HEADER TRANSCRIPTION/CHAPERONE 27-MAY-20 7C7X TITLE STRUCTURAL INSIGHTS INTO NUCLEOSOME REORGANIZATION BY NAP1-RELATED TITLE 2 PROTEIN 1 (NRP1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H2A.6; COMPND 3 CHAIN: C, A; COMPND 4 SYNONYM: HTA1,PROTEIN RESISTANT TO AGROBACTERIUM TRANSFORMATION 5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H2B.1; COMPND 8 CHAIN: D, B; COMPND 9 SYNONYM: HTB1; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: NAP1-RELATED PROTEIN 1; COMPND 13 CHAIN: E, F; COMPND 14 SYNONYM: HISTONE CHAPERONE NRP1, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR COMPND 15 GROUP A6,PROTEIN SET HOMOLOG 1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RAT5, H2A-1, AT5G54640, MRB17.14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 11 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 12 ORGANISM_TAXID: 3702; SOURCE 13 GENE: AT1G07790, F24B9.10; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 19 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 20 ORGANISM_TAXID: 3702; SOURCE 21 GENE: NRP1, NFA6, AT1G74560, F1M20.24; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 24 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS COMPLEX, HISTONE, PLANT PROTEIN, CHAPERONE, TRANSCRIPTION-CHAPERONE KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.LUO,W.BAIHUI REVDAT 5 29-NOV-23 7C7X 1 REMARK REVDAT 4 16-DEC-20 7C7X 1 JRNL REVDAT 3 02-DEC-20 7C7X 1 JRNL REVDAT 2 25-NOV-20 7C7X 1 JRNL REVDAT 1 11-NOV-20 7C7X 0 JRNL AUTH Q.LUO,B.WANG,Z.WU,W.JIANG,Y.WANG,K.DU,N.ZHOU,L.ZHENG,J.GAN, JRNL AUTH 2 W.H.SHEN,J.MA,A.DONG JRNL TITL NAP1-RELATED PROTEIN 1 (NRP1) HAS MULTIPLE INTERACTION MODES JRNL TITL 2 FOR CHAPERONING HISTONES H2A-H2B. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 30391 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33199628 JRNL DOI 10.1073/PNAS.2011089117 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 3 NUMBER OF REFLECTIONS : 20062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1042 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 496 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 29.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5454 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.42000 REMARK 3 B22 (A**2) : 2.82000 REMARK 3 B33 (A**2) : -1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.442 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.338 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.801 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.850 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5573 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5354 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7515 ; 1.540 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12436 ; 1.258 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 671 ; 7.963 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;39.475 ;23.613 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1019 ;21.388 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;22.414 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 748 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6040 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1112 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7C7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300017152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24251 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5DAY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M NACL, 0.1 M SODIUM CACODYLATE, 30% REMARK 280 (V/V) PEG 600, 10% (V/V) GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.35500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.13750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.19800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.13750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.35500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.19800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 12 REMARK 465 LYS C 13 REMARK 465 ALA C 14 REMARK 465 THR C 15 REMARK 465 SER C 16 REMARK 465 ARG C 17 REMARK 465 SER C 18 REMARK 465 SER C 19 REMARK 465 LYS C 20 REMARK 465 ALA C 21 REMARK 465 ALA C 103 REMARK 465 ASN C 104 REMARK 465 LYS D 51 REMARK 465 LYS D 52 REMARK 465 ARG D 53 REMARK 465 SER D 54 REMARK 465 LYS D 55 REMARK 465 LYS D 56 REMARK 465 ASN D 57 REMARK 465 SER D 148 REMARK 465 LEU E 145 REMARK 465 GLU E 146 REMARK 465 GLU E 147 REMARK 465 LEU E 165 REMARK 465 PRO E 166 REMARK 465 ASN E 167 REMARK 465 GLY E 168 REMARK 465 VAL E 169 REMARK 465 ASN E 170 REMARK 465 HIS E 171 REMARK 465 ASP E 172 REMARK 465 ASP E 173 REMARK 465 LYS E 174 REMARK 465 LYS E 175 REMARK 465 GLY E 176 REMARK 465 ASN E 177 REMARK 465 LYS E 178 REMARK 465 ARG E 179 REMARK 465 ALA E 180 REMARK 465 LEU E 181 REMARK 465 PRO E 182 REMARK 465 GLU E 183 REMARK 465 GLU E 184 REMARK 465 GLN E 194 REMARK 465 HIS E 195 REMARK 465 LYS E 196 REMARK 465 GLU E 197 REMARK 465 ASP E 198 REMARK 465 ALA E 199 REMARK 465 GLY E 200 REMARK 465 ASP E 201 REMARK 465 GLU E 202 REMARK 465 ILE E 203 REMARK 465 ASN E 225 REMARK 465 ASP E 226 REMARK 465 ALA E 227 REMARK 465 ASP E 228 REMARK 465 GLU E 229 REMARK 465 GLU E 230 REMARK 465 ASP E 231 REMARK 465 PHE E 232 REMARK 465 ASP E 233 REMARK 465 GLY E 234 REMARK 465 ASP E 235 REMARK 465 ASP E 236 REMARK 465 ASP E 237 REMARK 465 GLY E 238 REMARK 465 ASP E 239 REMARK 465 GLU E 240 REMARK 465 GLU E 241 REMARK 465 GLY E 242 REMARK 465 GLU E 243 REMARK 465 GLU E 244 REMARK 465 ASP E 245 REMARK 465 ASP E 246 REMARK 465 ASP E 247 REMARK 465 ASP E 248 REMARK 465 GLU E 249 REMARK 465 GLU E 250 REMARK 465 GLU E 251 REMARK 465 GLU E 252 REMARK 465 ASP E 253 REMARK 465 GLY E 254 REMARK 465 GLU E 255 REMARK 465 GLU E 256 REMARK 465 SER F 18 REMARK 465 ASN F 19 REMARK 465 LEU F 20 REMARK 465 GLU F 146 REMARK 465 GLY F 162 REMARK 465 LYS F 163 REMARK 465 GLY F 164 REMARK 465 LEU F 165 REMARK 465 PRO F 166 REMARK 465 ASN F 167 REMARK 465 GLY F 168 REMARK 465 VAL F 169 REMARK 465 ASN F 170 REMARK 465 HIS F 171 REMARK 465 ASP F 172 REMARK 465 ASP F 173 REMARK 465 LYS F 174 REMARK 465 LYS F 175 REMARK 465 GLY F 176 REMARK 465 ASN F 177 REMARK 465 LYS F 178 REMARK 465 ARG F 179 REMARK 465 ALA F 180 REMARK 465 LEU F 181 REMARK 465 PRO F 182 REMARK 465 GLU F 183 REMARK 465 GLU F 184 REMARK 465 SER F 185 REMARK 465 PHE F 186 REMARK 465 ASP F 192 REMARK 465 ALA F 193 REMARK 465 GLN F 194 REMARK 465 HIS F 195 REMARK 465 LYS F 196 REMARK 465 GLU F 197 REMARK 465 ASP F 198 REMARK 465 ALA F 199 REMARK 465 GLY F 200 REMARK 465 ASP F 201 REMARK 465 GLU F 202 REMARK 465 ILE F 203 REMARK 465 ASN F 225 REMARK 465 ASP F 226 REMARK 465 ALA F 227 REMARK 465 ASP F 228 REMARK 465 GLU F 229 REMARK 465 GLU F 230 REMARK 465 ASP F 231 REMARK 465 PHE F 232 REMARK 465 ASP F 233 REMARK 465 GLY F 234 REMARK 465 ASP F 235 REMARK 465 ASP F 236 REMARK 465 ASP F 237 REMARK 465 GLY F 238 REMARK 465 ASP F 239 REMARK 465 GLU F 240 REMARK 465 GLU F 241 REMARK 465 GLY F 242 REMARK 465 GLU F 243 REMARK 465 GLU F 244 REMARK 465 ASP F 245 REMARK 465 ASP F 246 REMARK 465 ASP F 247 REMARK 465 ASP F 248 REMARK 465 GLU F 249 REMARK 465 GLU F 250 REMARK 465 GLU F 251 REMARK 465 GLU F 252 REMARK 465 ASP F 253 REMARK 465 GLY F 254 REMARK 465 GLU F 255 REMARK 465 GLU F 256 REMARK 465 LYS A 12 REMARK 465 LYS A 13 REMARK 465 ALA A 14 REMARK 465 THR A 15 REMARK 465 SER A 16 REMARK 465 ARG A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 LYS A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 103 REMARK 465 ASN A 104 REMARK 465 LYS B 51 REMARK 465 LYS B 52 REMARK 465 ARG B 53 REMARK 465 SER B 54 REMARK 465 LYS B 55 REMARK 465 LYS B 56 REMARK 465 SER B 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP F 135 CG OD1 OD2 REMARK 470 HIS A 82 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE F 132 N LYS F 160 1.81 REMARK 500 O PRO F 131 CB LYS F 160 1.99 REMARK 500 O TYR C 39 OG SER D 102 2.00 REMARK 500 O SER D 147 O HOH D 301 2.05 REMARK 500 O THR B 139 OG1 THR B 143 2.07 REMARK 500 O TYR A 39 OG SER B 102 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 45 4.02 -60.59 REMARK 500 GLU C 61 -60.66 -96.03 REMARK 500 VAL C 62 2.15 -63.67 REMARK 500 ASN C 73 5.47 -68.38 REMARK 500 LYS C 74 46.81 79.73 REMARK 500 THR C 76 36.19 -144.52 REMARK 500 VAL C 87 -73.93 -70.35 REMARK 500 VAL C 100 54.63 79.37 REMARK 500 PRO D 74 -8.27 -56.33 REMARK 500 SER D 79 -161.28 -76.02 REMARK 500 ARG D 116 -58.66 -29.17 REMARK 500 LYS D 144 99.93 -63.57 REMARK 500 GLU E 36 -73.39 -64.31 REMARK 500 LYS E 58 -35.73 -39.05 REMARK 500 PHE E 80 -71.71 -54.50 REMARK 500 ASP E 93 55.92 -103.86 REMARK 500 SER E 129 141.13 -37.39 REMARK 500 ASN E 130 141.62 -179.65 REMARK 500 PHE E 132 -17.70 -145.15 REMARK 500 PHE E 190 34.71 -92.37 REMARK 500 ASP E 192 46.90 -107.03 REMARK 500 ASP E 205 96.30 -165.05 REMARK 500 ASP E 209 3.50 -65.31 REMARK 500 ASP E 214 -74.94 -121.53 REMARK 500 ASN E 218 83.30 -160.33 REMARK 500 PHE E 223 -27.26 -33.96 REMARK 500 ALA F 90 -77.47 -64.27 REMARK 500 GLU F 112 116.39 -162.40 REMARK 500 ILE F 123 76.18 -110.63 REMARK 500 SER F 129 111.03 -33.19 REMARK 500 LEU F 138 64.55 -153.21 REMARK 500 LYS F 140 79.98 -150.05 REMARK 500 THR F 150 -151.10 -118.21 REMARK 500 LYS F 151 162.36 175.13 REMARK 500 LYS F 160 -174.94 -66.98 REMARK 500 THR F 188 44.56 -89.09 REMARK 500 ASP F 214 -68.21 -106.92 REMARK 500 THR A 76 -38.50 -137.81 REMARK 500 PRO A 80 -39.64 -35.41 REMARK 500 ARG A 81 -75.52 -61.12 REMARK 500 GLU A 91 -70.90 -49.42 REMARK 500 LEU A 96 -70.60 -65.53 REMARK 500 LYS B 70 16.51 -69.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL F 301 DBREF 7C7X C 12 104 UNP Q9LD28 H2A6_ARATH 14 106 DBREF 7C7X D 51 148 UNP Q9LQQ4 H2B1_ARATH 51 148 DBREF 7C7X E 19 256 UNP Q9CA59 NRP1_ARATH 19 256 DBREF 7C7X F 19 256 UNP Q9CA59 NRP1_ARATH 19 256 DBREF 7C7X A 12 104 UNP Q9LD28 H2A6_ARATH 14 106 DBREF 7C7X B 51 148 UNP Q9LQQ4 H2B1_ARATH 51 148 SEQADV 7C7X SER E 18 UNP Q9CA59 EXPRESSION TAG SEQADV 7C7X SER F 18 UNP Q9CA59 EXPRESSION TAG SEQRES 1 C 93 LYS LYS ALA THR SER ARG SER SER LYS ALA GLY LEU GLN SEQRES 2 C 93 PHE PRO VAL GLY ARG ILE ALA ARG PHE LEU LYS ALA GLY SEQRES 3 C 93 LYS TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR SEQRES 4 C 93 LEU ALA ALA VAL LEU GLU TYR LEU ALA ALA GLU VAL LEU SEQRES 5 C 93 GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR SEQRES 6 C 93 ARG ILE VAL PRO ARG HIS ILE GLN LEU ALA VAL ARG ASN SEQRES 7 C 93 ASP GLU GLU LEU SER LYS LEU LEU GLY ASP VAL THR ILE SEQRES 8 C 93 ALA ASN SEQRES 1 D 98 LYS LYS ARG SER LYS LYS ASN VAL GLU THR TYR LYS ILE SEQRES 2 D 98 TYR ILE PHE LYS VAL LEU LYS GLN VAL HIS PRO ASP ILE SEQRES 3 D 98 GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER PHE SEQRES 4 D 98 ILE ASN ASP ILE PHE GLU LYS LEU ALA GLN GLU SER SER SEQRES 5 D 98 LYS LEU ALA ARG TYR ASN LYS LYS PRO THR ILE THR SER SEQRES 6 D 98 ARG GLU ILE GLN THR ALA VAL ARG LEU VAL LEU PRO GLY SEQRES 7 D 98 GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA SEQRES 8 D 98 VAL THR LYS PHE THR SER SER SEQRES 1 E 239 SER ASN LEU GLU GLN ILE ASP ALA GLU LEU VAL LEU SER SEQRES 2 E 239 ILE GLU LYS LEU GLN GLU ILE GLN ASP ASP LEU GLU LYS SEQRES 3 E 239 ILE ASN GLU LYS ALA SER ASP GLU VAL LEU GLU VAL GLU SEQRES 4 E 239 GLN LYS TYR ASN VAL ILE ARG LYS PRO VAL TYR ASP LYS SEQRES 5 E 239 ARG ASN GLU VAL ILE GLN SER ILE PRO GLY PHE TRP MET SEQRES 6 E 239 THR ALA PHE LEU SER HIS PRO ALA LEU GLY ASP LEU LEU SEQRES 7 E 239 THR GLU GLU ASP GLN LYS ILE PHE LYS TYR LEU ASN SER SEQRES 8 E 239 LEU GLU VAL GLU ASP ALA LYS ASP VAL LYS SER GLY TYR SEQRES 9 E 239 SER ILE THR PHE HIS PHE THR SER ASN PRO PHE PHE GLU SEQRES 10 E 239 ASP ALA LYS LEU THR LYS THR PHE THR PHE LEU GLU GLU SEQRES 11 E 239 GLY THR THR LYS ILE THR ALA THR PRO ILE LYS TRP LYS SEQRES 12 E 239 GLU GLY LYS GLY LEU PRO ASN GLY VAL ASN HIS ASP ASP SEQRES 13 E 239 LYS LYS GLY ASN LYS ARG ALA LEU PRO GLU GLU SER PHE SEQRES 14 E 239 PHE THR TRP PHE THR ASP ALA GLN HIS LYS GLU ASP ALA SEQRES 15 E 239 GLY ASP GLU ILE HIS ASP GLU VAL ALA ASP ILE ILE LYS SEQRES 16 E 239 GLU ASP LEU TRP SER ASN PRO LEU THR TYR PHE ASN ASN SEQRES 17 E 239 ASP ALA ASP GLU GLU ASP PHE ASP GLY ASP ASP ASP GLY SEQRES 18 E 239 ASP GLU GLU GLY GLU GLU ASP ASP ASP ASP GLU GLU GLU SEQRES 19 E 239 GLU ASP GLY GLU GLU SEQRES 1 F 239 SER ASN LEU GLU GLN ILE ASP ALA GLU LEU VAL LEU SER SEQRES 2 F 239 ILE GLU LYS LEU GLN GLU ILE GLN ASP ASP LEU GLU LYS SEQRES 3 F 239 ILE ASN GLU LYS ALA SER ASP GLU VAL LEU GLU VAL GLU SEQRES 4 F 239 GLN LYS TYR ASN VAL ILE ARG LYS PRO VAL TYR ASP LYS SEQRES 5 F 239 ARG ASN GLU VAL ILE GLN SER ILE PRO GLY PHE TRP MET SEQRES 6 F 239 THR ALA PHE LEU SER HIS PRO ALA LEU GLY ASP LEU LEU SEQRES 7 F 239 THR GLU GLU ASP GLN LYS ILE PHE LYS TYR LEU ASN SER SEQRES 8 F 239 LEU GLU VAL GLU ASP ALA LYS ASP VAL LYS SER GLY TYR SEQRES 9 F 239 SER ILE THR PHE HIS PHE THR SER ASN PRO PHE PHE GLU SEQRES 10 F 239 ASP ALA LYS LEU THR LYS THR PHE THR PHE LEU GLU GLU SEQRES 11 F 239 GLY THR THR LYS ILE THR ALA THR PRO ILE LYS TRP LYS SEQRES 12 F 239 GLU GLY LYS GLY LEU PRO ASN GLY VAL ASN HIS ASP ASP SEQRES 13 F 239 LYS LYS GLY ASN LYS ARG ALA LEU PRO GLU GLU SER PHE SEQRES 14 F 239 PHE THR TRP PHE THR ASP ALA GLN HIS LYS GLU ASP ALA SEQRES 15 F 239 GLY ASP GLU ILE HIS ASP GLU VAL ALA ASP ILE ILE LYS SEQRES 16 F 239 GLU ASP LEU TRP SER ASN PRO LEU THR TYR PHE ASN ASN SEQRES 17 F 239 ASP ALA ASP GLU GLU ASP PHE ASP GLY ASP ASP ASP GLY SEQRES 18 F 239 ASP GLU GLU GLY GLU GLU ASP ASP ASP ASP GLU GLU GLU SEQRES 19 F 239 GLU ASP GLY GLU GLU SEQRES 1 A 93 LYS LYS ALA THR SER ARG SER SER LYS ALA GLY LEU GLN SEQRES 2 A 93 PHE PRO VAL GLY ARG ILE ALA ARG PHE LEU LYS ALA GLY SEQRES 3 A 93 LYS TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR SEQRES 4 A 93 LEU ALA ALA VAL LEU GLU TYR LEU ALA ALA GLU VAL LEU SEQRES 5 A 93 GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR SEQRES 6 A 93 ARG ILE VAL PRO ARG HIS ILE GLN LEU ALA VAL ARG ASN SEQRES 7 A 93 ASP GLU GLU LEU SER LYS LEU LEU GLY ASP VAL THR ILE SEQRES 8 A 93 ALA ASN SEQRES 1 B 98 LYS LYS ARG SER LYS LYS ASN VAL GLU THR TYR LYS ILE SEQRES 2 B 98 TYR ILE PHE LYS VAL LEU LYS GLN VAL HIS PRO ASP ILE SEQRES 3 B 98 GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER PHE SEQRES 4 B 98 ILE ASN ASP ILE PHE GLU LYS LEU ALA GLN GLU SER SER SEQRES 5 B 98 LYS LEU ALA ARG TYR ASN LYS LYS PRO THR ILE THR SER SEQRES 6 B 98 ARG GLU ILE GLN THR ALA VAL ARG LEU VAL LEU PRO GLY SEQRES 7 B 98 GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA SEQRES 8 B 98 VAL THR LYS PHE THR SER SER HET GOL D 201 6 HET GOL D 202 6 HET GOL D 203 6 HET GOL F 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL 4(C3 H8 O3) FORMUL 11 HOH *24(H2 O) HELIX 1 AA1 PRO C 26 GLY C 37 1 12 HELIX 2 AA2 ALA C 45 LEU C 63 1 19 HELIX 3 AA3 LEU C 65 ASN C 73 1 9 HELIX 4 AA4 VAL C 79 ASP C 90 1 12 HELIX 5 AA5 ASP C 90 GLY C 98 1 9 HELIX 6 AA6 TYR D 61 HIS D 73 1 13 HELIX 7 AA7 SER D 79 ASN D 108 1 30 HELIX 8 AA8 THR D 114 LEU D 126 1 13 HELIX 9 AA9 PRO D 127 LYS D 144 1 18 HELIX 10 AB1 ASN E 19 GLN E 75 1 57 HELIX 11 AB2 GLY E 79 HIS E 88 1 10 HELIX 12 AB3 HIS E 88 ASP E 93 1 6 HELIX 13 AB4 THR E 96 PHE E 103 1 8 HELIX 14 AB5 LYS E 104 LEU E 106 5 3 HELIX 15 AB6 PHE E 186 THR E 191 5 6 HELIX 16 AB7 VAL E 207 LYS E 212 1 6 HELIX 17 AB8 GLN F 22 GLN F 75 1 54 HELIX 18 AB9 GLY F 79 HIS F 88 1 10 HELIX 19 AC1 THR F 96 PHE F 103 1 8 HELIX 20 AC2 LYS F 104 LEU F 106 5 3 HELIX 21 AC3 GLU F 206 ASP F 214 1 9 HELIX 22 AC4 PRO F 219 ASN F 224 1 6 HELIX 23 AC5 PRO A 26 GLY A 37 1 12 HELIX 24 AC6 ALA A 45 GLY A 67 1 23 HELIX 25 AC7 ASN A 68 ASN A 73 1 6 HELIX 26 AC8 VAL A 79 ASP A 90 1 12 HELIX 27 AC9 ASP A 90 GLY A 98 1 9 HELIX 28 AD1 TYR B 61 HIS B 73 1 13 HELIX 29 AD2 SER B 79 ASN B 108 1 30 HELIX 30 AD3 THR B 114 LEU B 126 1 13 HELIX 31 AD4 PRO B 127 SER B 147 1 21 SHEET 1 AA1 2 ARG C 77 ILE C 78 0 SHEET 2 AA1 2 GLY D 77 ILE D 78 1 O GLY D 77 N ILE C 78 SHEET 1 AA2 3 GLY E 120 TYR E 121 0 SHEET 2 AA2 3 LYS E 140 THR E 143 -1 O PHE E 142 N TYR E 121 SHEET 3 AA2 3 LYS E 151 ALA E 154 -1 O LYS E 151 N THR E 143 SHEET 1 AA3 2 PHE E 125 HIS E 126 0 SHEET 2 AA3 2 LYS E 137 LEU E 138 -1 O LEU E 138 N PHE E 125 SHEET 1 AA4 4 LEU F 109 ASP F 113 0 SHEET 2 AA4 4 GLY F 120 PHE F 125 -1 O THR F 124 N GLU F 110 SHEET 3 AA4 4 LYS F 140 THR F 143 -1 O PHE F 142 N TYR F 121 SHEET 4 AA4 4 ILE F 152 ALA F 154 -1 O THR F 153 N THR F 141 SHEET 1 AA5 2 ARG A 77 ILE A 78 0 SHEET 2 AA5 2 GLY B 77 ILE B 78 1 O GLY B 77 N ILE A 78 SITE 1 AC1 3 PHE D 66 VAL F 28 GLU F 32 SITE 1 AC2 5 LYS A 95 LYS C 38 TYR C 39 SER D 102 SITE 2 AC2 5 ARG D 106 SITE 1 AC3 1 TYR D 107 SITE 1 AC4 1 LYS F 151 CRYST1 66.710 128.396 140.275 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014990 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007129 0.00000