HEADER VIRAL PROTEIN/PROTEIN BINDING 01-JUN-20 7C8J TITLE STRUCTURAL BASIS FOR CROSS-SPECIES RECOGNITION OF COVID-19 VIRUS SPIKE TITLE 2 RECEPTOR BINDING DOMAIN TO BAT ACE2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANGIOTENSIN-CONVERTING ENZYME; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SARS-COV-2 RECEPTOR BINDING DOMAIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 333-527; COMPND 10 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHINOLOPHUS MACROTIS; SOURCE 3 ORGANISM_COMMON: BIG-EARED HORSESHOE BAT; SOURCE 4 ORGANISM_TAXID: 196889; SOURCE 5 GENE: ACE2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 10 2; SOURCE 11 ORGANISM_COMMON: 2019-NCOV; SOURCE 12 ORGANISM_TAXID: 2697049; SOURCE 13 GENE: S, 2; SOURCE 14 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 266783 KEYWDS COVID-19, RECEPTOR BINDING DOMAIN (RBD), RHINOLOPHUS MACROTIS, BATS, KEYWDS 2 ACE2, VIRAL PROTEIN-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.F.LIU,J.WANG,S.G.TAN,S.NIU,L.L.WU,Y.F.ZHANG,X.Q.PAN,Y.M.MENG, AUTHOR 2 Q.CHEN,Q.H.WANG,H.W.WANG,J.X.QI,G.F.GAO REVDAT 3 29-NOV-23 7C8J 1 REMARK REVDAT 2 03-FEB-21 7C8J 1 REMARK REVDAT 1 27-JAN-21 7C8J 0 JRNL AUTH K.LIU,S.TAN,S.NIU,J.WANG,L.WU,H.SUN,Y.ZHANG,X.PAN,X.QU,P.DU, JRNL AUTH 2 Y.MENG,Y.JIA,Q.CHEN,C.DENG,J.YAN,H.W.WANG,Q.WANG,J.QI, JRNL AUTH 3 G.F.GAO JRNL TITL CROSS-SPECIES RECOGNITION OF SARS-COV-2 TO BAT ACE2. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33335073 JRNL DOI 10.1073/PNAS.2020216118 REMARK 2 REMARK 2 RESOLUTION. 3.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 22029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.8900 - 6.3600 0.99 3036 153 0.1970 0.2356 REMARK 3 2 6.3600 - 5.0500 1.00 2896 163 0.2107 0.2685 REMARK 3 3 5.0500 - 4.4100 1.00 2853 185 0.1881 0.2271 REMARK 3 4 4.4100 - 4.0100 1.00 2849 152 0.2064 0.2795 REMARK 3 5 4.0100 - 3.7200 1.00 2842 148 0.2361 0.3169 REMARK 3 6 3.7200 - 3.5000 0.98 2799 139 0.2538 0.3126 REMARK 3 7 3.5000 - 3.3300 0.81 2291 99 0.2784 0.2990 REMARK 3 8 3.3300 - 3.1800 0.48 1355 69 0.3068 0.3810 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.361 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.233 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7520 REMARK 3 ANGLE : 0.682 10203 REMARK 3 CHIRALITY : 0.045 1061 REMARK 3 PLANARITY : 0.005 1319 REMARK 3 DIHEDRAL : 23.671 2770 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -58.9805 29.1308 -25.8604 REMARK 3 T TENSOR REMARK 3 T11: 0.2734 T22: 0.2023 REMARK 3 T33: 0.2039 T12: 0.0058 REMARK 3 T13: -0.0905 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.4328 L22: 0.4883 REMARK 3 L33: 0.2547 L12: 0.1029 REMARK 3 L13: -0.2446 L23: 0.0429 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: -0.0136 S13: 0.0021 REMARK 3 S21: 0.0692 S22: -0.0026 S23: 0.0183 REMARK 3 S31: -0.0448 S32: 0.0955 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A):-111.8168 22.8013 -16.9499 REMARK 3 T TENSOR REMARK 3 T11: 0.4126 T22: 0.2925 REMARK 3 T33: 0.3844 T12: 0.1524 REMARK 3 T13: -0.0022 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.1019 L22: 0.0900 REMARK 3 L33: 0.0756 L12: -0.0481 REMARK 3 L13: 0.1090 L23: -0.0298 REMARK 3 S TENSOR REMARK 3 S11: -0.1997 S12: 0.0025 S13: 0.1310 REMARK 3 S21: 0.1402 S22: 0.1863 S23: 0.0927 REMARK 3 S31: 0.0601 S32: -0.0473 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22038 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.180 REMARK 200 RESOLUTION RANGE LOW (A) : 48.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 48.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 6LZG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SUCCINIC ACID PH 7.0, 0.1 M REMARK 280 BICINE PH 8.5, 30% V/V POLYETHYLENE GLYCOL MONOMETHYL ETHER 550, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 81.59850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 81.59850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 105.83550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 81.59850 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 81.59850 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 105.83550 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 81.59850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 81.59850 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 105.83550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 81.59850 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 81.59850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 105.83550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 81.59850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 81.59850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 105.83550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 81.59850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 81.59850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 105.83550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 81.59850 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 81.59850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 105.83550 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 81.59850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 81.59850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 105.83550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 429 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 ARG A 600 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 678 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 718 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 183 OD2 ASP A 509 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 635 CA - CB - CG ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 87 54.29 -91.83 REMARK 500 ASN A 137 86.95 -157.18 REMARK 500 GLU A 211 153.31 -47.16 REMARK 500 ILE A 573 -52.07 -123.80 REMARK 500 GLU A 634 68.26 64.60 REMARK 500 ILE A 679 -53.04 -122.69 REMARK 500 ASP A 719 -4.62 74.29 REMARK 500 ASP B 428 54.91 -91.02 REMARK 500 CYS B 525 -60.07 -94.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 210 GLU A 211 -143.91 REMARK 500 SER A 212 SER A 213 -130.21 REMARK 500 SER A 626 ALA A 627 -145.48 REMARK 500 HIS B 519 ALA B 520 -149.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 374 NE2 REMARK 620 2 HIS A 378 NE2 93.9 REMARK 620 3 GLU A 402 OE1 64.9 84.5 REMARK 620 4 GLU A 402 OE2 113.6 101.2 53.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 801 DBREF 7C8J A 20 726 UNP E2DHI3 E2DHI3_RHIMR 20 726 DBREF 7C8J B 333 527 UNP P0DTC2 SPIKE_SARS2 333 527 SEQRES 1 A 707 THR THR GLU ASP GLU ALA LYS LYS PHE LEU ASP LYS PHE SEQRES 2 A 707 ASN SER LYS ALA GLU ASP LEU SER TYR GLU SER SER LEU SEQRES 3 A 707 ALA SER TRP ASP TYR ASN THR ASN ILE SER ASP GLU ASN SEQRES 4 A 707 VAL GLN LYS MET ASP GLU ALA GLY ALA LYS TRP SER ALA SEQRES 5 A 707 PHE TYR GLU GLU GLN SER LYS LEU ALA LYS ASN TYR PRO SEQRES 6 A 707 LEU GLU GLU ILE GLN ASN ASP THR VAL LYS ARG GLN LEU SEQRES 7 A 707 GLN ILE LEU GLN GLN SER GLY SER PRO VAL LEU SER GLU SEQRES 8 A 707 ASP LYS SER LYS ARG LEU ASN SER ILE LEU ASN ALA MET SEQRES 9 A 707 SER THR ILE TYR SER THR GLY LYS VAL CYS LYS PRO ASN SEQRES 10 A 707 ASN PRO GLN GLU CYS LEU LEU LEU GLU PRO GLY LEU ASP SEQRES 11 A 707 ASN ILE MET GLY THR SER LYS ASP TYR ASN GLU ARG LEU SEQRES 12 A 707 TRP ALA TRP GLU GLY TRP ARG ALA GLU VAL GLY LYS GLN SEQRES 13 A 707 LEU ARG PRO LEU TYR GLU GLU TYR VAL VAL LEU LYS ASN SEQRES 14 A 707 GLU MET ALA ARG GLY TYR HIS TYR GLU ASP TYR GLY ASP SEQRES 15 A 707 TYR TRP ARG ARG ASP TYR GLU THR GLU GLU SER SER GLY SEQRES 16 A 707 PRO GLY TYR SER ARG ASP GLN LEU MET LYS ASP VAL ASP SEQRES 17 A 707 ARG ILE PHE THR GLU ILE LYS PRO LEU TYR GLU HIS LEU SEQRES 18 A 707 HIS ALA TYR VAL ARG ALA LYS LEU MET ASP THR TYR PRO SEQRES 19 A 707 LEU HIS ILE SER PRO THR GLY CYS LEU PRO ALA HIS LEU SEQRES 20 A 707 LEU GLY ASP MET TRP GLY ARG PHE TRP THR ASN LEU TYR SEQRES 21 A 707 PRO LEU THR VAL PRO PHE GLY GLN LYS PRO ASN ILE ASP SEQRES 22 A 707 VAL THR ASP ALA MET LEU ASN GLN GLY TRP ASP ALA ASN SEQRES 23 A 707 ARG ILE PHE LYS GLU ALA GLU LYS PHE PHE VAL SER VAL SEQRES 24 A 707 SER LEU PRO LYS MET THR GLU GLY PHE TRP ASN LYS SER SEQRES 25 A 707 MET LEU THR GLU PRO GLY ASP GLY ARG LYS VAL VAL CYS SEQRES 26 A 707 HIS PRO THR ALA TRP ASP LEU GLY LYS GLY ASP PHE ARG SEQRES 27 A 707 ILE LYS MET CYS THR LYS VAL THR MET GLU ASP PHE LEU SEQRES 28 A 707 THR ALA HIS HIS GLU MET GLY HIS ILE GLN TYR ASP MET SEQRES 29 A 707 ALA TYR ALA SER GLN PRO TYR LEU LEU ARG ASN GLY ALA SEQRES 30 A 707 ASN GLU GLY PHE HIS GLU ALA VAL GLY GLU VAL MET SER SEQRES 31 A 707 LEU SER VAL ALA THR PRO LYS HIS LEU LYS THR MET GLY SEQRES 32 A 707 LEU LEU SER PRO ASP PHE ARG GLU ASP ASP GLU THR GLU SEQRES 33 A 707 ILE ASN PHE LEU LEU LYS GLN ALA LEU ASN ILE VAL GLY SEQRES 34 A 707 THR LEU PRO PHE THR TYR MET LEU GLU LYS TRP ARG TRP SEQRES 35 A 707 MET VAL PHE LYS GLY GLU ILE PRO LYS GLU GLU TRP MET SEQRES 36 A 707 LYS LYS TRP TRP GLU MET LYS ARG GLU ILE VAL GLY VAL SEQRES 37 A 707 VAL GLU PRO VAL PRO HIS ASP GLU THR TYR CYS ASP PRO SEQRES 38 A 707 ALA SER LEU PHE HIS VAL ALA ASN ASP TYR SER PHE ILE SEQRES 39 A 707 ARG TYR TYR THR ARG THR ILE PHE GLU PHE GLN PHE HIS SEQRES 40 A 707 GLU ALA LEU CYS ARG ILE ALA GLN HIS ASN GLY PRO LEU SEQRES 41 A 707 HIS LYS CYS ASP ILE SER ASN SER THR ASP ALA GLY LYS SEQRES 42 A 707 LYS LEU HIS GLN MET LEU SER VAL GLY LYS SER GLN ALA SEQRES 43 A 707 TRP THR LYS THR LEU GLU ASP ILE VAL ASP SER ARG ASN SEQRES 44 A 707 MET ASP VAL GLY PRO LEU LEU ARG TYR PHE LYS PRO LEU SEQRES 45 A 707 TYR THR TRP LEU GLN GLU GLN ASN ARG LYS SER TYR VAL SEQRES 46 A 707 GLY TRP ASN THR ASP TRP SER PRO TYR ALA ASP GLN SER SEQRES 47 A 707 ILE LYS VAL TRP ILE SER LEU LYS SER ALA LEU GLY GLU SEQRES 48 A 707 LYS ALA TYR GLU TRP ASN ASP ASN GLU MET TYR LEU PHE SEQRES 49 A 707 ARG SER SER VAL ALA TYR ALA MET ARG GLU TYR PHE LEU SEQRES 50 A 707 LYS THR LYS ASN GLN THR ILE LEU PHE GLY ASP GLU ASN SEQRES 51 A 707 VAL TRP VAL SER ASN LEU LYS PRO ARG ILE SER PHE ASN SEQRES 52 A 707 PHE HIS VAL THR SER PRO GLY ASN VAL SER ASP ILE ILE SEQRES 53 A 707 PRO ARG PRO GLU VAL GLU GLY ALA ILE ARG MET SER ARG SEQRES 54 A 707 SER ARG ILE ASN ASP ALA PHE ARG LEU ASP ASP ASN SER SEQRES 55 A 707 LEU GLU PHE LEU GLY SEQRES 1 B 195 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 B 195 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 B 195 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 B 195 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 B 195 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 B 195 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 B 195 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 B 195 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 B 195 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 B 195 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 B 195 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 B 195 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 B 195 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 B 195 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 B 195 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO HET ZN A 801 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ HELIX 1 AA1 THR A 20 ASN A 53 1 34 HELIX 2 AA2 ASP A 56 ASN A 82 1 27 HELIX 3 AA3 ASN A 90 SER A 103 1 14 HELIX 4 AA4 SER A 109 GLY A 130 1 22 HELIX 5 AA5 PRO A 146 SER A 155 1 10 HELIX 6 AA6 ASP A 157 GLU A 171 1 15 HELIX 7 AA7 VAL A 172 TYR A 194 1 23 HELIX 8 AA8 ASP A 198 ARG A 204 1 7 HELIX 9 AA9 ARG A 205 GLU A 208 5 4 HELIX 10 AB1 SER A 218 TYR A 252 1 35 HELIX 11 AB2 TRP A 275 ASN A 277 5 3 HELIX 12 AB3 LEU A 278 VAL A 283 1 6 HELIX 13 AB4 VAL A 293 GLN A 300 1 8 HELIX 14 AB5 ASP A 303 VAL A 318 1 16 HELIX 15 AB6 THR A 324 SER A 331 1 8 HELIX 16 AB7 MET A 366 TYR A 385 1 20 HELIX 17 AB8 ALA A 386 GLN A 388 5 3 HELIX 18 AB9 PRO A 389 ARG A 393 5 5 HELIX 19 AC1 PHE A 400 ALA A 413 1 14 HELIX 20 AC2 THR A 414 THR A 420 1 7 HELIX 21 AC3 ASP A 431 VAL A 447 1 17 HELIX 22 AC4 GLY A 448 GLY A 466 1 19 HELIX 23 AC5 PRO A 469 GLU A 471 5 3 HELIX 24 AC6 GLU A 472 ILE A 484 1 13 HELIX 25 AC7 CYS A 498 SER A 502 5 5 HELIX 26 AC8 LEU A 503 ASN A 508 1 6 HELIX 27 AC9 PHE A 512 ALA A 533 1 22 HELIX 28 AD1 PRO A 538 CYS A 542 5 5 HELIX 29 AD2 SER A 547 GLY A 561 1 15 HELIX 30 AD3 ALA A 565 ASP A 575 1 11 HELIX 31 AD4 VAL A 581 ASN A 599 1 19 HELIX 32 AD5 ASN A 636 LYS A 659 1 24 HELIX 33 AD6 GLY A 666 GLU A 668 5 3 HELIX 34 AD7 PRO A 696 ARG A 716 1 21 HELIX 35 AD8 PRO B 337 ASN B 343 1 7 HELIX 36 AD9 ASP B 364 ASN B 370 1 7 HELIX 37 AE1 ASP B 405 ILE B 410 5 6 HELIX 38 AE2 GLY B 416 ASN B 422 1 7 HELIX 39 AE3 SER B 438 SER B 443 1 6 HELIX 40 AE4 GLY B 502 TYR B 505 5 4 SHEET 1 AA1 2 LYS A 131 VAL A 132 0 SHEET 2 AA1 2 LEU A 142 LEU A 143 -1 O LEU A 142 N VAL A 132 SHEET 1 AA2 2 LEU A 262 PRO A 263 0 SHEET 2 AA2 2 VAL A 487 VAL A 488 1 O VAL A 488 N LEU A 262 SHEET 1 AA3 2 THR A 347 GLY A 352 0 SHEET 2 AA3 2 ASP A 355 LYS A 359 -1 O ARG A 357 N TRP A 349 SHEET 1 AA4 3 ILE A 618 TRP A 621 0 SHEET 2 AA4 3 SER A 680 SER A 687 -1 O PHE A 681 N VAL A 620 SHEET 3 AA4 3 VAL A 670 SER A 673 -1 N SER A 673 O ASN A 682 SHEET 1 AA5 3 ILE A 618 TRP A 621 0 SHEET 2 AA5 3 SER A 680 SER A 687 -1 O PHE A 681 N VAL A 620 SHEET 3 AA5 3 ASN A 690 ILE A 694 -1 O ASP A 693 N SER A 687 SHEET 1 AA6 5 ASN B 354 ILE B 358 0 SHEET 2 AA6 5 ASN B 394 ARG B 403 -1 O SER B 399 N ASN B 354 SHEET 3 AA6 5 PRO B 507 GLU B 516 -1 O TYR B 508 N ILE B 402 SHEET 4 AA6 5 GLY B 431 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA6 5 THR B 376 TYR B 380 -1 N LYS B 378 O VAL B 433 SHEET 1 AA7 2 LEU B 452 ARG B 454 0 SHEET 2 AA7 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA8 2 TYR B 473 GLN B 474 0 SHEET 2 AA8 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SSBOND 1 CYS A 133 CYS A 141 1555 1555 2.03 SSBOND 2 CYS A 344 CYS A 361 1555 1555 2.03 SSBOND 3 CYS A 530 CYS A 542 1555 1555 2.03 SSBOND 4 CYS B 336 CYS B 361 1555 1555 2.03 SSBOND 5 CYS B 379 CYS B 432 1555 1555 2.03 SSBOND 6 CYS B 391 CYS B 525 1555 1555 2.03 SSBOND 7 CYS B 480 CYS B 488 1555 1555 2.03 LINK NE2 HIS A 374 ZN ZN A 801 1555 1555 2.11 LINK NE2 HIS A 378 ZN ZN A 801 1555 1555 2.10 LINK OE1 GLU A 402 ZN ZN A 801 1555 1555 2.66 LINK OE2 GLU A 402 ZN ZN A 801 1555 1555 2.01 CISPEP 1 GLU A 145 PRO A 146 0 -0.05 SITE 1 AC1 3 HIS A 374 HIS A 378 GLU A 402 CRYST1 163.197 163.197 211.671 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006128 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004724 0.00000