HEADER TRANSFERASE/INHIBITOR 08-JUN-20 7CAJ TITLE CRYSTAL STRUCTURE OF SETDB1 TUDOR DOMAIN IN COMPLEXED WITH COMPOUND 2. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETDB1; COMPND 3 CHAIN: D, A; COMPND 4 SYNONYM: ERG-ASSOCIATED PROTEIN WITH SET DOMAIN,ESET,HISTONE H3-K9 COMPND 5 METHYLTRANSFERASE 4,H3-K9-HMTASE 4,LYSINE N-METHYLTRANSFERASE 1E,SET COMPND 6 DOMAIN BIFURCATED 1; COMPND 7 EC: 2.1.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETDB1, ESET, KIAA0067, KMT1E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPIGENETIC, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.P.GUO,X.LIANG,M.XIN,H.LUYI,W.CHENGYONG,S.Y.YANG REVDAT 3 29-NOV-23 7CAJ 1 REMARK REVDAT 2 14-APR-21 7CAJ 1 JRNL REVDAT 1 07-APR-21 7CAJ 0 JRNL AUTH Y.GUO,X.MAO,L.XIONG,A.XIA,J.YOU,G.LIN,C.WU,L.HUANG,Y.WANG, JRNL AUTH 2 S.YANG JRNL TITL STRUCTURE-GUIDED DISCOVERY OF A POTENT AND SELECTIVE JRNL TITL 2 CELL-ACTIVE INHIBITOR OF SETDB1 TUDOR DOMAIN. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 60 8760 2021 JRNL REFN ESSN 1521-3773 JRNL PMID 33511756 JRNL DOI 10.1002/ANIE.202017200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.9400 - 4.7291 0.99 2589 153 0.1769 0.2015 REMARK 3 2 4.7291 - 3.7564 1.00 2507 134 0.1495 0.2109 REMARK 3 3 3.7564 - 3.2823 1.00 2511 116 0.1935 0.2617 REMARK 3 4 3.2823 - 2.9826 1.00 2428 136 0.2284 0.3103 REMARK 3 5 2.9826 - 2.7690 1.00 2483 128 0.2400 0.3304 REMARK 3 6 2.7690 - 2.6059 1.00 2420 143 0.2374 0.3392 REMARK 3 7 2.6059 - 2.4754 1.00 2434 127 0.2277 0.2977 REMARK 3 8 2.4754 - 2.3677 1.00 2422 129 0.2243 0.3030 REMARK 3 9 2.3677 - 2.2766 1.00 2426 140 0.2342 0.3249 REMARK 3 10 2.2766 - 2.1981 0.97 2335 134 0.2404 0.3276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3534 REMARK 3 ANGLE : 1.262 4796 REMARK 3 CHIRALITY : 0.094 516 REMARK 3 PLANARITY : 0.008 588 REMARK 3 DIHEDRAL : 14.578 2064 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.2980 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6BHD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM FLUORIDE REMARK 280 20%PEG3350,PH6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.33900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.59800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.28350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.59800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.33900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.28350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 171 REMARK 465 SER D 172 REMARK 465 SER D 173 REMARK 465 HIS D 174 REMARK 465 HIS D 175 REMARK 465 HIS D 176 REMARK 465 HIS D 177 REMARK 465 HIS D 178 REMARK 465 HIS D 179 REMARK 465 SER D 180 REMARK 465 SER D 181 REMARK 465 GLY D 182 REMARK 465 GLU D 183 REMARK 465 ASN D 184 REMARK 465 LEU D 185 REMARK 465 TYR D 186 REMARK 465 PHE D 187 REMARK 465 GLN D 188 REMARK 465 GLY D 189 REMARK 465 GLY D 190 REMARK 465 GLU D 191 REMARK 465 THR D 403 REMARK 465 SER D 404 REMARK 465 SER D 405 REMARK 465 ALA D 406 REMARK 465 SER D 407 REMARK 465 ALA D 408 REMARK 465 LEU D 409 REMARK 465 GLU D 410 REMARK 465 GLY A 171 REMARK 465 SER A 172 REMARK 465 SER A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 SER A 180 REMARK 465 SER A 181 REMARK 465 GLY A 182 REMARK 465 GLU A 183 REMARK 465 ASN A 184 REMARK 465 LEU A 185 REMARK 465 TYR A 186 REMARK 465 PHE A 187 REMARK 465 GLN A 188 REMARK 465 GLY A 189 REMARK 465 GLY A 190 REMARK 465 GLU A 191 REMARK 465 THR A 403 REMARK 465 SER A 404 REMARK 465 SER A 405 REMARK 465 ALA A 406 REMARK 465 SER A 407 REMARK 465 ALA A 408 REMARK 465 LEU A 409 REMARK 465 GLU A 410 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 194 CE NZ REMARK 470 ARG D 209 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 233 CD CE NZ REMARK 470 ASN D 236 CG OD1 ND2 REMARK 470 LYS D 237 CG CD CE NZ REMARK 470 LYS D 257 CE NZ REMARK 470 ASP D 270 CG OD1 OD2 REMARK 470 GLN D 273 CG CD OE1 NE2 REMARK 470 LYS D 288 NZ REMARK 470 LYS D 290 CE NZ REMARK 470 GLN D 307 CD OE1 NE2 REMARK 470 LYS D 349 NZ REMARK 470 LYS D 364 CE NZ REMARK 470 LYS D 402 CE NZ REMARK 470 LYS A 194 CE NZ REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 233 CD CE NZ REMARK 470 ASN A 236 CG OD1 ND2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 257 CE NZ REMARK 470 ASP A 270 CG OD1 OD2 REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 470 LYS A 288 NZ REMARK 470 LYS A 290 CE NZ REMARK 470 GLN A 307 CD OE1 NE2 REMARK 470 LYS A 349 NZ REMARK 470 LYS A 364 CE NZ REMARK 470 LYS A 402 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR D 338 HZ2 LYS A 355 2455 1.38 REMARK 500 O THR D 338 NZ LYS A 355 2455 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR D 340 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER D 201 -3.03 84.82 REMARK 500 LYS D 211 -4.15 78.11 REMARK 500 LYS D 237 147.04 -178.94 REMARK 500 ASP D 256 42.56 -81.60 REMARK 500 ASP D 270 53.79 -93.64 REMARK 500 TYR D 340 -81.08 -37.77 REMARK 500 TRP D 358 112.17 -162.61 REMARK 500 SER A 201 -11.36 80.10 REMARK 500 LYS A 211 -5.96 78.99 REMARK 500 LYS A 237 73.59 64.08 REMARK 500 ASP A 250 49.49 -80.18 REMARK 500 ALA A 255 46.15 -75.55 REMARK 500 ASP A 256 -32.38 -134.64 REMARK 500 TYR A 340 -70.24 -43.93 REMARK 500 GLU A 369 146.28 -173.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA D 339 TYR D 340 -140.40 REMARK 500 LYS A 237 GLY A 238 146.91 REMARK 500 ALA A 339 TYR A 340 -133.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FNC D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FNC A 501 DBREF 7CAJ D 190 410 UNP Q15047 SETB1_HUMAN 190 410 DBREF 7CAJ A 190 410 UNP Q15047 SETB1_HUMAN 190 410 SEQADV 7CAJ GLY D 171 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ SER D 172 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ SER D 173 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS D 174 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS D 175 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS D 176 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS D 177 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS D 178 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS D 179 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ SER D 180 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ SER D 181 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ GLY D 182 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ GLU D 183 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ ASN D 184 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ LEU D 185 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ TYR D 186 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ PHE D 187 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ GLN D 188 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ GLY D 189 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ GLY A 171 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ SER A 172 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ SER A 173 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS A 174 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS A 175 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS A 176 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS A 177 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS A 178 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ HIS A 179 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ SER A 180 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ SER A 181 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ GLY A 182 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ GLU A 183 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ ASN A 184 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ LEU A 185 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ TYR A 186 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ PHE A 187 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ GLN A 188 UNP Q15047 EXPRESSION TAG SEQADV 7CAJ GLY A 189 UNP Q15047 EXPRESSION TAG SEQRES 1 D 240 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY GLU SEQRES 2 D 240 ASN LEU TYR PHE GLN GLY GLY GLU LEU SER LYS ASP GLY SEQRES 3 D 240 ASP LEU ILE VAL SER MET ARG ILE LEU GLY LYS LYS ARG SEQRES 4 D 240 THR LYS THR TRP HIS LYS GLY THR LEU ILE ALA ILE GLN SEQRES 5 D 240 THR VAL GLY PRO GLY LYS LYS TYR LYS VAL LYS PHE ASP SEQRES 6 D 240 ASN LYS GLY LYS SER LEU LEU SER GLY ASN HIS ILE ALA SEQRES 7 D 240 TYR ASP TYR HIS PRO PRO ALA ASP LYS LEU TYR VAL GLY SEQRES 8 D 240 SER ARG VAL VAL ALA LYS TYR LYS ASP GLY ASN GLN VAL SEQRES 9 D 240 TRP LEU TYR ALA GLY ILE VAL ALA GLU THR PRO ASN VAL SEQRES 10 D 240 LYS ASN LYS LEU ARG PHE LEU ILE PHE PHE ASP ASP GLY SEQRES 11 D 240 TYR ALA SER TYR VAL THR GLN SER GLU LEU TYR PRO ILE SEQRES 12 D 240 CYS ARG PRO LEU LYS LYS THR TRP GLU ASP ILE GLU ASP SEQRES 13 D 240 ILE SER CYS ARG ASP PHE ILE GLU GLU TYR VAL THR ALA SEQRES 14 D 240 TYR PRO ASN ARG PRO MET VAL LEU LEU LYS SER GLY GLN SEQRES 15 D 240 LEU ILE LYS THR GLU TRP GLU GLY THR TRP TRP LYS SER SEQRES 16 D 240 ARG VAL GLU GLU VAL ASP GLY SER LEU VAL ARG ILE LEU SEQRES 17 D 240 PHE LEU ASP ASP LYS ARG CYS GLU TRP ILE TYR ARG GLY SEQRES 18 D 240 SER THR ARG LEU GLU PRO MET PHE SER MET LYS THR SER SEQRES 19 D 240 SER ALA SER ALA LEU GLU SEQRES 1 A 240 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY GLU SEQRES 2 A 240 ASN LEU TYR PHE GLN GLY GLY GLU LEU SER LYS ASP GLY SEQRES 3 A 240 ASP LEU ILE VAL SER MET ARG ILE LEU GLY LYS LYS ARG SEQRES 4 A 240 THR LYS THR TRP HIS LYS GLY THR LEU ILE ALA ILE GLN SEQRES 5 A 240 THR VAL GLY PRO GLY LYS LYS TYR LYS VAL LYS PHE ASP SEQRES 6 A 240 ASN LYS GLY LYS SER LEU LEU SER GLY ASN HIS ILE ALA SEQRES 7 A 240 TYR ASP TYR HIS PRO PRO ALA ASP LYS LEU TYR VAL GLY SEQRES 8 A 240 SER ARG VAL VAL ALA LYS TYR LYS ASP GLY ASN GLN VAL SEQRES 9 A 240 TRP LEU TYR ALA GLY ILE VAL ALA GLU THR PRO ASN VAL SEQRES 10 A 240 LYS ASN LYS LEU ARG PHE LEU ILE PHE PHE ASP ASP GLY SEQRES 11 A 240 TYR ALA SER TYR VAL THR GLN SER GLU LEU TYR PRO ILE SEQRES 12 A 240 CYS ARG PRO LEU LYS LYS THR TRP GLU ASP ILE GLU ASP SEQRES 13 A 240 ILE SER CYS ARG ASP PHE ILE GLU GLU TYR VAL THR ALA SEQRES 14 A 240 TYR PRO ASN ARG PRO MET VAL LEU LEU LYS SER GLY GLN SEQRES 15 A 240 LEU ILE LYS THR GLU TRP GLU GLY THR TRP TRP LYS SER SEQRES 16 A 240 ARG VAL GLU GLU VAL ASP GLY SER LEU VAL ARG ILE LEU SEQRES 17 A 240 PHE LEU ASP ASP LYS ARG CYS GLU TRP ILE TYR ARG GLY SEQRES 18 A 240 SER THR ARG LEU GLU PRO MET PHE SER MET LYS THR SER SEQRES 19 A 240 SER ALA SER ALA LEU GLU HET FNC D 501 48 HET FNC A 501 48 HETNAM FNC 3-METHYL-2-[[(3R,5R)-1-METHYL-5-PHENYL-PIPERIDIN-3- HETNAM 2 FNC YL]AMINO]-5H-PYRROLO[3,2-D]PYRIMIDIN-4-ONE FORMUL 3 FNC 2(C19 H23 N5 O) FORMUL 5 HOH *82(H2 O) HELIX 1 AA1 PRO D 254 LEU D 258 5 5 HELIX 2 AA2 THR D 306 SER D 308 5 3 HELIX 3 AA3 LYS D 319 ILE D 324 5 6 HELIX 4 AA4 ASP D 326 ALA D 339 1 14 HELIX 5 AA5 LEU D 395 MET D 401 1 7 HELIX 6 AA6 SER A 243 ASN A 245 5 3 HELIX 7 AA7 THR A 306 SER A 308 5 3 HELIX 8 AA8 LYS A 319 ILE A 324 5 6 HELIX 9 AA9 ASP A 326 TYR A 340 1 15 HELIX 10 AB1 LEU A 395 LYS A 402 1 8 SHEET 1 AA1 2 LYS D 194 ASP D 195 0 SHEET 2 AA1 2 LEU D 198 ILE D 199 -1 O LEU D 198 N ASP D 195 SHEET 1 AA2 5 LYS D 239 SER D 243 0 SHEET 2 AA2 5 GLY D 227 PHE D 234 -1 N VAL D 232 O SER D 240 SHEET 3 AA2 5 TRP D 213 VAL D 224 -1 N GLN D 222 O LYS D 229 SHEET 4 AA2 5 ARG D 203 LYS D 207 -1 N ILE D 204 O GLY D 216 SHEET 5 AA2 5 ILE D 247 TYR D 249 -1 O ALA D 248 N LEU D 205 SHEET 1 AA3 5 ALA D 302 VAL D 305 0 SHEET 2 AA3 5 PHE D 293 PHE D 297 -1 N PHE D 293 O VAL D 305 SHEET 3 AA3 5 GLN D 273 GLU D 283 -1 N ALA D 282 O LEU D 294 SHEET 4 AA3 5 ARG D 263 ASP D 270 -1 N TYR D 268 O TRP D 275 SHEET 5 AA3 5 LEU D 310 PRO D 312 -1 O TYR D 311 N VAL D 265 SHEET 1 AA4 4 LEU D 353 TRP D 358 0 SHEET 2 AA4 4 THR D 361 ASP D 371 -1 O TRP D 363 N THR D 356 SHEET 3 AA4 4 LEU D 374 PHE D 379 -1 O ARG D 376 N GLU D 369 SHEET 4 AA4 4 CYS D 385 TYR D 389 -1 O GLU D 386 N ILE D 377 SHEET 1 AA5 2 LYS A 194 ASP A 195 0 SHEET 2 AA5 2 LEU A 198 ILE A 199 -1 O LEU A 198 N ASP A 195 SHEET 1 AA6 5 LYS A 239 LEU A 242 0 SHEET 2 AA6 5 GLY A 227 PHE A 234 -1 N TYR A 230 O LEU A 242 SHEET 3 AA6 5 TRP A 213 VAL A 224 -1 N GLN A 222 O LYS A 229 SHEET 4 AA6 5 ARG A 203 LYS A 207 -1 N GLY A 206 O HIS A 214 SHEET 5 AA6 5 ILE A 247 TYR A 249 -1 O ALA A 248 N LEU A 205 SHEET 1 AA7 5 ALA A 302 VAL A 305 0 SHEET 2 AA7 5 PHE A 293 PHE A 297 -1 N PHE A 293 O VAL A 305 SHEET 3 AA7 5 GLN A 273 GLU A 283 -1 N ALA A 282 O LEU A 294 SHEET 4 AA7 5 ARG A 263 ASP A 270 -1 N TYR A 268 O TRP A 275 SHEET 5 AA7 5 LEU A 310 PRO A 312 -1 O TYR A 311 N VAL A 265 SHEET 1 AA8 4 LEU A 353 TRP A 358 0 SHEET 2 AA8 4 THR A 361 ASP A 371 -1 O TRP A 363 N THR A 356 SHEET 3 AA8 4 LEU A 374 PHE A 379 -1 O LEU A 378 N ARG A 366 SHEET 4 AA8 4 CYS A 385 TYR A 389 -1 O GLU A 386 N ILE A 377 SITE 1 AC1 9 TRP A 275 FNC A 501 THR D 212 TYR D 268 SITE 2 AC1 9 TRP D 275 TYR D 277 ASP D 299 TYR D 301 SITE 3 AC1 9 GLU D 386 SITE 1 AC2 7 THR A 212 TYR A 268 ASP A 299 TYR A 301 SITE 2 AC2 7 GLU A 386 TRP D 275 FNC D 501 CRYST1 56.678 86.567 101.196 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009882 0.00000