HEADER HYDROLASE 28-MAY-20 7C84 TITLE ESTERASE ALINE4 MUTANT, D162A COMPND MOL_ID: 1; COMPND 2 MOLECULE: SGNH-HYDROLASE FAMILY ESTERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALTERERYTHROBACTER INDICUS; SOURCE 3 ORGANISM_COMMON: ALINE4; SOURCE 4 ORGANISM_TAXID: 374177; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ESTERASE, SGNH-HYDROLASE FAMILY, MARINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.LI REVDAT 2 29-NOV-23 7C84 1 LINK REVDAT 1 08-JUL-20 7C84 0 JRNL AUTH Z.LI,L.LI,Y.HUO,Z.CHEN,Y.ZHAO,J.HUANG,S.JIAN,Z.RONG,D.WU, JRNL AUTH 2 J.GAN,X.HU,J.LI,X.W.XU JRNL TITL STRUCTURE-GUIDED PROTEIN ENGINEERING INCREASES ENZYMATIC JRNL TITL 2 ACTIVITIES OF THE SGNH FAMILY ESTERASES. JRNL REF BIOTECHNOL BIOFUELS V. 13 107 2020 JRNL REFN ESSN 1754-6834 JRNL PMID 32549911 JRNL DOI 10.1186/S13068-020-01742-8 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.114 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.152 REMARK 3 FREE R VALUE TEST SET COUNT : 1496 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2001 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.0770 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.1230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1436 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06600 REMARK 3 B22 (A**2) : 0.06600 REMARK 3 B33 (A**2) : -0.13200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.827 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1562 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1510 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2119 ; 1.911 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3508 ; 1.625 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 5.783 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;32.620 ;21.392 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;13.520 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;25.924 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 197 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1803 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 324 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 347 ; 0.243 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 66 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 792 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 117 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.085 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.184 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 802 ; 1.850 ; 1.228 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 799 ; 1.756 ; 1.220 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1014 ; 2.285 ; 1.841 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1015 ; 2.293 ; 1.844 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 760 ; 3.831 ; 1.670 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 761 ; 3.829 ; 1.670 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1105 ; 4.108 ; 2.337 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1106 ; 4.106 ; 2.337 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3072 ; 3.848 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7C84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300017159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.06881 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.552 REMARK 200 RESOLUTION RANGE LOW (A) : 48.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4JGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM ACETATE, 100MM HEPES, PH REMARK 280 7.5, 50MM CADMIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.90500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.46000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.90500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.46000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.90500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.90500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.46000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.90500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.90500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.46000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 472 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS A 190 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 439 O HOH A 479 2.10 REMARK 500 O HOH A 424 O HOH A 471 2.18 REMARK 500 O HOH A 423 O HOH A 436 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 -146.47 -115.43 REMARK 500 ASP A 12 -146.63 -115.43 REMARK 500 ALA A 162 -111.85 -128.02 REMARK 500 ALA A 162 -111.85 -138.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 487 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 488 DISTANCE = 6.58 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 0 N REMARK 620 2 SER A 0 OG 74.9 REMARK 620 3 GLU A 91 OE1 110.1 61.4 REMARK 620 4 GLU A 91 OE2 110.3 60.1 1.6 REMARK 620 5 GLU A 173 OE1 146.1 94.7 40.3 40.8 REMARK 620 6 GLU A 173 OE1 146.1 93.4 39.5 39.9 1.3 REMARK 620 7 GLU A 173 OE2 146.1 92.9 39.2 39.6 2.0 0.6 REMARK 620 8 GLU A 173 OE2 146.4 95.6 41.1 41.5 0.9 2.2 2.8 REMARK 620 9 HOH A 318 O 108.1 60.0 2.1 2.5 42.4 41.6 41.2 43.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 31 OE1 REMARK 620 2 GLU A 31 OE2 53.0 REMARK 620 3 GOL A 207 O1 132.5 80.5 REMARK 620 4 GOL A 207 O2 159.2 147.7 68.0 REMARK 620 5 HOH A 391 O 80.5 133.1 146.4 78.8 REMARK 620 6 HOH A 441 O 96.0 90.8 93.6 84.3 87.9 REMARK 620 7 HOH A 450 O 84.3 91.8 88.4 94.3 89.2 177.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 37 ND1 REMARK 620 2 ASN A 180 OD1 42.5 REMARK 620 3 ACT A 206 OXT 42.6 2.3 REMARK 620 4 HOH A 413 O 41.0 1.5 2.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 165 NE2 REMARK 620 2 ACT A 205 OXT 104.1 REMARK 620 3 HOH A 357 O 155.3 79.8 REMARK 620 4 HOH A 465 O 78.1 148.0 86.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7C2C RELATED DB: PDB DBREF1 7C84 A 0 190 UNP A0A4P1LYH5_9SPHN DBREF2 7C84 A A0A4P1LYH5 1 191 SEQADV 7C84 ALA A 162 UNP A0A4P1LYH ASP 163 ENGINEERED MUTATION SEQRES 1 A 191 SER MET GLY GLU SER ARG VAL ILE LEU ALA PHE GLY ASP SEQRES 2 A 191 SER LEU PHE ALA GLY TYR GLY LEU ASP LYS GLY GLU SER SEQRES 3 A 191 TYR PRO ALA LYS LEU GLU THR ALA LEU ARG SER HIS GLY SEQRES 4 A 191 ILE ASN ALA ARG ILE ILE ASN ALA GLY VAL SER GLY ASP SEQRES 5 A 191 THR THR ALA ALA GLY LEU GLN ARG ILE LYS PHE VAL LEU SEQRES 6 A 191 ASP SER GLN PRO ASP LYS PRO GLU LEU ALA ILE VAL GLU SEQRES 7 A 191 LEU GLY GLY ASN ASP LEU LEU ARG GLY LEU SER PRO ALA SEQRES 8 A 191 GLU ALA ARG GLN ASN LEU SER GLY ILE LEU GLU GLU LEU SEQRES 9 A 191 GLN ARG ARG LYS ILE PRO ILE LEU LEU MET GLY MET ARG SEQRES 10 A 191 ALA PRO PRO ASN LEU GLY ALA LYS TYR GLN ARG GLU PHE SEQRES 11 A 191 ASP GLY ILE TYR PRO TYR LEU ALA GLU LYS TYR ASP ALA SEQRES 12 A 191 LYS LEU VAL PRO PHE PHE LEU GLU ALA VAL ALA ASP ARG SEQRES 13 A 191 PRO ASP LEU ILE GLN LYS ALA HIS VAL HIS PRO THR ALA SEQRES 14 A 191 ARG GLY VAL GLU GLU LEU VAL SER ALA THR SER ASN ALA SEQRES 15 A 191 VAL ALA LYS ALA LEU PRO ALA LYS LYS HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET ACT A 205 4 HET ACT A 206 4 HET GOL A 207 6 HETNAM CD CADMIUM ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CD 4(CD 2+) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *188(H2 O) HELIX 1 AA1 ASP A 12 GLY A 17 1 6 HELIX 2 AA2 SER A 25 ARG A 35 1 11 HELIX 3 AA3 SER A 36 GLY A 38 5 3 HELIX 4 AA4 THR A 52 SER A 66 1 15 HELIX 5 AA5 GLY A 79 ARG A 85 1 7 HELIX 6 AA6 SER A 88 ARG A 106 1 19 HELIX 7 AA7 PRO A 118 LEU A 121 5 4 HELIX 8 AA8 GLY A 122 TYR A 140 1 19 HELIX 9 AA9 LEU A 149 ALA A 153 5 5 HELIX 10 AB1 ARG A 155 ILE A 159 5 5 HELIX 11 AB2 THR A 167 LEU A 186 1 20 SHEET 1 AA1 5 ALA A 41 GLY A 47 0 SHEET 2 AA1 5 ARG A 5 GLY A 11 1 N ALA A 9 O ILE A 44 SHEET 3 AA1 5 LEU A 73 GLU A 77 1 O ILE A 75 N LEU A 8 SHEET 4 AA1 5 ILE A 110 MET A 113 1 O MET A 113 N VAL A 76 SHEET 5 AA1 5 LYS A 143 VAL A 145 1 O LYS A 143 N LEU A 112 LINK N SER A 0 CD CD A 201 1555 6455 2.34 LINK OG SER A 0 CD CD A 201 1555 6455 2.29 LINK OE1 GLU A 31 CD CD A 202 1555 1555 2.50 LINK OE2 GLU A 31 CD CD A 202 1555 1555 2.39 LINK ND1 HIS A 37 CD CD A 204 1555 7455 2.50 LINK OE1 GLU A 91 CD CD A 201 1555 1555 2.54 LINK OE2 GLU A 91 CD CD A 201 1555 1555 2.22 LINK NE2 HIS A 165 CD CD A 203 1555 1555 2.26 LINK OE1AGLU A 173 CD CD A 201 1555 3554 2.31 LINK OE1BGLU A 173 CD CD A 201 1555 3554 2.43 LINK OE2AGLU A 173 CD CD A 201 1555 3554 2.43 LINK OE2BGLU A 173 CD CD A 201 1555 3554 2.33 LINK OD1 ASN A 180 CD CD A 204 1555 1555 2.53 LINK CD CD A 201 O HOH A 318 1555 4455 2.37 LINK CD CD A 202 O1 GOL A 207 1555 1555 2.35 LINK CD CD A 202 O2 GOL A 207 1555 1555 2.42 LINK CD CD A 202 O HOH A 391 1555 1555 2.35 LINK CD CD A 202 O HOH A 441 1555 1555 2.23 LINK CD CD A 202 O HOH A 450 1555 1555 2.30 LINK CD CD A 203 OXT ACT A 205 1555 2565 2.08 LINK CD CD A 203 O HOH A 357 1555 2565 2.34 LINK CD CD A 203 O HOH A 465 1555 2565 1.97 LINK CD CD A 204 OXT ACT A 206 1555 1555 2.13 LINK CD CD A 204 O HOH A 413 1555 1555 2.10 SITE 1 AC1 4 SER A 0 GLU A 91 GLU A 173 HOH A 318 SITE 1 AC2 5 GLU A 31 GOL A 207 HOH A 391 HOH A 441 SITE 2 AC2 5 HOH A 450 SITE 1 AC3 6 SER A 13 HIS A 163 HIS A 165 ACT A 205 SITE 2 AC3 6 HOH A 357 HOH A 465 SITE 1 AC4 5 HIS A 37 ASN A 180 ACT A 206 HOH A 375 SITE 2 AC4 5 HOH A 413 SITE 1 AC5 8 ASP A 12 SER A 13 HIS A 163 VAL A 164 SITE 2 AC5 8 HIS A 165 CD A 203 HOH A 325 HOH A 357 SITE 1 AC6 5 ASN A 180 ALA A 183 CD A 204 HOH A 375 SITE 2 AC6 5 HOH A 413 SITE 1 AC7 9 GLU A 31 ARG A 93 TYR A 135 CD A 202 SITE 2 AC7 9 HOH A 314 HOH A 342 HOH A 364 HOH A 391 SITE 3 AC7 9 HOH A 392 CRYST1 79.810 79.810 60.920 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016415 0.00000