 SITE 3 AC3 10 HIS A 48 PHE A 284 SITE 1 AC4 4 LEU A 54 TYR A 55 HIS A 117 NAP A 401 SITE 1 AC5 35 GLY B 22 THR B 23 TYR B 24 ASP B 50 SITE 2 AC5 35 TYR B 55 HIS B 117 SER B 166 ASN B 167 SITE 3 AC5 35 GLN B 190 TYR B 216 SER B 217 ALA B 218 SITE 4 AC5 35 LEU B 219 GLY B 220 SER B 221 GLN B 222 SITE 5 AC5 35 LEU B 236 ALA B 253 LEU B 268 ALA B 269 SITE 6 AC5 35 LYS B 270 SER B 271 TYR B 272 ARG B 276 SITE 7 AC5 35 GLN B 279 ASN B 280 PHE B 306 ACT B 404 SITE 8 AC5 35 HOH B 523 HOH B 526 HOH B 536 HOH B 550 SITE 9 AC5 35 HOH B 560 HOH B 588 HOH B 601 SITE 1 AC6 9 PHE B 15 GLU B 77 ILE B 79 PHE B 80 SITE 2 AC6 9 ASP B 112 HOH B 528 HOH B 531 HOH B 545 SITE 3 AC6 9 HOH B 570 SITE 1 AC7 8 GLN B 6 PRO B 17 VAL B 18 LEU B 19 SITE 2 AC7 8 GLY B 45 ARG B 47 HIS B 48 PHE B 284 SITE 1 AC8 4 TYR B 55 HIS B 117 NAP B 401 HOH B 526 CRYST1 39.918 52.140 76.885 77.24 86.36 77.73 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025051 -0.005447 -0.000446 0.00000 SCALE2 0.000000 0.019627 -0.004271 0.00000 SCALE3 0.000000 0.000000 0.013338 0.00000