HEADER TRANSCRIPTION 06-JUN-20 7C9O TITLE CRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- TITLE 2 YC2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN HD1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN CONSTANS-LIKE,PROTEIN HEADING DATE 1,OSHD1,PROTEIN COMPND 5 PHOTOPERIOD SENSITIVITY 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: OSNF-YB11,PROTEIN DAYS TO HEADING 8,PROTEIN HEADING DATE 5, COMPND 11 TRANSCRIPTIONAL ACTIVATOR HAP3H,OSHAP3H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-2; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: OSNF-YC2,TRANSCRIPTIONAL ACTIVATOR HAP5C,OSHAP5C; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (25-MER); COMPND 20 CHAIN: D; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: DNA (25-MER); COMPND 24 CHAIN: E; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: HD1, SE1, OS06G0275000, LOC_OS06G16370, P0038C05.23, SOURCE 6 P0676F10.34; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 12 ORGANISM_COMMON: RICE; SOURCE 13 ORGANISM_TAXID: 39947; SOURCE 14 GENE: HD5, DTH8, GHD8, HAP3H, NFYB11, OS08G0174500, LOC_OS08G07740; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 20 ORGANISM_COMMON: RICE; SOURCE 21 ORGANISM_TAXID: 39947; SOURCE 22 GENE: NFYC2, HAP5C, OS03G0251350, LOC_OS03G14669; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 26 MOL_ID: 4; SOURCE 27 SYNTHETIC: YES; SOURCE 28 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 29 ORGANISM_TAXID: 4530; SOURCE 30 MOL_ID: 5; SOURCE 31 SYNTHETIC: YES; SOURCE 32 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 33 ORGANISM_TAXID: 4530 KEYWDS PHOTOPERIODIC FLOWERING, CCT FAMILY, NF-CCT COMPLEX, SPECIFIC DNA KEYWDS 2 RECOGNITION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.SHEN,H.LIU,Z.GUAN,Y.XING,P.YIN REVDAT 3 29-NOV-23 7C9O 1 REMARK REVDAT 2 18-NOV-20 7C9O 1 JRNL REVDAT 1 09-SEP-20 7C9O 0 JRNL AUTH C.SHEN,H.LIU,Z.GUAN,J.YAN,T.ZHENG,W.YAN,C.WU,Q.ZHANG,P.YIN, JRNL AUTH 2 Y.XING JRNL TITL STRUCTURAL INSIGHT INTO DNA RECOGNITION BY CCT/NF-YB/YC JRNL TITL 2 COMPLEXES IN PLANT PHOTOPERIODIC FLOWERING. JRNL REF PLANT CELL V. 32 3469 2020 JRNL REFN ESSN 1532-298X JRNL PMID 32843433 JRNL DOI 10.1105/TPC.20.00067 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14RC3_3206 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 21983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0200 - 5.1000 0.99 2717 139 0.1638 0.1900 REMARK 3 2 5.1000 - 4.0500 1.00 2623 152 0.1567 0.1907 REMARK 3 3 4.0500 - 3.5400 1.00 2623 135 0.1949 0.1883 REMARK 3 4 3.5400 - 3.2100 0.99 2627 120 0.2161 0.2745 REMARK 3 5 3.2100 - 2.9800 0.99 2573 129 0.2745 0.3094 REMARK 3 6 2.9800 - 2.8100 0.99 2606 106 0.2854 0.3346 REMARK 3 7 2.8100 - 2.6700 0.99 2575 140 0.2776 0.3221 REMARK 3 8 2.6700 - 2.5500 0.99 2576 142 0.2998 0.2985 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.305 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.673 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2880 REMARK 3 ANGLE : 1.094 4086 REMARK 3 CHIRALITY : 0.055 458 REMARK 3 PLANARITY : 0.007 346 REMARK 3 DIHEDRAL : 33.168 1178 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -57.3189 10.9427 -4.4640 REMARK 3 T TENSOR REMARK 3 T11: 0.6978 T22: 0.3621 REMARK 3 T33: 0.3648 T12: -0.1325 REMARK 3 T13: -0.0224 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 1.7961 L22: 4.9642 REMARK 3 L33: 1.1798 L12: 2.1807 REMARK 3 L13: -0.5000 L23: -0.6768 REMARK 3 S TENSOR REMARK 3 S11: -0.2556 S12: 0.2554 S13: -0.0645 REMARK 3 S21: -0.7101 S22: 0.2221 S23: -0.3842 REMARK 3 S31: -0.0529 S32: 0.1672 S33: 0.0294 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22041 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 68.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G92 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CITRATE, SODIUM REMARK 280 ACETATE TRIHYDRATE, MAGNESIUM ACETATE TETRAHYDRATE, GLYCINE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.97333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.98667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.98667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.97333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 321 REMARK 465 MET A 322 REMARK 465 SER A 323 REMARK 465 GLY A 324 REMARK 465 PRO A 325 REMARK 465 SER A 326 REMARK 465 LEU A 327 REMARK 465 GLN A 328 REMARK 465 MET A 329 REMARK 465 SER A 330 REMARK 465 LEU A 331 REMARK 465 HIS A 332 REMARK 465 PHE A 333 REMARK 465 SER A 334 REMARK 465 ARG A 380 REMARK 465 SER A 381 REMARK 465 ASP A 382 REMARK 465 VAL A 383 REMARK 465 GLN A 384 REMARK 465 ILE A 385 REMARK 465 GLU A 386 REMARK 465 VAL A 387 REMARK 465 MET B 53 REMARK 465 SER B 54 REMARK 465 PRO B 55 REMARK 465 ALA B 56 REMARK 465 LYS B 57 REMARK 465 GLU B 58 REMARK 465 ARG B 144 REMARK 465 TYR B 145 REMARK 465 ARG B 146 REMARK 465 GLU B 147 REMARK 465 HIS C 165 REMARK 465 MET C 166 REMARK 465 GLN C 167 REMARK 465 GLU C 168 REMARK 465 ALA C 169 REMARK 465 GLU C 170 REMARK 465 ARG C 171 REMARK 465 ALA C 172 REMARK 465 SER C 173 REMARK 465 ALA C 174 REMARK 465 SER C 175 REMARK 465 ASP C 176 REMARK 465 PHE C 177 REMARK 465 LYS C 178 REMARK 465 ASN C 179 REMARK 465 GLU C 260 REMARK 465 GLU C 261 REMARK 465 ALA C 262 REMARK 465 LYS C 263 REMARK 465 GLU C 264 REMARK 465 GLU C 265 REMARK 465 PRO C 266 REMARK 465 GLY C 267 REMARK 465 SER C 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS C 180 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DG E 11 O HOH E 101 1.81 REMARK 500 OP1 DG E 21 O HOH E 102 1.88 REMARK 500 OP2 DT E 10 O HOH E 103 1.98 REMARK 500 ND2 ASN C 230 O HOH C 301 2.04 REMARK 500 O ALA B 133 O HOH B 201 2.09 REMARK 500 OD1 ASP B 121 O HOH B 202 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT D 10 O3' DT D 10 C3' -0.046 REMARK 500 DG E 6 O3' DG E 6 C3' -0.042 REMARK 500 DC E 9 O3' DC E 9 C3' -0.050 REMARK 500 DT E 10 O3' DT E 10 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 5 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 369 58.97 -108.24 REMARK 500 GLN C 181 -76.47 -117.15 REMARK 500 ARG C 198 -81.01 -114.72 REMARK 500 PRO C 258 88.94 -64.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 7C9O A 323 387 UNP Q9FDX8 HD1_ORYSJ 311 375 DBREF 7C9O B 54 147 UNP Q0J7P4 HD5_ORYSJ 54 147 DBREF 7C9O C 167 268 UNP A6BLW4 NFYC2_ORYSJ 55 156 DBREF 7C9O D 1 25 PDB 7C9O 7C9O 1 25 DBREF 7C9O E 1 25 PDB 7C9O 7C9O 1 25 SEQADV 7C9O HIS A 321 UNP Q9FDX8 EXPRESSION TAG SEQADV 7C9O MET A 322 UNP Q9FDX8 EXPRESSION TAG SEQADV 7C9O MET B 53 UNP Q0J7P4 INITIATING METHIONINE SEQADV 7C9O ALA B 86 UNP Q0J7P4 SER 86 CONFLICT SEQADV 7C9O HIS C 165 UNP A6BLW4 EXPRESSION TAG SEQADV 7C9O MET C 166 UNP A6BLW4 EXPRESSION TAG SEQRES 1 A 67 HIS MET SER GLY PRO SER LEU GLN MET SER LEU HIS PHE SEQRES 2 A 67 SER SER MET ASP ARG GLU ALA ARG VAL LEU ARG TYR ARG SEQRES 3 A 67 GLU LYS LYS LYS ALA ARG LYS PHE GLU LYS THR ILE ARG SEQRES 4 A 67 TYR GLU THR ARG LYS ALA TYR ALA GLU ALA ARG PRO ARG SEQRES 5 A 67 ILE LYS GLY ARG PHE ALA LYS ARG SER ASP VAL GLN ILE SEQRES 6 A 67 GLU VAL SEQRES 1 B 95 MET SER PRO ALA LYS GLU GLN ASP ARG PHE LEU PRO ILE SEQRES 2 B 95 ALA ASN VAL SER ARG ILE MET LYS ARG SER LEU PRO ALA SEQRES 3 B 95 ASN ALA LYS ILE SER LYS GLU ALA LYS GLU THR VAL GLN SEQRES 4 B 95 GLU CYS VAL SER GLU PHE ILE SER PHE VAL THR GLY GLU SEQRES 5 B 95 ALA SER ASP LYS CYS GLN ARG GLU LYS ARG LYS THR ILE SEQRES 6 B 95 ASN GLY ASP ASP LEU LEU TRP ALA MET THR THR LEU GLY SEQRES 7 B 95 PHE GLU ALA TYR VAL GLY PRO LEU LYS SER TYR LEU ASN SEQRES 8 B 95 ARG TYR ARG GLU SEQRES 1 C 104 HIS MET GLN GLU ALA GLU ARG ALA SER ALA SER ASP PHE SEQRES 2 C 104 LYS ASN HIS GLN LEU PRO LEU ALA ARG ILE LYS LYS ILE SEQRES 3 C 104 MET LYS ALA ASP GLU ASP VAL ARG MET ILE SER ALA GLU SEQRES 4 C 104 ALA PRO VAL LEU PHE ALA LYS ALA CYS GLU LEU PHE ILE SEQRES 5 C 104 LEU GLU LEU THR ILE ARG SER TRP LEU HIS ALA GLU GLU SEQRES 6 C 104 ASN LYS ARG ARG THR LEU GLN ARG ASN ASP VAL ALA ALA SEQRES 7 C 104 ALA ILE ALA ARG THR ASP VAL PHE ASP PHE LEU VAL ASP SEQRES 8 C 104 ILE VAL PRO ARG GLU GLU ALA LYS GLU GLU PRO GLY SER SEQRES 1 D 25 DA DA DC DT DC DA DC DT DC DT DC DA DA SEQRES 2 D 25 DC DC DA DC DA DG DC DT DC DG DA DT SEQRES 1 E 25 DT DT DA DT DC DG DA DG DC DT DG DT DG SEQRES 2 E 25 DG DT DT DG DA DG DA DG DT DG DA DG FORMUL 6 HOH *16(H2 O) HELIX 1 AA1 SER A 335 ALA A 351 1 17 HELIX 2 AA2 TYR A 360 ALA A 369 1 10 HELIX 3 AA3 PRO B 64 SER B 75 1 12 HELIX 4 AA4 SER B 83 GLU B 112 1 30 HELIX 5 AA5 ASN B 118 LEU B 129 1 12 HELIX 6 AA6 PHE B 131 ASN B 143 1 13 HELIX 7 AA7 PRO C 183 ALA C 193 1 11 HELIX 8 AA8 ALA C 202 ASN C 230 1 29 HELIX 9 AA9 GLN C 236 THR C 247 1 12 HELIX 10 AB1 ASP C 248 VAL C 254 5 7 SHEET 1 AA1 2 ARG A 372 ILE A 373 0 SHEET 2 AA1 2 ARG A 376 PHE A 377 -1 O ARG A 376 N ILE A 373 SHEET 1 AA2 2 LYS B 81 ILE B 82 0 SHEET 2 AA2 2 THR C 234 LEU C 235 1 O LEU C 235 N LYS B 81 SHEET 1 AA3 2 THR B 116 ILE B 117 0 SHEET 2 AA3 2 MET C 199 ILE C 200 1 O MET C 199 N ILE B 117 CRYST1 136.080 136.080 62.960 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007349 0.004243 0.000000 0.00000 SCALE2 0.000000 0.008485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015883 0.00000