HEADER HYDROLASE 05-JUN-20 7C9B TITLE CRYSTAL STRUCTURE OF DIPEPTIDASE-E FROM XENOPUS LAEVIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-ASPARTYL DIPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASP-SPECIFIC DIPEPTIDASE,DIPEPTIDASE E; COMPND 5 EC: 3.4.13.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: AAD-A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PST50TR KEYWDS PEPTIDASE-E, ASPARTYL DIPEPTIDASE, ALPHA-ASPARTYL DIPEPTIDASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR,R.SINGH,R.D.MAKDE REVDAT 5 29-NOV-23 7C9B 1 REMARK REVDAT 4 16-FEB-22 7C9B 1 JRNL REVDAT 3 08-SEP-21 7C9B 1 JRNL REVDAT 2 18-AUG-21 7C9B 1 TITLE COMPND JRNL REMARK REVDAT 2 2 1 SHEET LINK SITE ATOM REVDAT 1 09-JUN-21 7C9B 0 JRNL AUTH A.KUMAR,R.SINGH,B.GHOSH,R.D.MAKDE JRNL TITL CRYSTAL STRUCTURE OF ASPARTYL DIPEPTIDASE FROM XENOPUS JRNL TITL 2 LAEVIS REVEALED LIGAND BINDING INDUCED LOOP ORDERING AND JRNL TITL 3 CATALYTIC TRIAD ASSEMBLY. JRNL REF PROTEINS V. 90 299 2022 JRNL REFN ESSN 1097-0134 JRNL PMID 34431561 JRNL DOI 10.1002/PROT.26220 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 42936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8400 - 3.4500 0.99 2921 154 0.1555 0.1691 REMARK 3 2 3.4500 - 2.7400 0.99 2833 139 0.1857 0.2237 REMARK 3 3 2.7400 - 2.3900 0.99 2843 128 0.1937 0.2459 REMARK 3 4 2.3900 - 2.1800 0.99 2796 167 0.1878 0.1976 REMARK 3 5 2.1700 - 2.0200 0.99 2779 151 0.1960 0.2438 REMARK 3 6 2.0200 - 1.9000 0.98 2812 127 0.2077 0.2423 REMARK 3 7 1.9000 - 1.8000 0.98 2761 152 0.2172 0.2617 REMARK 3 8 1.8000 - 1.7300 0.98 2701 158 0.2187 0.2642 REMARK 3 9 1.7300 - 1.6600 0.98 2786 161 0.2269 0.2725 REMARK 3 10 1.6600 - 1.6000 0.97 2713 142 0.2127 0.2449 REMARK 3 11 1.6000 - 1.5500 0.97 2733 145 0.2235 0.3034 REMARK 3 12 1.5500 - 1.5100 0.97 2711 153 0.2360 0.2161 REMARK 3 13 1.5100 - 1.4700 0.97 2721 156 0.2440 0.2981 REMARK 3 14 1.4700 - 1.4300 0.90 2529 134 0.2615 0.2883 REMARK 3 15 1.4300 - 1.4000 0.76 2132 98 0.2752 0.3250 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1914 REMARK 3 ANGLE : 1.342 2601 REMARK 3 CHIRALITY : 0.116 287 REMARK 3 PLANARITY : 0.013 343 REMARK 3 DIHEDRAL : 6.080 262 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9632 -3.9478 22.4523 REMARK 3 T TENSOR REMARK 3 T11: 0.3120 T22: 0.1918 REMARK 3 T33: 0.1498 T12: 0.0089 REMARK 3 T13: -0.1288 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.1558 L22: 1.4461 REMARK 3 L33: 1.9871 L12: -0.1496 REMARK 3 L13: 0.8757 L23: 0.1519 REMARK 3 S TENSOR REMARK 3 S11: -0.1270 S12: -0.0916 S13: 0.0728 REMARK 3 S21: 0.1797 S22: -0.0330 S23: 0.0431 REMARK 3 S31: -0.5229 S32: -0.1519 S33: 0.0149 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9766 -3.9302 22.6473 REMARK 3 T TENSOR REMARK 3 T11: 0.3434 T22: 0.3087 REMARK 3 T33: 0.2379 T12: -0.0565 REMARK 3 T13: -0.1745 T23: 0.0501 REMARK 3 L TENSOR REMARK 3 L11: 0.4721 L22: 0.4812 REMARK 3 L33: 1.3644 L12: 0.0088 REMARK 3 L13: 0.0614 L23: 0.5610 REMARK 3 S TENSOR REMARK 3 S11: -0.1915 S12: 0.0118 S13: 0.2671 REMARK 3 S21: 0.1793 S22: -0.0619 S23: -0.1783 REMARK 3 S31: -0.4980 S32: 0.4185 S33: -0.0879 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6862 -13.9381 15.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1906 REMARK 3 T33: 0.1192 T12: 0.0064 REMARK 3 T13: -0.0707 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.6865 L22: 0.6299 REMARK 3 L33: 1.2655 L12: -0.0076 REMARK 3 L13: -0.0103 L23: 0.1714 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: 0.0015 S13: -0.0454 REMARK 3 S21: 0.0961 S22: -0.0335 S23: -0.0684 REMARK 3 S31: 0.0570 S32: 0.2136 S33: 0.0228 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5574 -3.5125 10.5446 REMARK 3 T TENSOR REMARK 3 T11: 0.2750 T22: 0.2837 REMARK 3 T33: 0.1392 T12: 0.0723 REMARK 3 T13: -0.0980 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.0740 L22: 1.6733 REMARK 3 L33: 3.2176 L12: -0.2428 REMARK 3 L13: 1.1621 L23: -1.5063 REMARK 3 S TENSOR REMARK 3 S11: -0.0721 S12: 0.1693 S13: 0.2158 REMARK 3 S21: -0.1564 S22: -0.0477 S23: 0.1194 REMARK 3 S31: -0.5212 S32: -0.2259 S33: 0.0783 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2215 -3.4599 12.6346 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.3806 REMARK 3 T33: 0.1826 T12: 0.1440 REMARK 3 T13: -0.0874 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 1.6311 L22: 0.8689 REMARK 3 L33: 6.1125 L12: 0.0392 REMARK 3 L13: 1.9747 L23: -0.3450 REMARK 3 S TENSOR REMARK 3 S11: -0.1133 S12: 0.0368 S13: 0.0863 REMARK 3 S21: 0.0527 S22: 0.0058 S23: 0.0016 REMARK 3 S31: -0.4299 S32: -0.3822 S33: 0.1205 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5663 0.8827 16.9764 REMARK 3 T TENSOR REMARK 3 T11: 0.4007 T22: 0.6696 REMARK 3 T33: 0.1652 T12: 0.3693 REMARK 3 T13: -0.1917 T23: -0.1331 REMARK 3 L TENSOR REMARK 3 L11: 0.3010 L22: 0.3850 REMARK 3 L33: 1.4586 L12: -0.0799 REMARK 3 L13: 0.5419 L23: -0.5650 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: 0.0104 S13: 0.0951 REMARK 3 S21: -0.0265 S22: 0.0665 S23: 0.0214 REMARK 3 S31: -0.3109 S32: -0.2718 S33: 0.3225 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : X-RAY MIRROR, MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION MAR 15, 2019 REMARK 200 BUILT=20190315 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 41.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 25.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6A4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM BIS-TRIS, 200 MM NANO3, 10 MM REMARK 280 CACL2, 30% PEG 3350, PH 7.0, MICROBATCH, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.88750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.88750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 167 REMARK 465 GLY A 168 REMARK 465 ASN A 169 REMARK 465 SER A 170 REMARK 465 LYS A 171 REMARK 465 HIS A 172 REMARK 465 MET A 173 REMARK 465 HIS A 241 REMARK 465 SER A 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 125 -111.45 54.23 REMARK 500 ALA A 151 -144.54 -122.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 92 O REMARK 620 2 ASP A 140 OD1 116.9 REMARK 620 3 ASP A 140 OD2 82.3 50.1 REMARK 620 4 GLU A 175 OE2 133.8 18.3 57.7 REMARK 620 5 HOH A 405 O 74.5 168.3 133.5 150.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 109 O REMARK 620 2 HOH A 511 O 127.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 125 OG REMARK 620 2 ASP A 140 OD2 153.8 REMARK 620 3 HOH A 405 O 50.1 104.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 132 OG1 REMARK 620 2 SER A 134 O 59.8 REMARK 620 3 HOH A 523 O 112.0 83.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 138 OG1 REMARK 620 2 HOH A 497 O 154.1 REMARK 620 N 1 DBREF 7C9B A 1 242 UNP Q91642 PEPE_XENLA 1 242 SEQRES 1 A 242 MET MET THR MET ARG ARG HIS LEU LEU LEU VAL SER ASN SEQRES 2 A 242 SER THR LEU HIS GLY GLY GLY TYR LEU GLU HIS CYS GLN SEQRES 3 A 242 GLU HIS ILE LEU LYS PHE LEU GLY ALA GLN VAL LYS ARG SEQRES 4 A 242 VAL LEU PHE ILE PRO TYR ALA LEU HIS ASP ARG ASP ALA SEQRES 5 A 242 TYR ALA LYS THR ALA ARG GLN LYS PHE GLU ALA LEU GLY SEQRES 6 A 242 TYR GLY LEU ASP SER VAL HIS GLU SER PRO ASP PRO VAL SEQRES 7 A 242 ASP ALA VAL LYS LYS ALA GLU ALA ILE PHE ILE GLY GLY SEQRES 8 A 242 GLY ASN THR PHE ARG LEU LEU LYS ALA LEU TYR ASP ASN SEQRES 9 A 242 ASP LEU ILE ALA ALA ILE ARG LYS ARG VAL LEU GLU ASP SEQRES 10 A 242 GLY VAL PRO TYR ILE GLY SER SER ALA GLY THR ASN VAL SEQRES 11 A 242 ALA THR ILE SER ILE ASN THR THR ASN ASP MET PRO ILE SEQRES 12 A 242 VAL TYR PRO PRO SER LEU LYS ALA LEU GLU LEU VAL PRO SEQRES 13 A 242 PHE ASN ILE ASN PRO HIS TYR LEU ASP PRO ASP GLY ASN SEQRES 14 A 242 SER LYS HIS MET GLY GLU THR ARG GLU GLN ARG ILE THR SEQRES 15 A 242 GLN TYR HIS GLU GLU HIS ASP THR PRO PRO VAL LEU GLY SEQRES 16 A 242 LEU ARG GLU GLY CYS PHE LEU LEU VAL GLU GLY ASP LYS SEQRES 17 A 242 ALA THR LEU LEU GLY ILE THR ARG ALA ARG LEU PHE LEU SEQRES 18 A 242 ARG GLY LYS ASN PRO THR GLU HIS GLU PRO GLY HIS ASP SEQRES 19 A 242 PHE SER PHE LEU LEU GLY HIS SER HET CA A 301 1 HET NA A 302 2 HET NA A 303 1 HET NA A 304 1 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 2 CA CA 2+ FORMUL 3 NA 3(NA 1+) FORMUL 6 HOH *197(H2 O) HELIX 1 AA1 LEU A 22 HIS A 24 5 3 HELIX 2 AA2 CYS A 25 GLY A 34 1 10 HELIX 3 AA3 ASP A 49 LEU A 64 1 16 HELIX 4 AA4 HIS A 72 SER A 74 5 3 HELIX 5 AA5 ASP A 76 ALA A 84 1 9 HELIX 6 AA6 ASN A 93 ASN A 104 1 12 HELIX 7 AA7 ASP A 105 GLU A 116 1 12 HELIX 8 AA8 SER A 125 VAL A 130 1 6 HELIX 9 AA9 THR A 176 GLU A 187 1 12 HELIX 10 AB1 PHE A 235 LEU A 239 5 5 SHEET 1 AA1 7 GLY A 67 SER A 70 0 SHEET 2 AA1 7 ARG A 39 ILE A 43 1 N PHE A 42 O ASP A 69 SHEET 3 AA1 7 ILE A 87 ILE A 89 1 O PHE A 88 N LEU A 41 SHEET 4 AA1 7 TYR A 121 SER A 124 1 O ILE A 122 N ILE A 87 SHEET 5 AA1 7 HIS A 7 VAL A 11 1 N VAL A 11 O GLY A 123 SHEET 6 AA1 7 CYS A 200 GLU A 205 -1 O VAL A 204 N LEU A 8 SHEET 7 AA1 7 LYS A 208 GLY A 213 -1 O LEU A 212 N PHE A 201 SHEET 1 AA2 4 ASN A 158 PRO A 161 0 SHEET 2 AA2 4 VAL A 193 LEU A 196 1 O LEU A 194 N ASN A 158 SHEET 3 AA2 4 ALA A 217 PHE A 220 -1 O ARG A 218 N GLY A 195 SHEET 4 AA2 4 THR A 227 HIS A 229 -1 O THR A 227 N LEU A 219 LINK O GLY A 92 NA A NA A 302 1555 1555 2.29 LINK O ALA A 109 NA NA A 304 1555 1555 2.90 LINK OG SER A 125 NA B NA A 302 1555 1555 3.04 LINK OG1 THR A 132 NA NA A 303 1555 1555 2.78 LINK O SER A 134 NA NA A 303 1555 1555 2.87 LINK OG1 THR A 138 CA CA A 301 1555 1555 3.13 LINK OD1 ASP A 140 NA A NA A 302 1555 1555 2.57 LINK OD2 ASP A 140 NA A NA A 302 1555 1555 2.53 LINK OD2 ASP A 140 NA B NA A 302 1555 1555 3.05 LINK OE2 GLU A 175 NA A NA A 302 1555 2555 3.00 LINK CA CA A 301 O HOH A 497 1555 1555 3.06 LINK NA A NA A 302 O HOH A 405 1555 1555 2.57 LINK NA B NA A 302 O HOH A 405 1555 1555 2.88 LINK NA NA A 303 O HOH A 523 1555 1555 2.80 LINK NA NA A 304 O HOH A 511 1555 1555 2.80 CRYST1 83.775 40.900 74.221 90.00 116.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011937 0.000000 0.005873 0.00000 SCALE2 0.000000 0.024450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015016 0.00000