HEADER IMMUNE SYSTEM 04-JUN-20 7C94 TITLE CRYSTAL STRUCTURE OF THE ANTI-HUMAN PODOPLANIN ANTIBODY FAB FRAGMENT TITLE 2 COMPLEX WITH GLYCOPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN OF FAB FRAGMENT; COMPND 3 CHAIN: A, D; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: HEAVY CHAIN OF FAB FRAGMENT; COMPND 6 CHAIN: B, E; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: PEPTIDE FROM PODOPLANIN; COMPND 9 CHAIN: C, F; COMPND 10 SYNONYM: AGGRUS,GLYCOPROTEIN 36,GP36,PA2.26 ANTIGEN,T1-ALPHA,T1A; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: WE SYNTHESIZED THE BINDING EPITOPE REGION OF THE FAB COMPND 13 FRAGMENT THAT INCLUDES THE PEPTIDE (-L67VATSVNSV-T76-GIRIEDLP84-) COMPND 14 POSSESSING A DISIALYL-CORE-1 O-GLYCAN AT THER76. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090; SOURCE 7 MOL_ID: 3; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS HUMAN PODOPLANIN, MONOCLONAL ANTIBODY, GLYCOPEPTIDE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.SUZUKI,S.NAKAMURA,S.OGASAWARA,K.NARUCHI,J.SHIMABUKURO,N.TUKAHARA, AUTHOR 2 M.K.KANEKO,Y.KATO,T.MURATA REVDAT 3 29-NOV-23 7C94 1 REMARK REVDAT 2 04-NOV-20 7C94 1 JRNL REVDAT 1 30-SEP-20 7C94 0 JRNL AUTH S.OGASAWARA,K.SUZUKI,K.NARUCHI,S.NAKAMURA,J.SHIMABUKURO, JRNL AUTH 2 N.TSUKAHARA,M.K.KANEKO,Y.KATO,T.MURATA JRNL TITL CRYSTAL STRUCTURE OF AN ANTI-PODOPLANIN ANTIBODY BOUND TO A JRNL TITL 2 DISIALYLATED O-LINKED GLYCOPEPTIDE. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 533 57 2020 JRNL REFN ESSN 1090-2104 JRNL PMID 32921414 JRNL DOI 10.1016/J.BBRC.2020.08.103 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 19390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2000 - 8.4000 0.98 1284 135 0.2108 0.2488 REMARK 3 2 8.4000 - 6.6800 1.00 1314 134 0.2002 0.2075 REMARK 3 3 6.6800 - 5.8400 1.00 1298 155 0.2162 0.2491 REMARK 3 4 5.8400 - 5.3000 1.00 1240 153 0.2002 0.2135 REMARK 3 5 5.3000 - 4.9200 1.00 1312 148 0.1915 0.2334 REMARK 3 6 4.9200 - 4.6300 0.99 1265 149 0.1762 0.1787 REMARK 3 7 4.6300 - 4.4000 1.00 1250 138 0.1610 0.2240 REMARK 3 8 4.4000 - 4.2100 0.99 1308 140 0.1846 0.2325 REMARK 3 9 4.2100 - 4.0500 1.00 1287 119 0.1992 0.2627 REMARK 3 10 4.0500 - 3.9100 0.99 1259 156 0.2052 0.2846 REMARK 3 11 3.9100 - 3.7900 0.99 1308 141 0.1954 0.2150 REMARK 3 12 3.7900 - 3.6800 1.00 1306 145 0.2085 0.2426 REMARK 3 13 3.6800 - 3.5800 0.99 1171 116 0.2277 0.2812 REMARK 3 14 3.5800 - 3.4900 0.99 1419 165 0.2197 0.2420 REMARK 3 15 3.4900 - 3.4100 1.00 1261 136 0.2461 0.2932 REMARK 3 16 3.4100 - 3.3400 1.00 1283 133 0.2219 0.2566 REMARK 3 17 3.3400 - 3.2800 0.99 1278 145 0.2503 0.2893 REMARK 3 18 3.2800 - 3.2100 0.99 1265 144 0.2415 0.2981 REMARK 3 19 3.2100 - 3.1600 1.00 1322 153 0.2552 0.2889 REMARK 3 20 3.1600 - 3.1000 1.00 1231 131 0.2841 0.2808 REMARK 3 21 3.1000 - 3.0500 0.98 1263 137 0.2910 0.3312 REMARK 3 22 3.0500 - 3.0100 0.97 1291 148 0.2965 0.3549 REMARK 3 23 3.0100 - 2.9600 0.98 1289 157 0.2896 0.2903 REMARK 3 24 2.9600 - 2.9200 0.98 1213 129 0.3172 0.3633 REMARK 3 25 2.9200 - 2.8800 0.98 1229 158 0.3495 0.3668 REMARK 3 26 2.8800 - 2.8400 0.89 1193 125 0.3415 0.3787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.419 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.078 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7220 REMARK 3 ANGLE : 0.740 9843 REMARK 3 CHIRALITY : 0.045 1119 REMARK 3 PLANARITY : 0.004 1231 REMARK 3 DIHEDRAL : 15.357 4251 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7364 2.2916 -99.7413 REMARK 3 T TENSOR REMARK 3 T11: 0.4110 T22: 0.5207 REMARK 3 T33: 0.3218 T12: -0.0012 REMARK 3 T13: 0.0140 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.1113 L22: 0.0035 REMARK 3 L33: 0.0114 L12: 0.0667 REMARK 3 L13: -0.0263 L23: 0.0597 REMARK 3 S TENSOR REMARK 3 S11: -0.4633 S12: -0.5226 S13: -0.4406 REMARK 3 S21: 0.0525 S22: 0.2150 S23: -0.1386 REMARK 3 S31: 0.5435 S32: -0.0759 S33: -0.0066 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5661 12.5400-104.8785 REMARK 3 T TENSOR REMARK 3 T11: 0.3152 T22: 0.4070 REMARK 3 T33: 0.4033 T12: 0.0044 REMARK 3 T13: -0.0196 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.5537 L22: 1.2556 REMARK 3 L33: 1.0737 L12: -0.0756 REMARK 3 L13: -0.2536 L23: -0.7907 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: 0.3395 S13: -0.0948 REMARK 3 S21: -0.2598 S22: -0.0371 S23: -0.1655 REMARK 3 S31: 0.0226 S32: 0.2272 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2847 6.2341 -95.6431 REMARK 3 T TENSOR REMARK 3 T11: 0.3825 T22: 0.2812 REMARK 3 T33: 0.3617 T12: -0.0168 REMARK 3 T13: 0.0122 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.8949 L22: 0.1652 REMARK 3 L33: 2.0427 L12: -0.7457 REMARK 3 L13: -0.1449 L23: -0.6635 REMARK 3 S TENSOR REMARK 3 S11: -0.2617 S12: 0.0274 S13: -0.0124 REMARK 3 S21: 0.0735 S22: 0.0251 S23: 0.0949 REMARK 3 S31: -0.0611 S32: 0.1050 S33: -0.0082 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3771 -7.6382 -73.1486 REMARK 3 T TENSOR REMARK 3 T11: 0.3202 T22: 0.3304 REMARK 3 T33: 0.3349 T12: -0.0213 REMARK 3 T13: -0.0422 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 1.2853 L22: 0.8858 REMARK 3 L33: 1.4940 L12: -0.4934 REMARK 3 L13: -1.1478 L23: 1.0694 REMARK 3 S TENSOR REMARK 3 S11: 0.1223 S12: 0.2955 S13: 0.0213 REMARK 3 S21: 0.1756 S22: 0.0136 S23: 0.0940 REMARK 3 S31: -0.0802 S32: -0.0421 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4031 -15.4811 -67.9842 REMARK 3 T TENSOR REMARK 3 T11: 0.3484 T22: 0.3490 REMARK 3 T33: 0.4817 T12: 0.0517 REMARK 3 T13: -0.0549 T23: -0.0436 REMARK 3 L TENSOR REMARK 3 L11: 1.7879 L22: 2.0112 REMARK 3 L33: 0.8959 L12: 0.7051 REMARK 3 L13: -1.0312 L23: -0.6981 REMARK 3 S TENSOR REMARK 3 S11: -0.2364 S12: 0.0457 S13: -0.3673 REMARK 3 S21: 0.1768 S22: -0.1149 S23: -0.2072 REMARK 3 S31: 0.4715 S32: -0.2934 S33: -0.0030 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1631 22.8602 -87.6733 REMARK 3 T TENSOR REMARK 3 T11: 0.3340 T22: 0.3774 REMARK 3 T33: 0.3234 T12: 0.0183 REMARK 3 T13: -0.0511 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 2.4366 L22: 1.6328 REMARK 3 L33: 1.5747 L12: -0.3660 REMARK 3 L13: -0.9728 L23: 0.7571 REMARK 3 S TENSOR REMARK 3 S11: -0.1203 S12: -0.1706 S13: -0.0417 REMARK 3 S21: 0.0748 S22: 0.1247 S23: 0.1798 REMARK 3 S31: -0.0662 S32: -0.1805 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9041 5.1892 -68.9697 REMARK 3 T TENSOR REMARK 3 T11: 0.3455 T22: 0.2656 REMARK 3 T33: 0.3846 T12: -0.0273 REMARK 3 T13: -0.0121 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.7834 L22: 0.4394 REMARK 3 L33: 1.5316 L12: -0.3816 REMARK 3 L13: 0.2792 L23: -0.4871 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.0683 S13: 0.0423 REMARK 3 S21: 0.0771 S22: 0.0536 S23: -0.0185 REMARK 3 S31: -0.0330 S32: 0.1599 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5424 25.8642-103.7723 REMARK 3 T TENSOR REMARK 3 T11: 1.3892 T22: 0.6302 REMARK 3 T33: -0.0065 T12: -0.1895 REMARK 3 T13: 0.4368 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 4.3702 L22: 2.0248 REMARK 3 L33: 0.4293 L12: 1.7566 REMARK 3 L13: 0.9962 L23: -0.1029 REMARK 3 S TENSOR REMARK 3 S11: -1.0829 S12: 1.2124 S13: 0.0834 REMARK 3 S21: -0.7787 S22: -0.4000 S23: 0.3816 REMARK 3 S31: 0.6728 S32: -0.1021 S33: -0.2406 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7675 -0.4407 -5.8075 REMARK 3 T TENSOR REMARK 3 T11: 0.5210 T22: 0.5809 REMARK 3 T33: 0.6852 T12: 0.1035 REMARK 3 T13: 0.1106 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 0.4192 L22: 0.7822 REMARK 3 L33: 0.8727 L12: 0.0463 REMARK 3 L13: 0.2758 L23: 0.9117 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: -0.5142 S13: -0.3838 REMARK 3 S21: 0.1427 S22: -0.2411 S23: 0.1564 REMARK 3 S31: 0.1851 S32: 0.2059 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 39 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3396 1.8859 -20.5141 REMARK 3 T TENSOR REMARK 3 T11: 0.3318 T22: 0.3405 REMARK 3 T33: 0.3499 T12: 0.0545 REMARK 3 T13: 0.0115 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 0.8356 L22: 0.7490 REMARK 3 L33: 1.0880 L12: 0.4693 REMARK 3 L13: 0.1871 L23: -0.5198 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.2269 S13: 0.0585 REMARK 3 S21: 0.2011 S22: -0.0936 S23: 0.0538 REMARK 3 S31: -0.1010 S32: -0.0099 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 162 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1990 16.0854 -38.0585 REMARK 3 T TENSOR REMARK 3 T11: 0.3405 T22: 0.3179 REMARK 3 T33: 0.3549 T12: -0.0104 REMARK 3 T13: -0.0084 T23: -0.0557 REMARK 3 L TENSOR REMARK 3 L11: 1.0406 L22: 2.3051 REMARK 3 L33: 1.6493 L12: -0.1947 REMARK 3 L13: 0.7543 L23: -1.0780 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: -0.0987 S13: 0.2522 REMARK 3 S21: 0.1019 S22: -0.1064 S23: 0.0634 REMARK 3 S31: -0.0755 S32: 0.0179 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9780 -19.3353 -29.4227 REMARK 3 T TENSOR REMARK 3 T11: 0.4724 T22: 0.4581 REMARK 3 T33: 0.3825 T12: -0.0400 REMARK 3 T13: -0.0534 T23: 0.1382 REMARK 3 L TENSOR REMARK 3 L11: 0.6606 L22: 0.3675 REMARK 3 L33: 0.8584 L12: -0.3190 REMARK 3 L13: 0.8076 L23: -0.5547 REMARK 3 S TENSOR REMARK 3 S11: 0.6350 S12: 0.6630 S13: -0.7707 REMARK 3 S21: -0.1231 S22: -0.0820 S23: 0.2311 REMARK 3 S31: 0.7132 S32: 0.3734 S33: 0.0064 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 18 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2578 -17.8723 -21.0965 REMARK 3 T TENSOR REMARK 3 T11: 0.3565 T22: 0.4669 REMARK 3 T33: 0.4858 T12: 0.0210 REMARK 3 T13: 0.0171 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.8337 L22: 0.8729 REMARK 3 L33: 2.1734 L12: 0.2464 REMARK 3 L13: -0.1173 L23: 0.7140 REMARK 3 S TENSOR REMARK 3 S11: -0.1149 S12: 0.0171 S13: 0.1015 REMARK 3 S21: -0.0368 S22: -0.0626 S23: 0.0880 REMARK 3 S31: 0.0723 S32: -0.1388 S33: 0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 99 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6875 -5.9119 -30.5702 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.3305 REMARK 3 T33: 0.4469 T12: 0.0984 REMARK 3 T13: -0.0145 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: -0.1633 L22: 0.9923 REMARK 3 L33: 3.5170 L12: -0.0310 REMARK 3 L13: 0.0610 L23: -0.2037 REMARK 3 S TENSOR REMARK 3 S11: -0.1033 S12: -0.0823 S13: -0.0446 REMARK 3 S21: 0.0104 S22: 0.1235 S23: -0.0406 REMARK 3 S31: 0.2137 S32: -0.5290 S33: -0.0023 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 144 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3515 2.3046 -45.7457 REMARK 3 T TENSOR REMARK 3 T11: 0.3178 T22: 0.2837 REMARK 3 T33: 0.2960 T12: -0.0146 REMARK 3 T13: -0.0129 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.2012 L22: 1.9166 REMARK 3 L33: 2.1238 L12: 0.9014 REMARK 3 L13: -0.0179 L23: 0.1881 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: -0.2670 S13: 0.0156 REMARK 3 S21: 0.0640 S22: -0.0105 S23: 0.0092 REMARK 3 S31: -0.1528 S32: 0.1059 S33: -0.0001 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 75 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2242 -20.8253 -6.1877 REMARK 3 T TENSOR REMARK 3 T11: 0.5195 T22: 0.6558 REMARK 3 T33: 1.2641 T12: -0.0470 REMARK 3 T13: -0.0705 T23: 0.1120 REMARK 3 L TENSOR REMARK 3 L11: 1.7621 L22: 0.4100 REMARK 3 L33: 1.4503 L12: 0.4838 REMARK 3 L13: 0.0811 L23: 0.6762 REMARK 3 S TENSOR REMARK 3 S11: -0.5144 S12: 0.1790 S13: -0.0213 REMARK 3 S21: -0.1733 S22: -0.5665 S23: 0.1648 REMARK 3 S31: 0.0349 S32: -0.3750 S33: -0.6962 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS. REMARK 4 REMARK 4 7C94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19390 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 44.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.852 REMARK 200 R MERGE (I) : 0.18400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.71 REMARK 200 R MERGE FOR SHELL (I) : 0.65700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 1A4J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 7.5, 0.2M MAGNESIUM REMARK 280 ACETATE, 25% V/V PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.48000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 137 REMARK 465 ALA B 138 REMARK 465 LEU C 67 REMARK 465 VAL C 68 REMARK 465 ALA C 69 REMARK 465 THR C 70 REMARK 465 SER C 71 REMARK 465 VAL C 72 REMARK 465 ASN C 73 REMARK 465 SER C 74 REMARK 465 LEU C 83 REMARK 465 PRO C 84 REMARK 465 CYS D 220 REMARK 465 ALA E 138 REMARK 465 ALA E 139 REMARK 465 LEU F 67 REMARK 465 VAL F 68 REMARK 465 ALA F 69 REMARK 465 THR F 70 REMARK 465 SER F 71 REMARK 465 VAL F 72 REMARK 465 ASN F 73 REMARK 465 SER F 74 REMARK 465 LEU F 83 REMARK 465 PRO F 84 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 NZ REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 GLU B 1 CG CD OE1 OE2 REMARK 470 LYS B 43 CE NZ REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 LYS D 113 CE NZ REMARK 470 LYS D 175 CG CD CE NZ REMARK 470 LYS E 19 CE NZ REMARK 470 GLN E 114 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 100 O1B SIA G 4 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 38 78.56 -105.02 REMARK 500 ALA A 57 -51.17 67.46 REMARK 500 VAL B 48 -64.01 -105.82 REMARK 500 GLU B 100 -156.23 -118.60 REMARK 500 ASP B 182 10.92 59.71 REMARK 500 LEU D 53 -62.66 -105.40 REMARK 500 ALA D 57 -57.02 67.09 REMARK 500 ASN D 218 56.62 -90.30 REMARK 500 VAL E 48 -65.74 -109.33 REMARK 500 GLU E 100 -163.10 -110.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 7C94 A 1 220 PDB 7C94 7C94 1 220 DBREF 7C94 B 1 225 PDB 7C94 7C94 1 225 DBREF 7C94 C 67 84 UNP Q86YL7 PDPN_HUMAN 67 84 DBREF 7C94 D 1 220 PDB 7C94 7C94 1 220 DBREF 7C94 E 1 225 PDB 7C94 7C94 1 225 DBREF 7C94 F 67 84 UNP Q86YL7 PDPN_HUMAN 67 84 SEQRES 1 A 220 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA MET SEQRES 2 A 220 SER VAL GLY GLN LYS VAL THR MET ASN CYS LYS SER SER SEQRES 3 A 220 GLN SER LEU LEU ASN SER SER ASN GLN LYS ASN TYR LEU SEQRES 4 A 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 220 LEU VAL TYR PHE ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 220 ASP ARG PHE ILE GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 220 LEU THR ILE SER SER ALA GLN ALA GLU ASP LEU ALA ASP SEQRES 8 A 220 TYR PHE CYS GLN GLN TYR TYR SER THR PRO PRO THR PHE SEQRES 9 A 220 GLY ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA SEQRES 10 A 220 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 A 220 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 A 220 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 A 220 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 A 220 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 A 220 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 A 220 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 A 220 SER PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 225 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 B 225 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 B 225 PHE THR PHE THR ARG TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 B 225 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA THR ILE SER SEQRES 5 B 225 ASN GLY GLY SER TYR THR TYR TYR LEU ASP SER VAL LYS SEQRES 6 B 225 GLY ARG PHE THR LEU SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 225 LEU TYR LEU GLN MET SER SER LEU ARG SER GLU ASP THR SEQRES 8 B 225 ALA MET TYR TYR CYS ALA ARG ARG GLU GLY GLY GLN ALA SEQRES 9 B 225 GLY PRO ALA TRP PHE VAL TYR TRP GLY GLN GLY THR LEU SEQRES 10 B 225 VAL THR VAL SER ALA ALA LYS THR THR PRO PRO SER VAL SEQRES 11 B 225 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 B 225 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 B 225 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 B 225 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 B 225 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 B 225 THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 B 225 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 18 B 225 ARG ASP CYS GLY SEQRES 1 C 18 LEU VAL ALA THR SER VAL ASN SER VAL THR GLY ILE ARG SEQRES 2 C 18 ILE GLU ASP LEU PRO SEQRES 1 D 220 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA MET SEQRES 2 D 220 SER VAL GLY GLN LYS VAL THR MET ASN CYS LYS SER SER SEQRES 3 D 220 GLN SER LEU LEU ASN SER SER ASN GLN LYS ASN TYR LEU SEQRES 4 D 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 D 220 LEU VAL TYR PHE ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 D 220 ASP ARG PHE ILE GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 D 220 LEU THR ILE SER SER ALA GLN ALA GLU ASP LEU ALA ASP SEQRES 8 D 220 TYR PHE CYS GLN GLN TYR TYR SER THR PRO PRO THR PHE SEQRES 9 D 220 GLY ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA SEQRES 10 D 220 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 D 220 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 D 220 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 D 220 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 D 220 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 D 220 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 D 220 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 D 220 SER PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 E 225 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 E 225 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 E 225 PHE THR PHE THR ARG TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 E 225 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA THR ILE SER SEQRES 5 E 225 ASN GLY GLY SER TYR THR TYR TYR LEU ASP SER VAL LYS SEQRES 6 E 225 GLY ARG PHE THR LEU SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 E 225 LEU TYR LEU GLN MET SER SER LEU ARG SER GLU ASP THR SEQRES 8 E 225 ALA MET TYR TYR CYS ALA ARG ARG GLU GLY GLY GLN ALA SEQRES 9 E 225 GLY PRO ALA TRP PHE VAL TYR TRP GLY GLN GLY THR LEU SEQRES 10 E 225 VAL THR VAL SER ALA ALA LYS THR THR PRO PRO SER VAL SEQRES 11 E 225 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 E 225 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 E 225 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 E 225 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 E 225 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 E 225 THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 E 225 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 18 E 225 ARG ASP CYS GLY SEQRES 1 F 18 LEU VAL ALA THR SER VAL ASN SER VAL THR GLY ILE ARG SEQRES 2 F 18 ILE GLU ASP LEU PRO HET A2G G 1 14 HET GAL G 2 11 HET SIA G 3 20 HET SIA G 4 20 HET A2G H 1 14 HET GAL H 2 11 HET SIA H 3 20 HET SIA H 4 20 HET PO4 A 301 5 HET GOL A 302 6 HET GOL A 303 6 HET GOL B 301 6 HET GOL B 302 6 HET PO4 D 301 5 HET PO4 D 302 5 HET GOL D 303 6 HET GOL D 304 6 HET GOL D 305 6 HET PO4 E 301 5 HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 A2G 2(C8 H15 N O6) FORMUL 7 GAL 2(C6 H12 O6) FORMUL 7 SIA 4(C11 H19 N O9) FORMUL 9 PO4 4(O4 P 3-) FORMUL 10 GOL 7(C3 H8 O3) FORMUL 20 HOH *21(H2 O) HELIX 1 AA1 GLN A 85 LEU A 89 5 5 HELIX 2 AA2 SER A 127 THR A 132 1 6 HELIX 3 AA3 LYS A 189 HIS A 195 1 7 HELIX 4 AA4 THR B 28 TYR B 32 5 5 HELIX 5 AA5 ASP B 62 LYS B 65 5 4 HELIX 6 AA6 SER B 165 SER B 167 5 3 HELIX 7 AA7 GLN D 85 LEU D 89 5 5 HELIX 8 AA8 SER D 127 SER D 133 1 7 HELIX 9 AA9 LYS D 189 ARG D 194 1 6 HELIX 10 AB1 ARG E 87 THR E 91 5 5 SHEET 1 AA1 4 MET A 4 SER A 7 0 SHEET 2 AA1 4 VAL A 19 SER A 25 -1 O LYS A 24 N THR A 5 SHEET 3 AA1 4 ASP A 76 ILE A 81 -1 O ILE A 81 N VAL A 19 SHEET 4 AA1 4 PHE A 68 SER A 73 -1 N SER A 71 O THR A 78 SHEET 1 AA2 6 SER A 10 MET A 13 0 SHEET 2 AA2 6 THR A 108 LEU A 112 1 O GLU A 111 N LEU A 11 SHEET 3 AA2 6 ASP A 91 GLN A 96 -1 N TYR A 92 O THR A 108 SHEET 4 AA2 6 LEU A 39 GLN A 44 -1 N ALA A 40 O GLN A 95 SHEET 5 AA2 6 LYS A 51 TYR A 55 -1 O LYS A 51 N GLN A 43 SHEET 6 AA2 6 THR A 59 ARG A 60 -1 O THR A 59 N TYR A 55 SHEET 1 AA3 4 SER A 10 MET A 13 0 SHEET 2 AA3 4 THR A 108 LEU A 112 1 O GLU A 111 N LEU A 11 SHEET 3 AA3 4 ASP A 91 GLN A 96 -1 N TYR A 92 O THR A 108 SHEET 4 AA3 4 THR A 103 PHE A 104 -1 O THR A 103 N GLN A 96 SHEET 1 AA4 2 LEU A 30 ASN A 31 0 SHEET 2 AA4 2 LYS A 36 ASN A 37 -1 O LYS A 36 N ASN A 31 SHEET 1 AA5 4 THR A 120 PHE A 124 0 SHEET 2 AA5 4 GLY A 135 PHE A 145 -1 O VAL A 139 N PHE A 124 SHEET 3 AA5 4 TYR A 179 THR A 188 -1 O MET A 181 N LEU A 142 SHEET 4 AA5 4 VAL A 165 TRP A 169 -1 N LEU A 166 O THR A 184 SHEET 1 AA6 4 SER A 159 ARG A 161 0 SHEET 2 AA6 4 ASN A 151 ILE A 156 -1 N TRP A 154 O ARG A 161 SHEET 3 AA6 4 SER A 197 HIS A 204 -1 O GLU A 201 N LYS A 153 SHEET 4 AA6 4 SER A 207 ASN A 216 -1 O LYS A 213 N CYS A 200 SHEET 1 AA7 4 GLN B 3 SER B 7 0 SHEET 2 AA7 4 LEU B 18 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 AA7 4 THR B 78 MET B 83 -1 O LEU B 79 N CYS B 22 SHEET 4 AA7 4 PHE B 68 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 AA8 6 LEU B 11 VAL B 12 0 SHEET 2 AA8 6 THR B 116 VAL B 120 1 O THR B 119 N VAL B 12 SHEET 3 AA8 6 ALA B 92 ARG B 99 -1 N TYR B 94 O THR B 116 SHEET 4 AA8 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 95 SHEET 5 AA8 6 LEU B 45 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA8 6 THR B 58 TYR B 60 -1 O TYR B 59 N THR B 50 SHEET 1 AA9 4 LEU B 11 VAL B 12 0 SHEET 2 AA9 4 THR B 116 VAL B 120 1 O THR B 119 N VAL B 12 SHEET 3 AA9 4 ALA B 92 ARG B 99 -1 N TYR B 94 O THR B 116 SHEET 4 AA9 4 PHE B 109 TRP B 112 -1 O TYR B 111 N ARG B 98 SHEET 1 AB1 4 SER B 129 LEU B 133 0 SHEET 2 AB1 4 MET B 144 TYR B 154 -1 O LYS B 152 N SER B 129 SHEET 3 AB1 4 LEU B 183 PRO B 193 -1 O VAL B 190 N LEU B 147 SHEET 4 AB1 4 VAL B 172 GLN B 180 -1 N GLN B 180 O LEU B 183 SHEET 1 AB2 3 THR B 160 TRP B 163 0 SHEET 2 AB2 3 THR B 203 HIS B 208 -1 O ASN B 205 N THR B 162 SHEET 3 AB2 3 THR B 213 LYS B 218 -1 O THR B 213 N HIS B 208 SHEET 1 AB3 4 MET D 4 SER D 7 0 SHEET 2 AB3 4 VAL D 19 SER D 25 -1 O LYS D 24 N THR D 5 SHEET 3 AB3 4 ASP D 76 ILE D 81 -1 O ILE D 81 N VAL D 19 SHEET 4 AB3 4 PHE D 68 SER D 73 -1 N SER D 71 O THR D 78 SHEET 1 AB4 6 SER D 10 MET D 13 0 SHEET 2 AB4 6 THR D 108 LEU D 112 1 O LYS D 109 N LEU D 11 SHEET 3 AB4 6 ASP D 91 GLN D 96 -1 N TYR D 92 O THR D 108 SHEET 4 AB4 6 LEU D 39 GLN D 44 -1 N TYR D 42 O PHE D 93 SHEET 5 AB4 6 LYS D 51 TYR D 55 -1 O VAL D 54 N TRP D 41 SHEET 6 AB4 6 THR D 59 ARG D 60 -1 O THR D 59 N TYR D 55 SHEET 1 AB5 4 SER D 10 MET D 13 0 SHEET 2 AB5 4 THR D 108 LEU D 112 1 O LYS D 109 N LEU D 11 SHEET 3 AB5 4 ASP D 91 GLN D 96 -1 N TYR D 92 O THR D 108 SHEET 4 AB5 4 THR D 103 PHE D 104 -1 O THR D 103 N GLN D 96 SHEET 1 AB6 4 THR D 120 PHE D 124 0 SHEET 2 AB6 4 GLY D 135 PHE D 145 -1 O PHE D 141 N SER D 122 SHEET 3 AB6 4 TYR D 179 THR D 188 -1 O MET D 181 N LEU D 142 SHEET 4 AB6 4 VAL D 165 TRP D 169 -1 N LEU D 166 O THR D 184 SHEET 1 AB7 4 SER D 159 ARG D 161 0 SHEET 2 AB7 4 VAL D 152 ILE D 156 -1 N ILE D 156 O SER D 159 SHEET 3 AB7 4 SER D 197 ALA D 202 -1 O GLU D 201 N LYS D 153 SHEET 4 AB7 4 ILE D 211 ASN D 216 -1 O LYS D 213 N CYS D 200 SHEET 1 AB8 4 GLN E 3 SER E 7 0 SHEET 2 AB8 4 LEU E 18 SER E 25 -1 O SER E 21 N SER E 7 SHEET 3 AB8 4 THR E 78 MET E 83 -1 O MET E 83 N LEU E 18 SHEET 4 AB8 4 PHE E 68 ASP E 73 -1 N ASP E 73 O THR E 78 SHEET 1 AB9 6 GLY E 10 VAL E 12 0 SHEET 2 AB9 6 THR E 116 VAL E 120 1 O THR E 119 N GLY E 10 SHEET 3 AB9 6 ALA E 92 ARG E 98 -1 N TYR E 94 O THR E 116 SHEET 4 AB9 6 MET E 34 GLN E 39 -1 N VAL E 37 O TYR E 95 SHEET 5 AB9 6 LEU E 45 ILE E 51 -1 O VAL E 48 N TRP E 36 SHEET 6 AB9 6 THR E 58 TYR E 60 -1 O TYR E 59 N THR E 50 SHEET 1 AC1 4 SER E 129 LEU E 133 0 SHEET 2 AC1 4 MET E 144 TYR E 154 -1 O LEU E 150 N TYR E 131 SHEET 3 AC1 4 LEU E 183 PRO E 193 -1 O VAL E 190 N LEU E 147 SHEET 4 AC1 4 VAL E 172 THR E 174 -1 N HIS E 173 O SER E 189 SHEET 1 AC2 4 SER E 129 LEU E 133 0 SHEET 2 AC2 4 MET E 144 TYR E 154 -1 O LEU E 150 N TYR E 131 SHEET 3 AC2 4 LEU E 183 PRO E 193 -1 O VAL E 190 N LEU E 147 SHEET 4 AC2 4 VAL E 178 GLN E 180 -1 N GLN E 180 O LEU E 183 SHEET 1 AC3 3 THR E 160 TRP E 163 0 SHEET 2 AC3 3 THR E 203 HIS E 208 -1 O ASN E 205 N THR E 162 SHEET 3 AC3 3 THR E 213 LYS E 218 -1 O LYS E 217 N CYS E 204 SSBOND 1 CYS A 23 CYS A 94 1555 1555 2.03 SSBOND 2 CYS A 140 CYS A 200 1555 1555 2.03 SSBOND 3 CYS A 220 CYS B 224 1555 1555 2.03 SSBOND 4 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 5 CYS B 149 CYS B 204 1555 1555 2.03 SSBOND 6 CYS D 23 CYS D 94 1555 1555 2.03 SSBOND 7 CYS D 140 CYS D 200 1555 1555 2.03 SSBOND 8 CYS E 22 CYS E 96 1555 1555 2.03 SSBOND 9 CYS E 149 CYS E 204 1555 1555 2.03 LINK OG1 THR C 76 C1 A2G G 1 1555 1555 1.44 LINK OG1 THR F 76 C1 A2G H 1 1555 1555 1.46 LINK O3 A2G G 1 C1 GAL G 2 1555 1555 1.45 LINK O6 A2G G 1 C2 SIA G 4 1555 1555 1.44 LINK O3 GAL G 2 C2 SIA G 3 1555 1555 1.44 LINK O3 A2G H 1 C1 GAL H 2 1555 1555 1.44 LINK O6 A2G H 1 C2 SIA H 4 1555 1555 1.44 LINK O3 GAL H 2 C2 SIA H 3 1555 1555 1.44 CISPEP 1 SER A 7 PRO A 8 0 -10.45 CISPEP 2 THR A 100 PRO A 101 0 4.63 CISPEP 3 TYR A 146 PRO A 147 0 3.39 CISPEP 4 PHE B 155 PRO B 156 0 -6.04 CISPEP 5 GLU B 157 PRO B 158 0 -2.95 CISPEP 6 TRP B 197 PRO B 198 0 3.58 CISPEP 7 SER D 7 PRO D 8 0 -5.70 CISPEP 8 THR D 100 PRO D 101 0 -1.32 CISPEP 9 TYR D 146 PRO D 147 0 3.46 CISPEP 10 PHE E 155 PRO E 156 0 -9.84 CISPEP 11 GLU E 157 PRO E 158 0 10.35 CISPEP 12 TRP E 197 PRO E 198 0 2.24 CRYST1 43.100 42.960 221.080 90.00 91.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023202 0.000000 0.000553 0.00000 SCALE2 0.000000 0.023277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004525 0.00000