HEADER HYDROLASE 28-MAY-20 7C82 TITLE CRYSTAL STRUCTURE OF ALINE4, A SGNH-HYDROLASE FAMILY ESTERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SGNH-HYDROLASE FAMILY ESTERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALINE4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALTERERYTHROBACTER INDICUS; SOURCE 3 ORGANISM_TAXID: 374177; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ESTERASE, SGNH-HYDROLASE FAMILY, MARINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.LI REVDAT 2 29-NOV-23 7C82 1 LINK REVDAT 1 08-JUL-20 7C82 0 JRNL AUTH Z.LI,L.LI,Y.HUO,Z.CHEN,Y.ZHAO,J.HUANG,S.JIAN,Z.RONG,D.WU, JRNL AUTH 2 J.GAN,X.HU,J.LI,X.W.XU JRNL TITL STRUCTURE-GUIDED PROTEIN ENGINEERING INCREASES ENZYMATIC JRNL TITL 2 ACTIVITIES OF THE SGNH FAMILY ESTERASES. JRNL REF BIOTECHNOL BIOFUELS V. 13 107 2020 JRNL REFN ESSN 1754-6834 JRNL PMID 32549911 JRNL DOI 10.1186/S13068-020-01742-8 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 61212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.102 REMARK 3 FREE R VALUE TEST SET COUNT : 3291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4129 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06300 REMARK 3 B22 (A**2) : -0.06300 REMARK 3 B33 (A**2) : 0.12600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.030 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.015 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1596 ; 0.019 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1540 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2166 ; 2.131 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3578 ; 1.662 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 5.662 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;32.725 ;21.605 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 279 ;13.932 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.583 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 201 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1854 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 329 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 354 ; 0.272 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 74 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 798 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 128 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.073 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 821 ; 1.540 ; 1.232 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 816 ; 1.454 ; 1.218 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1037 ; 1.849 ; 1.837 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1038 ; 1.862 ; 1.842 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 775 ; 3.460 ; 1.614 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 776 ; 3.458 ; 1.616 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1129 ; 3.983 ; 2.288 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1130 ; 3.982 ; 2.290 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3136 ; 5.193 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7C82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300017158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64489 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 48.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4JGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM ACETATE, 100MM HEPES, PH REMARK 280 7.5, 50MM CADMIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.89150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.89150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.50500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.89150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.89150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.50500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.89150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.89150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.50500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.89150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.89150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.50500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 315 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 502 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS A 190 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ALA A 188 N ALA A 201 1.53 REMARK 500 CE1 HIS A 165 O HOH A 301 1.91 REMARK 500 O HOH A 453 O HOH A 499 1.91 REMARK 500 O ACT A 206 O HOH A 301 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 3 CD GLU A 3 OE1 -0.091 REMARK 500 ARG A 169 NE ARG A 169 CZ 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 106 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 169 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 -147.87 -116.73 REMARK 500 ASP A 12 -148.03 -116.73 REMARK 500 ASP A 162 -95.06 -146.57 REMARK 500 ASP A 162 -95.06 -129.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ALA A 201 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 0 N REMARK 620 2 SER A 0 OG 72.4 REMARK 620 3 GLU A 91 OE1 111.4 64.0 REMARK 620 4 GLU A 91 OE2 111.5 62.7 1.6 REMARK 620 5 GLU A 173 OE1 147.9 98.1 40.7 41.2 REMARK 620 6 GLU A 173 OE1 147.6 96.5 39.6 40.0 1.6 REMARK 620 7 GLU A 173 OE2 147.8 96.2 39.5 40.0 2.0 0.5 REMARK 620 8 GLU A 173 OE2 148.1 98.7 41.2 41.7 0.6 2.2 2.6 REMARK 620 9 HOH A 328 O 155.5 83.7 60.4 59.7 39.8 38.9 38.4 39.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 37 ND1 REMARK 620 2 ASN A 180 OD1 40.3 REMARK 620 3 ACT A 208 OXT 102.6 125.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 163 ND1 REMARK 620 2 HIS A 165 NE2 107.8 REMARK 620 3 ACT A 205 OXT 124.9 110.6 REMARK 620 4 ACT A 206 O 80.6 86.4 138.7 REMARK 620 5 ACT A 206 OXT 130.5 91.4 86.3 54.9 REMARK 620 6 HOH A 377 O 87.2 154.5 74.3 75.5 63.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7C2A RELATED DB: PDB DBREF1 7C82 A 0 190 UNP A0A4P1LYH5_9SPHN DBREF2 7C82 A A0A4P1LYH5 1 191 SEQRES 1 A 191 SER MET GLY GLU SER ARG VAL ILE LEU ALA PHE GLY ASP SEQRES 2 A 191 SER LEU PHE ALA GLY TYR GLY LEU ASP LYS GLY GLU SER SEQRES 3 A 191 TYR PRO ALA LYS LEU GLU THR ALA LEU ARG SER HIS GLY SEQRES 4 A 191 ILE ASN ALA ARG ILE ILE ASN ALA GLY VAL SER GLY ASP SEQRES 5 A 191 THR THR ALA ALA GLY LEU GLN ARG ILE LYS PHE VAL LEU SEQRES 6 A 191 ASP SER GLN PRO ASP LYS PRO GLU LEU ALA ILE VAL GLU SEQRES 7 A 191 LEU GLY GLY ASN ASP LEU LEU ARG GLY LEU SER PRO ALA SEQRES 8 A 191 GLU ALA ARG GLN ASN LEU SER GLY ILE LEU GLU GLU LEU SEQRES 9 A 191 GLN ARG ARG LYS ILE PRO ILE LEU LEU MET GLY MET ARG SEQRES 10 A 191 ALA PRO PRO ASN LEU GLY ALA LYS TYR GLN ARG GLU PHE SEQRES 11 A 191 ASP GLY ILE TYR PRO TYR LEU ALA GLU LYS TYR ASP ALA SEQRES 12 A 191 LYS LEU VAL PRO PHE PHE LEU GLU ALA VAL ALA ASP ARG SEQRES 13 A 191 PRO ASP LEU ILE GLN LYS ASP HIS VAL HIS PRO THR ALA SEQRES 14 A 191 ARG GLY VAL GLU GLU LEU VAL SER ALA THR SER ASN ALA SEQRES 15 A 191 VAL ALA LYS ALA LEU PRO ALA LYS LYS HET ALA A 201 5 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET ACT A 205 4 HET ACT A 206 4 HET ACT A 207 4 HET ACT A 208 4 HETNAM ALA ALANINE HETNAM CD CADMIUM ION HETNAM ACT ACETATE ION FORMUL 2 ALA C3 H7 N O2 FORMUL 3 CD 3(CD 2+) FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 10 HOH *221(H2 O) HELIX 1 AA1 ASP A 12 GLY A 17 1 6 HELIX 2 AA2 SER A 25 ARG A 35 1 11 HELIX 3 AA3 SER A 36 GLY A 38 5 3 HELIX 4 AA4 THR A 52 SER A 66 1 15 HELIX 5 AA5 GLY A 79 ARG A 85 1 7 HELIX 6 AA6 SER A 88 ARG A 106 1 19 HELIX 7 AA7 PRO A 118 LEU A 121 5 4 HELIX 8 AA8 GLY A 122 TYR A 140 1 19 HELIX 9 AA9 LEU A 149 ALA A 153 5 5 HELIX 10 AB1 ARG A 155 ILE A 159 5 5 HELIX 11 AB2 THR A 167 LEU A 186 1 20 SHEET 1 AA1 5 ALA A 41 GLY A 47 0 SHEET 2 AA1 5 ARG A 5 GLY A 11 1 N ALA A 9 O ILE A 44 SHEET 3 AA1 5 LEU A 73 GLU A 77 1 O ILE A 75 N LEU A 8 SHEET 4 AA1 5 ILE A 110 MET A 113 1 O MET A 113 N VAL A 76 SHEET 5 AA1 5 LYS A 143 VAL A 145 1 O LYS A 143 N LEU A 112 LINK N SER A 0 CD CD A 202 1555 1555 2.38 LINK OG SER A 0 CD CD A 202 1555 1555 2.38 LINK ND1 HIS A 37 CD CD A 204 1555 1555 2.41 LINK OE1 GLU A 91 CD CD A 202 1555 6555 2.55 LINK OE2 GLU A 91 CD CD A 202 1555 6555 2.28 LINK ND1 HIS A 163 CD CD A 203 1555 1555 2.15 LINK NE2 HIS A 165 CD CD A 203 1555 1555 2.19 LINK OE1AGLU A 173 CD CD A 202 1555 7565 2.35 LINK OE1BGLU A 173 CD CD A 202 1555 7565 2.55 LINK OE2AGLU A 173 CD CD A 202 1555 7565 2.28 LINK OE2BGLU A 173 CD CD A 202 1555 7565 2.24 LINK OD1 ASN A 180 CD CD A 204 1555 7565 2.59 LINK CD CD A 202 O HOH A 328 1555 7455 2.30 LINK CD CD A 203 OXT ACT A 205 1555 1555 2.11 LINK CD CD A 203 O ACT A 206 1555 1555 2.49 LINK CD CD A 203 OXT ACT A 206 1555 1555 2.15 LINK CD CD A 203 O HOH A 377 1555 2565 2.47 LINK CD CD A 204 OXT ACT A 208 1555 7455 2.51 SITE 1 AC1 4 ARG A 5 PRO A 187 ALA A 188 ACT A 207 SITE 1 AC2 4 SER A 0 GLU A 91 GLU A 173 HOH A 328 SITE 1 AC3 6 SER A 13 HIS A 163 HIS A 165 ACT A 205 SITE 2 AC3 6 ACT A 206 HOH A 377 SITE 1 AC4 4 HIS A 37 ASN A 180 ACT A 208 HOH A 451 SITE 1 AC5 8 SER A 13 ASN A 81 HIS A 165 CD A 203 SITE 2 AC5 8 ACT A 206 HOH A 321 HOH A 350 HOH A 377 SITE 1 AC6 8 SER A 13 TYR A 18 HIS A 163 HIS A 165 SITE 2 AC6 8 CD A 203 ACT A 205 HOH A 301 HOH A 377 SITE 1 AC7 5 ARG A 5 GLY A 38 ALA A 201 HOH A 397 SITE 2 AC7 5 HOH A 445 SITE 1 AC8 6 HIS A 37 ASN A 180 ALA A 183 CD A 204 SITE 2 AC8 6 HOH A 303 HOH A 451 CRYST1 79.783 79.783 61.010 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012534 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016391 0.00000