HEADER PROTEIN BINDING 03-JUN-20 7C8V TITLE STRUCTURE OF SYBODY SR4 IN COMPLEX WITH THE SARS-COV-2 S RECEPTOR TITLE 2 BINDING DOMAIN (RBD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTHETIC NANOBODY SR4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPIKE PROTEIN S1; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RECEPTOR BINDING DOMAIN (RBD); COMPND 9 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN,SPIKE GLYCOPROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 8 2; SOURCE 9 ORGANISM_COMMON: 2019-NCOV; SOURCE 10 ORGANISM_TAXID: 2697049; SOURCE 11 GENE: S, 2; SOURCE 12 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS CORONAVIRUS, COVID-19, NANOBODY, NEUTRALIZING ANTIBODY, RECEPTOR KEYWDS 2 BINDING PROTEIN, SARS-COV-2, S PROTEIN, SYNTHETIC ANTIBODY, VHH., KEYWDS 3 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.LI,H.YAO,H.CAI,W.QIN,D.LI REVDAT 6 30-OCT-24 7C8V 1 REMARK REVDAT 5 29-NOV-23 7C8V 1 REMARK REVDAT 4 05-JAN-22 7C8V 1 JRNL REVDAT 3 10-MAR-21 7C8V 1 COMPND HETSYN REVDAT 2 29-JUL-20 7C8V 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 24-JUN-20 7C8V 0 JRNL AUTH T.LI,H.CAI,H.YAO,B.ZHOU,N.ZHANG,M.F.VAN VLISSINGEN,T.KUIKEN, JRNL AUTH 2 W.HAN,C.H.GEURTSVANKESSEL,Y.GONG,Y.ZHAO,Q.SHEN,W.QIN, JRNL AUTH 3 X.X.TIAN,C.PENG,Y.LAI,Y.WANG,C.A.J.HUTTER,S.M.KUO,J.BAO, JRNL AUTH 4 C.LIU,Y.WANG,A.S.RICHARD,H.RAOUL,J.LAN,M.A.SEEGER,Y.CONG, JRNL AUTH 5 B.ROCKX,G.WONG,Y.BI,D.LAVILLETTE,D.LI JRNL TITL A SYNTHETIC NANOBODY TARGETING RBD PROTECTS HAMSTERS FROM JRNL TITL 2 SARS-COV-2 INFECTION. JRNL REF NAT COMMUN V. 12 4635 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34330908 JRNL DOI 10.1038/S41467-021-24905-Z REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4000 - 4.4700 1.00 2946 145 0.1726 0.1871 REMARK 3 2 4.4700 - 3.5500 1.00 2728 125 0.1506 0.1778 REMARK 3 3 3.5500 - 3.1000 1.00 2657 143 0.1794 0.2314 REMARK 3 4 3.1000 - 2.8200 1.00 2649 136 0.1951 0.2306 REMARK 3 5 2.8200 - 2.6200 1.00 2624 121 0.2014 0.2551 REMARK 3 6 2.6200 - 2.4600 1.00 2617 123 0.2180 0.2892 REMARK 3 7 2.4600 - 2.3400 1.00 2551 150 0.2132 0.2685 REMARK 3 8 2.3400 - 2.2400 1.00 2604 130 0.2219 0.2841 REMARK 3 9 2.2400 - 2.1500 1.00 2559 140 0.2420 0.3264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.237 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.445 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2642 REMARK 3 ANGLE : 0.845 3594 REMARK 3 CHIRALITY : 0.051 374 REMARK 3 PLANARITY : 0.005 463 REMARK 3 DIHEDRAL : 23.980 392 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25170 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 47.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 1.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6M0J, 5M13 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3000, 100MM HEPES PH REMARK 280 7.5, 200MM SODIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 229.68400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.84200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.26300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.42100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 287.10500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 229.68400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 114.84200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 57.42100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 172.26300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 287.10500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 819 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 828 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 GLU A 120 REMARK 465 GLN A 121 REMARK 465 LYS A 122 REMARK 465 LEU A 123 REMARK 465 ILE A 124 REMARK 465 SER A 125 REMARK 465 GLU A 126 REMARK 465 GLU A 127 REMARK 465 ASP A 128 REMARK 465 LEU A 129 REMARK 465 ASN A 130 REMARK 465 SER A 131 REMARK 465 ALA A 132 REMARK 465 VAL A 133 REMARK 465 ASP A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 ALA B 327 REMARK 465 GLY B 328 REMARK 465 SER B 329 REMARK 465 PRO B 330 REMARK 465 ASN B 331 REMARK 465 ILE B 332 REMARK 465 THR B 333 REMARK 465 LYS B 528 REMARK 465 LYS B 529 REMARK 465 SER B 530 REMARK 465 THR B 531 REMARK 465 GLY B 532 REMARK 465 THR B 533 REMARK 465 LEU B 534 REMARK 465 GLU B 535 REMARK 465 VAL B 536 REMARK 465 LEU B 537 REMARK 465 PHE B 538 REMARK 465 GLN B 539 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 1 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 92 169.40 178.22 REMARK 500 PHE B 377 85.82 -157.27 REMARK 500 ASN B 422 -53.40 -124.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 7C8V A -3 140 PDB 7C8V 7C8V -3 140 DBREF 7C8V B 330 531 UNP P0DTC2 SPIKE_SARS2 330 531 SEQADV 7C8V ALA B 327 UNP P0DTC2 EXPRESSION TAG SEQADV 7C8V GLY B 328 UNP P0DTC2 EXPRESSION TAG SEQADV 7C8V SER B 329 UNP P0DTC2 EXPRESSION TAG SEQADV 7C8V GLY B 532 UNP P0DTC2 EXPRESSION TAG SEQADV 7C8V THR B 533 UNP P0DTC2 EXPRESSION TAG SEQADV 7C8V LEU B 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7C8V GLU B 535 UNP P0DTC2 EXPRESSION TAG SEQADV 7C8V VAL B 536 UNP P0DTC2 EXPRESSION TAG SEQADV 7C8V LEU B 537 UNP P0DTC2 EXPRESSION TAG SEQADV 7C8V PHE B 538 UNP P0DTC2 EXPRESSION TAG SEQADV 7C8V GLN B 539 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 144 GLY SER SER SER GLN VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 A 144 GLY LEU VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 A 144 ALA ALA SER GLY PHE PRO VAL TYR SER TRP ASN MET TRP SEQRES 4 A 144 TRP TYR ARG GLN ALA PRO GLY LYS GLU ARG GLU TRP VAL SEQRES 5 A 144 ALA ALA ILE GLU SER HIS GLY ASP SER THR ARG TYR ALA SEQRES 6 A 144 ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SEQRES 7 A 144 ALA LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS SEQRES 8 A 144 PRO GLU ASP THR ALA VAL TYR TYR CYS TYR VAL TRP VAL SEQRES 9 A 144 GLY HIS THR TYR TYR GLY GLN GLY THR GLN VAL THR VAL SEQRES 10 A 144 SER ALA GLY ARG ALA GLY GLU GLN LYS LEU ILE SER GLU SEQRES 11 A 144 GLU ASP LEU ASN SER ALA VAL ASP HIS HIS HIS HIS HIS SEQRES 12 A 144 HIS SEQRES 1 B 213 ALA GLY SER PRO ASN ILE THR ASN LEU CYS PRO PHE GLY SEQRES 2 B 213 GLU VAL PHE ASN ALA THR ARG PHE ALA SER VAL TYR ALA SEQRES 3 B 213 TRP ASN ARG LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SEQRES 4 B 213 SER VAL LEU TYR ASN SER ALA SER PHE SER THR PHE LYS SEQRES 5 B 213 CYS TYR GLY VAL SER PRO THR LYS LEU ASN ASP LEU CYS SEQRES 6 B 213 PHE THR ASN VAL TYR ALA ASP SER PHE VAL ILE ARG GLY SEQRES 7 B 213 ASP GLU VAL ARG GLN ILE ALA PRO GLY GLN THR GLY LYS SEQRES 8 B 213 ILE ALA ASP TYR ASN TYR LYS LEU PRO ASP ASP PHE THR SEQRES 9 B 213 GLY CYS VAL ILE ALA TRP ASN SER ASN ASN LEU ASP SER SEQRES 10 B 213 LYS VAL GLY GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE SEQRES 11 B 213 ARG LYS SER ASN LEU LYS PRO PHE GLU ARG ASP ILE SER SEQRES 12 B 213 THR GLU ILE TYR GLN ALA GLY SER THR PRO CYS ASN GLY SEQRES 13 B 213 VAL GLU GLY PHE ASN CYS TYR PHE PRO LEU GLN SER TYR SEQRES 14 B 213 GLY PHE GLN PRO THR ASN GLY VAL GLY TYR GLN PRO TYR SEQRES 15 B 213 ARG VAL VAL VAL LEU SER PHE GLU LEU LEU HIS ALA PRO SEQRES 16 B 213 ALA THR VAL CYS GLY PRO LYS LYS SER THR GLY THR LEU SEQRES 17 B 213 GLU VAL LEU PHE GLN HET GOL A 201 6 HET GOL B 601 6 HET GOL B 602 6 HET NAG B 603 14 HET GOL B 604 6 HET GOL B 605 6 HET GOL B 606 6 HET GOL B 607 6 HET GOL B 608 6 HETNAM GOL GLYCEROL HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 GOL 8(C3 H8 O3) FORMUL 6 NAG C8 H15 N O6 FORMUL 12 HOH *238(H2 O) HELIX 1 AA1 PRO A 28 TRP A 32 5 5 HELIX 2 AA2 LYS A 87 THR A 91 5 5 HELIX 3 AA3 PRO B 337 ASN B 343 1 7 HELIX 4 AA4 SER B 349 TRP B 353 5 5 HELIX 5 AA5 ASP B 364 ASN B 370 1 7 HELIX 6 AA6 SER B 383 ASP B 389 5 7 HELIX 7 AA7 ASP B 405 ILE B 410 5 6 HELIX 8 AA8 GLY B 416 ASN B 422 1 7 HELIX 9 AA9 SER B 438 SER B 443 1 6 HELIX 10 AB1 GLY B 502 TYR B 505 5 4 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AA2 6 GLY A 10 GLN A 13 0 SHEET 2 AA2 6 THR A 109 SER A 114 1 O SER A 114 N VAL A 12 SHEET 3 AA2 6 ALA A 92 TRP A 99 -1 N TYR A 94 O THR A 109 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N GLN A 39 O VAL A 93 SHEET 5 AA2 6 GLU A 46 ILE A 51 -1 O ALA A 49 N TRP A 36 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O ARG A 59 N ALA A 50 SHEET 1 AA3 4 GLY A 10 GLN A 13 0 SHEET 2 AA3 4 THR A 109 SER A 114 1 O SER A 114 N VAL A 12 SHEET 3 AA3 4 ALA A 92 TRP A 99 -1 N TYR A 94 O THR A 109 SHEET 4 AA3 4 THR A 103 TYR A 105 -1 O TYR A 104 N VAL A 98 SHEET 1 AA4 5 ASN B 354 ILE B 358 0 SHEET 2 AA4 5 ASN B 394 ARG B 403 -1 O VAL B 395 N ILE B 358 SHEET 3 AA4 5 PRO B 507 GLU B 516 -1 O VAL B 512 N ASP B 398 SHEET 4 AA4 5 GLY B 431 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA4 5 THR B 376 TYR B 380 -1 N TYR B 380 O GLY B 431 SHEET 1 AA5 3 CYS B 361 VAL B 362 0 SHEET 2 AA5 3 VAL B 524 CYS B 525 1 O CYS B 525 N CYS B 361 SHEET 3 AA5 3 CYS B 391 PHE B 392 -1 N PHE B 392 O VAL B 524 SHEET 1 AA6 2 LEU B 452 ARG B 454 0 SHEET 2 AA6 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA7 2 TYR B 473 GLN B 474 0 SHEET 2 AA7 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.05 SSBOND 2 CYS B 336 CYS B 361 1555 1555 2.03 SSBOND 3 CYS B 379 CYS B 432 1555 1555 2.03 SSBOND 4 CYS B 391 CYS B 525 1555 1555 2.03 SSBOND 5 CYS B 480 CYS B 488 1555 1555 2.01 LINK ND2 ASN B 343 C1 NAG B 603 1555 1555 1.45 CRYST1 65.553 65.553 344.526 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015255 0.008807 0.000000 0.00000 SCALE2 0.000000 0.017615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002903 0.00000