HEADER TRANSCRIPTION 15-JUN-20 7CBY TITLE STRUCTURE OF FOXG1 DNA BINDING DOMAIN BOUND TO DBE2 DNA SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*CP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*TP*TP*TP*G)- COMPND 3 3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS.; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*AP*AP*AP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*GP*A)- COMPND 9 3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS.; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: FORKHEAD BOX PROTEIN G1; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: BRAIN FACTOR 1,BF1,BRAIN FACTOR 2,HBF-2,FORKHEAD BOX PROTEIN COMPND 17 G1A,FORKHEAD BOX PROTEIN G1B,FORKHEAD BOX PROTEIN G1C,FORKHEAD- COMPND 18 RELATED PROTEIN FKHL1,HFK1,FORKHEAD-RELATED PROTEIN FKHL2,HFK2, COMPND 19 FORKHEAD-RELATED PROTEIN FKHL3,HFK3; COMPND 20 ENGINEERED: YES; COMPND 21 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS. SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: FOXG1, FKH2, FKHL1, FKHL2, FKHL3, FKHL4, FOXG1A, FOXG1B, SOURCE 14 FOXG1C; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI O103:H2 STR. 12009; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 585395 KEYWDS FOXG1, FORKHEAD BOX, TRANSCRIPTION FACTORS, FOXG1 SYNDROME, DBE2, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.DAI,J.LI,Y.H.CHEN REVDAT 3 29-NOV-23 7CBY 1 REMARK REVDAT 2 09-DEC-20 7CBY 1 JRNL REVDAT 1 28-OCT-20 7CBY 0 JRNL AUTH S.DAI,J.LI,H.ZHANG,X.CHEN,M.GUO,Z.CHEN,Y.CHEN JRNL TITL STRUCTURAL BASIS FOR DNA RECOGNITION BY FOXG1 AND THE JRNL TITL 2 CHARACTERIZATION OF DISEASE-CAUSING FOXG1 MUTATIONS. JRNL REF J.MOL.BIOL. V. 432 6146 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 33058871 JRNL DOI 10.1016/J.JMB.2020.10.007 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 25550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.2243 0.90 2548 150 0.1563 0.1639 REMARK 3 2 4.2243 - 3.3564 1.00 2840 154 0.1289 0.1441 REMARK 3 3 3.3564 - 2.9331 0.99 2842 136 0.1445 0.1680 REMARK 3 4 2.9331 - 2.6654 1.00 2809 175 0.1713 0.2028 REMARK 3 5 2.6654 - 2.4746 1.00 2902 134 0.1593 0.2005 REMARK 3 6 2.4746 - 2.3288 1.00 2855 148 0.1620 0.1930 REMARK 3 7 2.3288 - 2.2123 1.00 2870 137 0.1571 0.1991 REMARK 3 8 2.2123 - 2.1161 1.00 2880 121 0.1577 0.2259 REMARK 3 9 2.1161 - 2.0347 1.00 2820 160 0.1617 0.1904 REMARK 3 10 2.0347 - 1.9645 1.00 2873 136 0.1618 0.2006 REMARK 3 11 1.9645 - 1.9031 1.00 2868 121 0.1544 0.1620 REMARK 3 12 1.9031 - 1.8487 1.00 2870 149 0.1628 0.2089 REMARK 3 13 1.8487 - 1.8001 1.00 2859 147 0.1687 0.2236 REMARK 3 14 1.8001 - 1.7562 1.00 2809 158 0.1694 0.2167 REMARK 3 15 1.7562 - 1.7163 0.99 2818 152 0.1709 0.1875 REMARK 3 16 1.7163 - 1.6797 0.96 2754 134 0.1775 0.1844 REMARK 3 17 1.6797 - 1.6462 0.87 2476 137 0.1676 0.1783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1603 REMARK 3 ANGLE : 1.117 2299 REMARK 3 CHIRALITY : 0.052 240 REMARK 3 PLANARITY : 0.009 185 REMARK 3 DIHEDRAL : 21.725 1056 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9710 -0.5488 4.4643 REMARK 3 T TENSOR REMARK 3 T11: 0.1807 T22: 0.1107 REMARK 3 T33: 0.0487 T12: 0.0185 REMARK 3 T13: -0.0328 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 3.0533 L22: 0.6484 REMARK 3 L33: 4.2081 L12: -0.6975 REMARK 3 L13: -0.2815 L23: -0.4864 REMARK 3 S TENSOR REMARK 3 S11: -0.1739 S12: 0.0502 S13: 0.1699 REMARK 3 S21: 0.0593 S22: 0.0242 S23: 0.1740 REMARK 3 S31: -0.4936 S32: 0.1509 S33: 0.0792 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5188 -9.2768 10.8523 REMARK 3 T TENSOR REMARK 3 T11: 0.0840 T22: 0.2420 REMARK 3 T33: 0.2082 T12: 0.0767 REMARK 3 T13: 0.0330 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.1317 L22: 1.7268 REMARK 3 L33: 2.5351 L12: 0.0865 REMARK 3 L13: -0.4764 L23: 0.3519 REMARK 3 S TENSOR REMARK 3 S11: 0.1697 S12: 0.4434 S13: -1.2569 REMARK 3 S21: -0.0843 S22: 0.1003 S23: -0.5425 REMARK 3 S31: -0.0662 S32: 0.8005 S33: -0.0252 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0377 -5.6270 28.1154 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.2222 REMARK 3 T33: 0.1791 T12: -0.0040 REMARK 3 T13: -0.0211 T23: 0.0650 REMARK 3 L TENSOR REMARK 3 L11: 2.7292 L22: 5.2221 REMARK 3 L33: 6.8120 L12: -0.7153 REMARK 3 L13: -0.1035 L23: -1.9313 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.2969 S13: 0.1478 REMARK 3 S21: 0.6023 S22: -0.1048 S23: -0.1110 REMARK 3 S31: -0.6884 S32: 0.8948 S33: 0.0505 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1759 -15.9223 35.8311 REMARK 3 T TENSOR REMARK 3 T11: 0.2517 T22: 0.2369 REMARK 3 T33: 0.2330 T12: 0.0224 REMARK 3 T13: -0.0549 T23: 0.0889 REMARK 3 L TENSOR REMARK 3 L11: 3.0253 L22: 4.7781 REMARK 3 L33: 3.9199 L12: -2.4305 REMARK 3 L13: -2.3231 L23: 3.0646 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: -0.1286 S13: -0.6275 REMARK 3 S21: 0.2853 S22: -0.0459 S23: 0.7006 REMARK 3 S31: 0.2753 S32: 0.0194 S33: 0.0109 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0860 -13.3524 27.9498 REMARK 3 T TENSOR REMARK 3 T11: 0.1000 T22: 0.3552 REMARK 3 T33: 0.2833 T12: 0.1154 REMARK 3 T13: -0.0526 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 3.0174 L22: 0.8351 REMARK 3 L33: 2.4008 L12: 1.2245 REMARK 3 L13: 0.7900 L23: 1.0014 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.5792 S13: -1.5476 REMARK 3 S21: 0.1271 S22: 0.4932 S23: 0.0762 REMARK 3 S31: -0.0059 S32: 1.4551 S33: -0.1708 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1559 -2.9029 18.3381 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.1331 REMARK 3 T33: 0.1348 T12: 0.0056 REMARK 3 T13: 0.0081 T23: 0.0596 REMARK 3 L TENSOR REMARK 3 L11: 1.9349 L22: 0.8633 REMARK 3 L33: 4.1753 L12: -0.4287 REMARK 3 L13: 0.7328 L23: 1.1176 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: 0.0562 S13: 0.1366 REMARK 3 S21: -0.0545 S22: -0.1440 S23: -0.0864 REMARK 3 S31: -0.4070 S32: 0.4297 S33: 0.0290 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5960 -5.1067 0.1936 REMARK 3 T TENSOR REMARK 3 T11: 0.1688 T22: 0.1958 REMARK 3 T33: 0.0828 T12: 0.0210 REMARK 3 T13: 0.0238 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 5.7766 L22: 2.6514 REMARK 3 L33: 2.6648 L12: 0.9571 REMARK 3 L13: 2.4604 L23: 0.6513 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: 0.4582 S13: -0.4709 REMARK 3 S21: -0.2877 S22: 0.0909 S23: -0.1979 REMARK 3 S31: 0.0331 S32: 0.5115 S33: -0.0483 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 177 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4657 4.5808 31.2394 REMARK 3 T TENSOR REMARK 3 T11: 0.2224 T22: 0.0901 REMARK 3 T33: 0.1616 T12: -0.0323 REMARK 3 T13: -0.0185 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.7046 L22: 2.9184 REMARK 3 L33: 0.9086 L12: -0.8360 REMARK 3 L13: -0.6740 L23: 0.0229 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: -0.2287 S13: 0.3200 REMARK 3 S21: 0.7668 S22: 0.0029 S23: -0.6973 REMARK 3 S31: -0.3520 S32: 0.3420 S33: -0.0314 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 186 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2663 -8.4452 25.5200 REMARK 3 T TENSOR REMARK 3 T11: 0.0706 T22: 0.0715 REMARK 3 T33: 0.0833 T12: -0.0067 REMARK 3 T13: 0.0272 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 3.9893 L22: 1.9952 REMARK 3 L33: 2.4189 L12: 0.5540 REMARK 3 L13: 0.9366 L23: 0.8105 REMARK 3 S TENSOR REMARK 3 S11: -0.0770 S12: -0.2813 S13: -0.1884 REMARK 3 S21: 0.0509 S22: -0.0675 S23: 0.1670 REMARK 3 S31: 0.2047 S32: -0.1905 S33: -0.0444 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 197 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8153 -4.0845 20.4665 REMARK 3 T TENSOR REMARK 3 T11: 0.0555 T22: 0.1360 REMARK 3 T33: 0.1016 T12: 0.0142 REMARK 3 T13: 0.0155 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.3168 L22: 2.5728 REMARK 3 L33: 3.5508 L12: 0.0031 REMARK 3 L13: -0.3221 L23: 0.5886 REMARK 3 S TENSOR REMARK 3 S11: 0.0676 S12: 0.1044 S13: 0.0454 REMARK 3 S21: -0.0441 S22: -0.2585 S23: 0.4675 REMARK 3 S31: -0.0710 S32: -0.6695 S33: -0.0349 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 215 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3901 5.9324 25.0969 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: -0.2172 REMARK 3 T33: 0.1321 T12: 0.0548 REMARK 3 T13: 0.0603 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 2.5444 L22: 3.6118 REMARK 3 L33: 3.3032 L12: -1.2835 REMARK 3 L13: 0.8274 L23: -0.3312 REMARK 3 S TENSOR REMARK 3 S11: 0.1735 S12: 0.8578 S13: 0.6686 REMARK 3 S21: 0.0871 S22: -0.4995 S23: -0.1560 REMARK 3 S31: -0.8575 S32: 1.1468 S33: -0.0467 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 222 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9716 -7.0804 16.4004 REMARK 3 T TENSOR REMARK 3 T11: 0.0642 T22: 0.0518 REMARK 3 T33: 0.0415 T12: 0.0297 REMARK 3 T13: -0.0033 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 3.5865 L22: 2.2949 REMARK 3 L33: 3.0978 L12: 0.2170 REMARK 3 L13: 0.1041 L23: 0.9276 REMARK 3 S TENSOR REMARK 3 S11: 0.1796 S12: 0.1040 S13: -0.2586 REMARK 3 S21: -0.0708 S22: -0.1824 S23: -0.2225 REMARK 3 S31: 0.0914 S32: -0.0406 S33: 0.0293 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 243 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3044 -11.4822 7.1907 REMARK 3 T TENSOR REMARK 3 T11: 0.3041 T22: 0.6518 REMARK 3 T33: 0.4092 T12: 0.0072 REMARK 3 T13: -0.1393 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 8.0342 L22: 2.2578 REMARK 3 L33: 3.7150 L12: -1.0772 REMARK 3 L13: 2.3645 L23: 0.3158 REMARK 3 S TENSOR REMARK 3 S11: 0.1885 S12: 0.8185 S13: -0.1489 REMARK 3 S21: -0.8180 S22: -0.2081 S23: 1.4132 REMARK 3 S31: 0.1805 S32: -1.0672 S33: -0.0048 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 254 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4335 -17.0206 23.6241 REMARK 3 T TENSOR REMARK 3 T11: 0.1972 T22: 0.0234 REMARK 3 T33: 0.2333 T12: -0.0851 REMARK 3 T13: 0.0793 T23: 0.0874 REMARK 3 L TENSOR REMARK 3 L11: 1.9359 L22: 0.6746 REMARK 3 L33: 6.3007 L12: -0.6172 REMARK 3 L13: 2.1524 L23: -1.3259 REMARK 3 S TENSOR REMARK 3 S11: 0.4803 S12: 0.2900 S13: -1.1204 REMARK 3 S21: -0.0966 S22: -0.1657 S23: 0.8462 REMARK 3 S31: 0.9885 S32: -0.3586 S33: -0.1218 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 267 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3118 -14.2400 33.6932 REMARK 3 T TENSOR REMARK 3 T11: 0.2895 T22: 0.1580 REMARK 3 T33: 0.1838 T12: 0.0502 REMARK 3 T13: 0.0657 T23: 0.1025 REMARK 3 L TENSOR REMARK 3 L11: 4.4786 L22: 3.3056 REMARK 3 L33: 4.7498 L12: 0.3733 REMARK 3 L13: -0.3086 L23: -3.5171 REMARK 3 S TENSOR REMARK 3 S11: -0.1911 S12: -0.5613 S13: -0.4678 REMARK 3 S21: 0.9952 S22: -0.1441 S23: -0.2396 REMARK 3 S31: 0.0884 S32: 0.4049 S33: -0.0324 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26897 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 22.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6AKO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80 MM NACL, 40 MM SODIUM CACODYLATE, REMARK 280 PH 6.0, 45% 2-METHYL-2,4-PENTANEDIOL, 12 MM SPERMINE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.06300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.79700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.72300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.79700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.06300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.72300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 176 REMARK 465 SER C 277 REMARK 465 THR C 278 REMARK 465 THR C 279 REMARK 465 SER C 280 REMARK 465 ARG C 281 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 237 CG CD CE NZ REMARK 470 HIS C 245 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 247 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 430 O HOH C 437 1.84 REMARK 500 O HOH C 411 O HOH C 436 1.86 REMARK 500 O HOH B 177 O HOH C 378 1.86 REMARK 500 O HOH C 401 O HOH C 428 1.92 REMARK 500 O HOH C 394 O HOH C 408 1.94 REMARK 500 O HOH A 255 O HOH A 291 2.00 REMARK 500 O HOH B 177 O HOH B 195 2.00 REMARK 500 O HOH B 185 O HOH C 428 2.04 REMARK 500 NZ LYS C 251 O HOH C 301 2.05 REMARK 500 O HOH B 118 O HOH B 148 2.07 REMARK 500 O HOH B 181 O HOH B 192 2.07 REMARK 500 O HOH C 429 O HOH C 439 2.11 REMARK 500 O HOH A 278 O HOH C 419 2.11 REMARK 500 O HOH A 232 O HOH A 276 2.13 REMARK 500 O HOH C 364 O HOH C 365 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 266 O HOH C 408 4546 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA B 13 O3' DA B 13 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA B 2 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA B 13 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 303 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B 202 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH C 446 DISTANCE = 6.39 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 101 DBREF 7CBY A 1 16 PDB 7CBY 7CBY 1 16 DBREF 7CBY B 1 16 PDB 7CBY 7CBY 1 16 DBREF 7CBY C 178 281 UNP P55316 FOXG1_HUMAN 178 281 SEQADV 7CBY GLY C 176 UNP P55316 EXPRESSION TAG SEQADV 7CBY PRO C 177 UNP P55316 EXPRESSION TAG SEQRES 1 A 16 DT DC DT DT DG DT DT DT DA DC DA DT DT SEQRES 2 A 16 DT DT DG SEQRES 1 B 16 DC DA DA DA DA DT DG DT DA DA DA DC DA SEQRES 2 B 16 DA DG DA SEQRES 1 C 106 GLY PRO LYS TYR GLU LYS PRO PRO PHE SER TYR ASN ALA SEQRES 2 C 106 LEU ILE MET MET ALA ILE ARG GLN SER PRO GLU LYS ARG SEQRES 3 C 106 LEU THR LEU ASN GLY ILE TYR GLU PHE ILE MET LYS ASN SEQRES 4 C 106 PHE PRO TYR TYR ARG GLU ASN LYS GLN GLY TRP GLN ASN SEQRES 5 C 106 SER ILE ARG HIS ASN LEU SER LEU ASN LYS CYS PHE VAL SEQRES 6 C 106 LYS VAL PRO ARG HIS TYR ASP ASP PRO GLY LYS GLY ASN SEQRES 7 C 106 TYR TRP MET LEU ASP PRO SER SER ASP ASP VAL PHE ILE SEQRES 8 C 106 GLY GLY THR THR GLY LYS LEU ARG ARG ARG SER THR THR SEQRES 9 C 106 SER ARG HET PEG A 101 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 4 PEG C4 H10 O3 FORMUL 5 HOH *351(H2 O) HELIX 1 AA1 SER C 185 SER C 197 1 13 HELIX 2 AA2 THR C 203 PHE C 215 1 13 HELIX 3 AA3 PRO C 216 GLU C 220 5 5 HELIX 4 AA4 ASN C 221 ASN C 236 1 16 HELIX 5 AA5 PRO C 259 ASP C 262 5 4 SHEET 1 AA1 2 PHE C 239 VAL C 242 0 SHEET 2 AA1 2 TYR C 254 LEU C 257 -1 O MET C 256 N VAL C 240 SHEET 1 AA2 2 VAL C 264 ILE C 266 0 SHEET 2 AA2 2 LEU C 273 ARG C 275 -1 O ARG C 274 N PHE C 265 SITE 1 AC1 6 DT A 6 HOH A 216 LEU C 233 SER C 234 SITE 2 AC1 6 ASN C 236 PHE C 239 CRYST1 48.126 61.446 73.594 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020779 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016274 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013588 0.00000