HEADER HYDROLASE 12-JUN-20 7CBJ TITLE CRYSTAL STRUCTURE OF PDE4D CATALYTIC DOMAIN IN COMPLEX WITH COMPOUND TITLE 2 36 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PDE4D, DPDE3, PDE43; COMPND 5 EC: 3.1.4.53; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE4D, DPDE3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PDE4D, INHIBITOR, COMPLEX STRUCTURE, METAL BINDING PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.L.ZHANG,Y.C.XU REVDAT 2 29-NOV-23 7CBJ 1 REMARK REVDAT 1 16-JUN-21 7CBJ 0 JRNL AUTH R.ZHANG,H.LI,X.ZHANG,J.LI,H.SU,Q.LU,G.DONG,H.DOU,C.FAN,Z.GU, JRNL AUTH 2 Q.MU,W.TANG,Y.XU,H.LIU JRNL TITL DESIGN, SYNTHESIS, AND BIOLOGICAL EVALUATION OF JRNL TITL 2 TETRAHYDROISOQUINOLINES DERIVATIVES AS NOVEL, SELECTIVE PDE4 JRNL TITL 3 INHIBITORS FOR ANTIPSORIASIS TREATMENT. JRNL REF EUR.J.MED.CHEM. V. 211 13004 2021 JRNL REFN ISSN 0223-5234 JRNL PMID 33218684 JRNL DOI 10.1016/J.EJMECH.2020.113004 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 112217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 5540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5200 - 4.6600 1.00 4187 230 0.1789 0.1785 REMARK 3 2 4.6600 - 3.7000 1.00 4034 192 0.1572 0.2191 REMARK 3 3 3.7000 - 3.2400 1.00 3961 200 0.1751 0.1751 REMARK 3 4 3.2300 - 2.9400 1.00 3997 192 0.1853 0.2144 REMARK 3 5 2.9400 - 2.7300 1.00 3933 201 0.1807 0.2201 REMARK 3 6 2.7300 - 2.5700 1.00 3940 198 0.1777 0.1830 REMARK 3 7 2.5700 - 2.4400 1.00 3869 213 0.1767 0.2133 REMARK 3 8 2.4400 - 2.3300 0.99 3893 221 0.1744 0.1860 REMARK 3 9 2.3300 - 2.2400 0.99 3851 222 0.1747 0.2156 REMARK 3 10 2.2400 - 2.1700 0.99 3822 224 0.1693 0.1928 REMARK 3 11 2.1700 - 2.1000 0.99 3885 193 0.1705 0.2001 REMARK 3 12 2.1000 - 2.0400 0.99 3844 226 0.1766 0.1825 REMARK 3 13 2.0400 - 1.9800 0.99 3862 167 0.1790 0.1938 REMARK 3 14 1.9800 - 1.9400 0.99 3827 194 0.1992 0.2201 REMARK 3 15 1.9400 - 1.8900 0.99 3865 213 0.2000 0.2356 REMARK 3 16 1.8900 - 1.8500 0.99 3838 192 0.1961 0.2257 REMARK 3 17 1.8500 - 1.8200 0.99 3794 186 0.1927 0.2050 REMARK 3 18 1.8200 - 1.7800 0.98 3860 182 0.1839 0.2123 REMARK 3 19 1.7800 - 1.7500 0.98 3763 206 0.1816 0.1893 REMARK 3 20 1.7500 - 1.7200 0.98 3821 204 0.1856 0.2320 REMARK 3 21 1.7200 - 1.6900 0.98 3793 201 0.1922 0.2118 REMARK 3 22 1.6900 - 1.6700 0.98 3766 199 0.1976 0.2254 REMARK 3 23 1.6700 - 1.6400 0.98 3790 189 0.1970 0.2406 REMARK 3 24 1.6400 - 1.6200 0.97 3779 176 0.1999 0.2198 REMARK 3 25 1.6200 - 1.6000 0.95 3705 185 0.2041 0.2532 REMARK 3 26 1.6000 - 1.5800 0.93 3558 196 0.2201 0.2810 REMARK 3 27 1.5800 - 1.5600 0.78 3015 169 0.2431 0.2572 REMARK 3 28 1.5600 - 1.5400 0.51 1959 95 0.2569 0.2356 REMARK 3 29 1.5400 - 1.5200 0.27 1052 58 0.2517 0.2857 REMARK 3 30 1.5200 - 1.5000 0.11 414 16 0.2548 0.2668 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7161 12.8677 12.7219 REMARK 3 T TENSOR REMARK 3 T11: 0.2342 T22: 0.1805 REMARK 3 T33: 0.1210 T12: 0.0274 REMARK 3 T13: -0.0261 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 4.0955 L22: 3.8042 REMARK 3 L33: 3.3693 L12: 0.3345 REMARK 3 L13: -0.1408 L23: -1.3678 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: 0.5143 S13: 0.3318 REMARK 3 S21: -0.5646 S22: -0.0458 S23: 0.2412 REMARK 3 S31: -0.3801 S32: -0.1611 S33: 0.0085 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1054 11.5251 27.4037 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0812 REMARK 3 T33: 0.1212 T12: 0.0060 REMARK 3 T13: 0.0014 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.9420 L22: 1.1039 REMARK 3 L33: 1.3331 L12: 0.1914 REMARK 3 L13: -0.1879 L23: 0.1598 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: 0.1061 S13: 0.0583 REMARK 3 S21: -0.1562 S22: -0.0455 S23: 0.2155 REMARK 3 S31: -0.2171 S32: -0.2385 S33: -0.0215 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8042 6.0958 39.0917 REMARK 3 T TENSOR REMARK 3 T11: 0.0462 T22: 0.1462 REMARK 3 T33: 0.1025 T12: -0.0173 REMARK 3 T13: 0.0046 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.5612 L22: 0.5805 REMARK 3 L33: 1.5513 L12: -0.5182 REMARK 3 L13: -0.5856 L23: -0.2381 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: -0.0890 S13: -0.0219 REMARK 3 S21: 0.0788 S22: 0.0609 S23: -0.1862 REMARK 3 S31: -0.0119 S32: 0.4876 S33: 0.0093 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9216 16.8433 38.2913 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.0727 REMARK 3 T33: 0.1007 T12: 0.0053 REMARK 3 T13: 0.0308 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.3012 L22: 1.4028 REMARK 3 L33: 0.9702 L12: -1.2162 REMARK 3 L13: 0.0082 L23: 0.0590 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.0730 S13: 0.2397 REMARK 3 S21: 0.1079 S22: -0.0286 S23: 0.0318 REMARK 3 S31: -0.2846 S32: -0.0432 S33: 0.0047 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7916 7.7345 41.6823 REMARK 3 T TENSOR REMARK 3 T11: 0.0206 T22: 0.1055 REMARK 3 T33: 0.0927 T12: -0.0191 REMARK 3 T13: 0.0326 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 5.2001 L22: 3.5440 REMARK 3 L33: 1.7770 L12: -2.1152 REMARK 3 L13: -0.9039 L23: 0.7070 REMARK 3 S TENSOR REMARK 3 S11: -0.1207 S12: -0.1637 S13: -0.0331 REMARK 3 S21: 0.1915 S22: 0.0316 S23: 0.1412 REMARK 3 S31: -0.0004 S32: -0.2176 S33: 0.0350 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 272 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2481 -6.9638 33.4996 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.1207 REMARK 3 T33: 0.2200 T12: -0.0627 REMARK 3 T13: 0.0594 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.5694 L22: 0.5466 REMARK 3 L33: 0.9332 L12: 0.1493 REMARK 3 L13: -0.2098 L23: -0.2605 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: -0.0709 S13: -0.1790 REMARK 3 S21: 0.0983 S22: 0.0064 S23: 0.2998 REMARK 3 S31: 0.3100 S32: -0.2330 S33: 0.0214 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 326 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8203 1.6466 20.5910 REMARK 3 T TENSOR REMARK 3 T11: 0.0927 T22: 0.1966 REMARK 3 T33: 0.1221 T12: -0.0151 REMARK 3 T13: 0.0573 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 3.8656 L22: 1.3456 REMARK 3 L33: 1.4929 L12: -0.3345 REMARK 3 L13: 1.6537 L23: -0.1808 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: -0.1313 S13: 0.0495 REMARK 3 S21: -0.1253 S22: 0.0288 S23: -0.2565 REMARK 3 S31: -0.0687 S32: 0.4664 S33: -0.0026 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0150 -6.9757 24.0757 REMARK 3 T TENSOR REMARK 3 T11: 0.1714 T22: 0.3197 REMARK 3 T33: 0.3196 T12: 0.0652 REMARK 3 T13: 0.0370 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 3.2006 L22: 1.4955 REMARK 3 L33: 2.1819 L12: 1.6175 REMARK 3 L13: 1.4582 L23: 1.0768 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: -0.1761 S13: -0.1836 REMARK 3 S21: 0.0462 S22: 0.1736 S23: -0.4851 REMARK 3 S31: 0.1636 S32: 0.6992 S33: -0.1527 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3090 -11.5488 19.0689 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.0737 REMARK 3 T33: 0.1894 T12: -0.0513 REMARK 3 T13: 0.0334 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.8226 L22: 1.2753 REMARK 3 L33: 2.6524 L12: 0.6081 REMARK 3 L13: -0.6176 L23: -0.9710 REMARK 3 S TENSOR REMARK 3 S11: -0.1221 S12: 0.1227 S13: -0.2455 REMARK 3 S21: -0.0732 S22: -0.1221 S23: 0.2214 REMARK 3 S31: 0.5005 S32: -0.1989 S33: 0.1755 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1601 7.5205 79.5864 REMARK 3 T TENSOR REMARK 3 T11: 0.3404 T22: 0.6233 REMARK 3 T33: 0.2162 T12: 0.1711 REMARK 3 T13: -0.1480 T23: -0.1481 REMARK 3 L TENSOR REMARK 3 L11: 0.0006 L22: 2.6159 REMARK 3 L33: 1.4259 L12: 0.0649 REMARK 3 L13: -0.0344 L23: -1.1243 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.1533 S13: 0.0098 REMARK 3 S21: 0.4066 S22: -0.0471 S23: -0.3765 REMARK 3 S31: -0.0919 S32: 0.5921 S33: 0.0914 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9525 2.8378 66.2839 REMARK 3 T TENSOR REMARK 3 T11: 0.1189 T22: 0.3063 REMARK 3 T33: 0.1720 T12: 0.3477 REMARK 3 T13: 0.0339 T23: -0.1254 REMARK 3 L TENSOR REMARK 3 L11: 0.2568 L22: 0.8772 REMARK 3 L33: 0.3196 L12: 0.1364 REMARK 3 L13: -0.2230 L23: 0.1841 REMARK 3 S TENSOR REMARK 3 S11: -0.1533 S12: -0.2931 S13: -0.0753 REMARK 3 S21: 0.1838 S22: 0.2156 S23: -0.4360 REMARK 3 S31: 0.4545 S32: 0.7799 S33: -0.0346 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 200 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5070 12.9379 54.2543 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.1645 REMARK 3 T33: 0.1021 T12: 0.0563 REMARK 3 T13: 0.0108 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.5082 L22: 0.4150 REMARK 3 L33: 1.7368 L12: -0.2661 REMARK 3 L13: -0.3275 L23: 0.8384 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: 0.1121 S13: 0.1512 REMARK 3 S21: -0.0168 S22: 0.0944 S23: 0.0787 REMARK 3 S31: -0.3219 S32: -0.4968 S33: -0.0174 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 228 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1173 8.1472 54.1787 REMARK 3 T TENSOR REMARK 3 T11: 0.1082 T22: 0.2649 REMARK 3 T33: 0.2186 T12: 0.0128 REMARK 3 T13: 0.0223 T23: -0.0948 REMARK 3 L TENSOR REMARK 3 L11: 3.9810 L22: 0.8433 REMARK 3 L33: 0.7507 L12: -0.6810 REMARK 3 L13: -0.5870 L23: -0.5893 REMARK 3 S TENSOR REMARK 3 S11: 0.0890 S12: 0.0866 S13: 0.2260 REMARK 3 S21: -0.0915 S22: 0.0749 S23: -0.4417 REMARK 3 S31: -0.0195 S32: 0.4378 S33: -0.1072 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 254 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5984 -2.3052 52.8432 REMARK 3 T TENSOR REMARK 3 T11: 0.1849 T22: 0.1706 REMARK 3 T33: 0.1187 T12: 0.0709 REMARK 3 T13: 0.0205 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 7.6308 L22: 4.5954 REMARK 3 L33: 2.2247 L12: -2.7147 REMARK 3 L13: -1.7244 L23: 1.3596 REMARK 3 S TENSOR REMARK 3 S11: -0.2290 S12: 0.3206 S13: -0.4097 REMARK 3 S21: -0.1334 S22: 0.0193 S23: -0.2132 REMARK 3 S31: 0.4232 S32: 0.3238 S33: 0.1932 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 272 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8737 -14.6560 62.8344 REMARK 3 T TENSOR REMARK 3 T11: 0.5887 T22: 0.2240 REMARK 3 T33: 0.2669 T12: 0.0829 REMARK 3 T13: 0.1571 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.7760 L22: 4.5937 REMARK 3 L33: 0.0112 L12: -2.2586 REMARK 3 L13: -0.1179 L23: -0.0444 REMARK 3 S TENSOR REMARK 3 S11: -0.3613 S12: -0.1324 S13: -0.5672 REMARK 3 S21: 0.3139 S22: 0.1833 S23: 0.2880 REMARK 3 S31: 0.5608 S32: 0.1293 S33: 0.1094 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 303 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1904 -5.5227 65.5255 REMARK 3 T TENSOR REMARK 3 T11: 0.4317 T22: 0.0715 REMARK 3 T33: 0.0730 T12: 0.2329 REMARK 3 T13: 0.1423 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 0.6999 L22: 0.6369 REMARK 3 L33: 1.2138 L12: -0.1103 REMARK 3 L13: -0.3364 L23: 0.5616 REMARK 3 S TENSOR REMARK 3 S11: -0.1484 S12: -0.0137 S13: -0.1618 REMARK 3 S21: -0.0662 S22: 0.0374 S23: -0.0639 REMARK 3 S31: 0.1916 S32: 0.0394 S33: 0.0377 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 326 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7765 14.7821 72.1331 REMARK 3 T TENSOR REMARK 3 T11: 0.3194 T22: 0.2108 REMARK 3 T33: 0.1555 T12: 0.2770 REMARK 3 T13: 0.0959 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 1.4640 L22: 1.1121 REMARK 3 L33: 0.9052 L12: -0.6609 REMARK 3 L13: -0.1953 L23: 0.1394 REMARK 3 S TENSOR REMARK 3 S11: 0.1772 S12: 0.1581 S13: 0.2945 REMARK 3 S21: -0.1018 S22: -0.0303 S23: 0.0260 REMARK 3 S31: -0.3000 S32: -0.1956 S33: 0.0155 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 351 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5503 9.6965 72.0038 REMARK 3 T TENSOR REMARK 3 T11: 0.3525 T22: 0.3595 REMARK 3 T33: 0.2653 T12: 0.1638 REMARK 3 T13: 0.0421 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.8386 L22: 4.7860 REMARK 3 L33: 1.7599 L12: -0.6060 REMARK 3 L13: 0.5394 L23: -2.7233 REMARK 3 S TENSOR REMARK 3 S11: 0.1325 S12: 0.4243 S13: 0.3170 REMARK 3 S21: -0.1892 S22: -0.0222 S23: 0.4264 REMARK 3 S31: -0.1579 S32: -0.6458 S33: -0.1081 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 376 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5611 -6.4300 78.4501 REMARK 3 T TENSOR REMARK 3 T11: 0.5826 T22: 0.0795 REMARK 3 T33: 0.0427 T12: 0.2327 REMARK 3 T13: 0.2070 T23: -0.0755 REMARK 3 L TENSOR REMARK 3 L11: 0.0663 L22: 0.6118 REMARK 3 L33: 0.7633 L12: -0.0585 REMARK 3 L13: -0.1629 L23: 0.4914 REMARK 3 S TENSOR REMARK 3 S11: -0.1910 S12: -0.0282 S13: -0.2064 REMARK 3 S21: -0.1673 S22: -0.0642 S23: -0.1024 REMARK 3 S31: 0.5412 S32: 0.1791 S33: 0.0032 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 1.60600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 6INK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 0.2 M MGCL2, 10% REMARK 280 ISOPROPANOL, 30% EG, 18% PEG 3350, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.06200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.04800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.23150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.04800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.06200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.23150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 65 REMARK 465 GLY A 66 REMARK 465 SER A 67 REMARK 465 SER A 68 REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 HIS A 73 REMARK 465 HIS A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 GLY A 77 REMARK 465 LEU A 78 REMARK 465 VAL A 79 REMARK 465 PRO A 80 REMARK 465 ARG A 81 REMARK 465 GLY A 82 REMARK 465 SER A 83 REMARK 465 HIS A 84 REMARK 465 MET A 85 REMARK 465 GLN A 412 REMARK 465 SER A 413 REMARK 465 MET B 65 REMARK 465 GLY B 66 REMARK 465 SER B 67 REMARK 465 SER B 68 REMARK 465 HIS B 69 REMARK 465 HIS B 70 REMARK 465 HIS B 71 REMARK 465 HIS B 72 REMARK 465 HIS B 73 REMARK 465 HIS B 74 REMARK 465 SER B 75 REMARK 465 SER B 76 REMARK 465 GLY B 77 REMARK 465 LEU B 78 REMARK 465 VAL B 79 REMARK 465 PRO B 80 REMARK 465 ARG B 81 REMARK 465 GLY B 82 REMARK 465 SER B 83 REMARK 465 HIS B 84 REMARK 465 MET B 85 REMARK 465 THR B 86 REMARK 465 GLU B 87 REMARK 465 GLN B 88 REMARK 465 GLN B 412 REMARK 465 SER B 413 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 LYS A 133 CE NZ REMARK 470 LYS A 254 CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 ARG A 342 NE CZ NH1 NH2 REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 GLN B 327 CG CD OE1 NE2 REMARK 470 ARG B 342 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 244 NZ LYS B 255 3655 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 244 CB GLU A 244 CG 0.334 REMARK 500 GLU A 244 CD GLU A 244 OE1 0.164 REMARK 500 GLU A 244 CD GLU A 244 OE2 0.166 REMARK 500 LYS B 255 CD LYS B 255 CE 0.384 REMARK 500 LYS B 255 CE LYS B 255 NZ 0.863 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 244 OE1 - CD - OE2 ANGL. DEV. = -19.2 DEGREES REMARK 500 ASP A 247 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 LYS B 255 CD - CE - NZ ANGL. DEV. = 40.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 227 55.72 39.66 REMARK 500 ASN A 362 49.15 -144.03 REMARK 500 ILE A 376 -62.69 -123.70 REMARK 500 ASP B 90 -55.31 50.21 REMARK 500 ASN B 161 -169.65 -127.22 REMARK 500 ASN B 362 55.94 -150.47 REMARK 500 ILE B 376 -57.14 -122.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 164 NE2 REMARK 620 2 HIS A 200 NE2 95.4 REMARK 620 3 ASP A 201 OD2 86.5 86.9 REMARK 620 4 ASP A 318 OD1 91.4 89.3 175.4 REMARK 620 5 HOH A 617 O 168.2 96.1 91.3 91.6 REMARK 620 6 HOH A 682 O 89.9 173.9 96.5 87.6 78.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 201 OD1 REMARK 620 2 HOH A 617 O 95.4 REMARK 620 3 HOH A 658 O 85.3 97.7 REMARK 620 4 HOH A 667 O 168.9 93.2 86.6 REMARK 620 5 HOH A 674 O 88.1 171.4 90.4 84.3 REMARK 620 6 HOH A 750 O 97.3 83.5 177.0 90.6 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 164 NE2 REMARK 620 2 HIS B 200 NE2 100.1 REMARK 620 3 ASP B 201 OD2 90.2 86.3 REMARK 620 4 ASP B 318 OD1 89.4 89.7 175.8 REMARK 620 5 HOH B 612 O 166.9 92.8 88.2 93.1 REMARK 620 6 HOH B 660 O 87.5 170.9 98.8 85.4 79.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 201 OD1 REMARK 620 2 HOH B 612 O 93.6 REMARK 620 3 HOH B 632 O 84.3 95.0 REMARK 620 4 HOH B 643 O 167.6 94.8 85.9 REMARK 620 5 HOH B 663 O 87.8 173.1 91.9 85.0 REMARK 620 6 HOH B 704 O 98.6 85.6 177.0 91.2 87.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FTX A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FTX B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 506 DBREF 7CBJ A 86 413 UNP Q08499 PDE4D_HUMAN 388 715 DBREF 7CBJ B 86 413 UNP Q08499 PDE4D_HUMAN 388 715 SEQADV 7CBJ MET A 65 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ GLY A 66 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ SER A 67 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ SER A 68 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS A 69 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS A 70 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS A 71 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS A 72 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS A 73 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS A 74 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ SER A 75 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ SER A 76 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ GLY A 77 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ LEU A 78 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ VAL A 79 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ PRO A 80 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ ARG A 81 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ GLY A 82 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ SER A 83 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS A 84 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ MET A 85 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ MET B 65 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ GLY B 66 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ SER B 67 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ SER B 68 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS B 69 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS B 70 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS B 71 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS B 72 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS B 73 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS B 74 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ SER B 75 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ SER B 76 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ GLY B 77 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ LEU B 78 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ VAL B 79 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ PRO B 80 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ ARG B 81 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ GLY B 82 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ SER B 83 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ HIS B 84 UNP Q08499 EXPRESSION TAG SEQADV 7CBJ MET B 85 UNP Q08499 EXPRESSION TAG SEQRES 1 A 349 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 349 LEU VAL PRO ARG GLY SER HIS MET THR GLU GLN GLU ASP SEQRES 3 A 349 VAL LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY SEQRES 4 A 349 LEU HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG SEQRES 5 A 349 PRO LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG SEQRES 6 A 349 ASP LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU SEQRES 7 A 349 ILE THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA SEQRES 8 A 349 ASP VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL SEQRES 9 A 349 VAL GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU SEQRES 10 A 349 GLU ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE SEQRES 11 A 349 PHE ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SEQRES 12 A 349 SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA SEQRES 13 A 349 LEU MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS SEQRES 14 A 349 LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS SEQRES 15 A 349 ASP ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER SEQRES 16 A 349 LEU ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP SEQRES 17 A 349 MET SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR SEQRES 18 A 349 MET VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU SEQRES 19 A 349 LEU LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN SEQRES 20 A 349 ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS SEQRES 21 A 349 PRO LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET SEQRES 22 A 349 GLU GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG SEQRES 23 A 349 GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SEQRES 24 A 349 SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE SEQRES 25 A 349 VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS SEQRES 26 A 349 PRO ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN SEQRES 27 A 349 ARG GLU TRP TYR GLN SER THR ILE PRO GLN SER SEQRES 1 B 349 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 349 LEU VAL PRO ARG GLY SER HIS MET THR GLU GLN GLU ASP SEQRES 3 B 349 VAL LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY SEQRES 4 B 349 LEU HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG SEQRES 5 B 349 PRO LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG SEQRES 6 B 349 ASP LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU SEQRES 7 B 349 ILE THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA SEQRES 8 B 349 ASP VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL SEQRES 9 B 349 VAL GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU SEQRES 10 B 349 GLU ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE SEQRES 11 B 349 PHE ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SEQRES 12 B 349 SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA SEQRES 13 B 349 LEU MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS SEQRES 14 B 349 LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS SEQRES 15 B 349 ASP ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER SEQRES 16 B 349 LEU ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP SEQRES 17 B 349 MET SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR SEQRES 18 B 349 MET VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU SEQRES 19 B 349 LEU LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN SEQRES 20 B 349 ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS SEQRES 21 B 349 PRO LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET SEQRES 22 B 349 GLU GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG SEQRES 23 B 349 GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SEQRES 24 B 349 SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE SEQRES 25 B 349 VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS SEQRES 26 B 349 PRO ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN SEQRES 27 B 349 ARG GLU TRP TYR GLN SER THR ILE PRO GLN SER HET ZN A 501 1 HET MG A 502 1 HET FTX A 503 27 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET ZN B 501 1 HET MG B 502 1 HET FTX B 503 27 HET EDO B 504 4 HET EDO B 505 4 HET EDO B 506 4 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM FTX (1S)-1-[(7-CHLORANYL-1H-INDOL-3-YL)METHYL]-6,7- HETNAM 2 FTX DIMETHOXY-3,4-DIHYDRO-1H-ISOQUINOLINE-2-CARBALDEHYDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 FTX 2(C21 H21 CL N2 O3) FORMUL 6 EDO 12(C2 H6 O2) FORMUL 21 HOH *326(H2 O) HELIX 1 AA1 THR A 86 GLU A 97 1 12 HELIX 2 AA2 HIS A 105 SER A 113 1 9 HELIX 3 AA3 ARG A 116 ARG A 129 1 14 HELIX 4 AA4 ASP A 130 LYS A 136 1 7 HELIX 5 AA5 PRO A 138 HIS A 152 1 15 HELIX 6 AA6 ASN A 161 SER A 177 1 17 HELIX 7 AA7 THR A 178 GLU A 182 5 5 HELIX 8 AA8 THR A 186 HIS A 200 1 15 HELIX 9 AA9 SER A 208 THR A 215 1 8 HELIX 10 AB1 SER A 217 ASN A 224 1 8 HELIX 11 AB2 SER A 227 LEU A 240 1 14 HELIX 12 AB3 LEU A 241 GLU A 243 5 3 HELIX 13 AB4 THR A 253 ALA A 270 1 18 HELIX 14 AB5 THR A 271 SER A 274 5 4 HELIX 15 AB6 LYS A 275 THR A 289 1 15 HELIX 16 AB7 ASN A 302 LEU A 319 1 18 HELIX 17 AB8 SER A 320 LYS A 324 5 5 HELIX 18 AB9 PRO A 325 ARG A 350 1 26 HELIX 19 AC1 SER A 364 ILE A 376 1 13 HELIX 20 AC2 ILE A 376 VAL A 388 1 13 HELIX 21 AC3 ALA A 392 ILE A 410 1 19 HELIX 22 AC4 ASP B 90 GLU B 97 1 8 HELIX 23 AC5 HIS B 105 SER B 113 1 9 HELIX 24 AC6 ARG B 116 ARG B 129 1 14 HELIX 25 AC7 ASP B 130 PHE B 135 1 6 HELIX 26 AC8 PRO B 138 HIS B 152 1 15 HELIX 27 AC9 ASN B 161 LEU B 176 1 16 HELIX 28 AD1 SER B 177 GLU B 182 5 6 HELIX 29 AD2 THR B 186 HIS B 200 1 15 HELIX 30 AD3 SER B 208 THR B 215 1 8 HELIX 31 AD4 SER B 217 ASN B 224 1 8 HELIX 32 AD5 SER B 227 LEU B 240 1 14 HELIX 33 AD6 LEU B 241 GLU B 243 5 3 HELIX 34 AD7 THR B 253 ALA B 270 1 18 HELIX 35 AD8 THR B 271 SER B 274 5 4 HELIX 36 AD9 LYS B 275 THR B 289 1 15 HELIX 37 AE1 ASN B 302 LEU B 319 1 18 HELIX 38 AE2 SER B 320 LYS B 324 5 5 HELIX 39 AE3 PRO B 325 ARG B 350 1 26 HELIX 40 AE4 SER B 364 ILE B 376 1 13 HELIX 41 AE5 ILE B 376 VAL B 388 1 13 HELIX 42 AE6 ALA B 392 THR B 409 1 18 LINK NE2 HIS A 164 ZN ZN A 501 1555 1555 2.19 LINK NE2 HIS A 200 ZN ZN A 501 1555 1555 2.20 LINK OD2 ASP A 201 ZN ZN A 501 1555 1555 2.10 LINK OD1 ASP A 201 MG MG A 502 1555 1555 2.02 LINK OD1 ASP A 318 ZN ZN A 501 1555 1555 2.13 LINK ZN ZN A 501 O HOH A 617 1555 1555 2.16 LINK ZN ZN A 501 O HOH A 682 1555 1555 2.29 LINK MG MG A 502 O HOH A 617 1555 1555 2.07 LINK MG MG A 502 O HOH A 658 1555 1555 2.01 LINK MG MG A 502 O HOH A 667 1555 1555 2.10 LINK MG MG A 502 O HOH A 674 1555 1555 2.12 LINK MG MG A 502 O HOH A 750 1555 1555 2.10 LINK NE2 HIS B 164 ZN ZN B 501 1555 1555 2.14 LINK NE2 HIS B 200 ZN ZN B 501 1555 1555 2.18 LINK OD2 ASP B 201 ZN ZN B 501 1555 1555 2.07 LINK OD1 ASP B 201 MG MG B 502 1555 1555 2.05 LINK OD1 ASP B 318 ZN ZN B 501 1555 1555 2.15 LINK ZN ZN B 501 O HOH B 612 1555 1555 2.16 LINK ZN ZN B 501 O HOH B 660 1555 1555 2.27 LINK MG MG B 502 O HOH B 612 1555 1555 2.04 LINK MG MG B 502 O HOH B 632 1555 1555 2.09 LINK MG MG B 502 O HOH B 643 1555 1555 2.14 LINK MG MG B 502 O HOH B 663 1555 1555 2.11 LINK MG MG B 502 O HOH B 704 1555 1555 2.02 CISPEP 1 HIS A 389 PRO A 390 0 3.76 CISPEP 2 HIS B 389 PRO B 390 0 0.32 SITE 1 AC1 6 HIS A 164 HIS A 200 ASP A 201 ASP A 318 SITE 2 AC1 6 HOH A 617 HOH A 682 SITE 1 AC2 6 ASP A 201 HOH A 617 HOH A 658 HOH A 667 SITE 2 AC2 6 HOH A 674 HOH A 750 SITE 1 AC3 8 TYR A 159 MET A 273 ILE A 336 MET A 357 SITE 2 AC3 8 GLN A 369 PHE A 372 HOH A 640 HOH A 651 SITE 1 AC4 4 LYS A 262 ILE A 265 ASP A 266 HOH A 624 SITE 1 AC5 5 ASP A 266 LEU A 269 ALA A 270 LYS A 275 SITE 2 AC5 5 GLN A 311 SITE 1 AC6 5 PHE A 238 PHE A 249 ARG A 257 ARG A 261 SITE 2 AC6 5 HOH A 689 SITE 1 AC7 2 ASN A 402 HOH A 632 SITE 1 AC8 3 ARG A 330 GLU A 366 TYR A 406 SITE 1 AC9 4 ASN A 115 ALA A 155 ASN A 162 ILE A 163 SITE 1 AD1 4 THR A 134 LYS A 136 ASN A 251 GLN A 256 SITE 1 AD2 5 THR A 186 LEU A 188 GLU A 189 SER A 259 SITE 2 AD2 5 MET A 263 SITE 1 AD3 5 SER A 208 PHE A 340 GLN A 343 SER A 355 SITE 2 AD3 5 PRO A 356 SITE 1 AD4 6 HIS B 164 HIS B 200 ASP B 201 ASP B 318 SITE 2 AD4 6 HOH B 612 HOH B 660 SITE 1 AD5 6 ASP B 201 HOH B 612 HOH B 632 HOH B 643 SITE 2 AD5 6 HOH B 663 HOH B 704 SITE 1 AD6 10 TYR B 159 MET B 273 ASN B 321 ILE B 336 SITE 2 AD6 10 PHE B 340 MET B 357 GLN B 369 PHE B 372 SITE 3 AD6 10 HOH B 634 HOH B 637 SITE 1 AD7 3 HOH A 647 LYS B 262 ASP B 266 SITE 1 AD8 4 SER B 208 PHE B 340 PRO B 356 HOH B 654 SITE 1 AD9 8 GLN A 407 ASN B 115 GLU B 150 ASP B 151 SITE 2 AD9 8 TYR B 153 ALA B 155 ASN B 162 HOH B 613 CRYST1 58.124 80.463 164.096 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006094 0.00000