HEADER DNA BINDING PROTEIN/DNA 17-JUN-20 7CCJ TITLE SULFUR BINDING DOMAIN OF SPRMCRA COMPLEXED WITH PHOSPHOROTHIOATED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HNHC DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SULFUR BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*GP*AP*TP*CP*AP*TP*C)-3'); COMPND 8 CHAIN: E, C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*GP*GP*AP*TP*CP*AP*TP*C)-3'); COMPND 12 CHAIN: F, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES PRISTINAESPIRALIS; SOURCE 3 ORGANISM_TAXID: 38300; SOURCE 4 GENE: SPRI_5136; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: BERMANELLA MARISRUBRI; SOURCE 10 ORGANISM_TAXID: 207949; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: BERMANELLA MARISRUBRI; SOURCE 14 ORGANISM_TAXID: 207949 KEYWDS SULFUR BINDING DOMAIN, RESTRICTION ENZYME, PHOSPHOROTHIOATED DNA, DNA KEYWDS 2 BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.YU,G.ZHAO,J.GAN,G.LIU,G.WU,X.HE REVDAT 3 29-NOV-23 7CCJ 1 REMARK REVDAT 2 20-JAN-21 7CCJ 1 JRNL REVDAT 1 08-JUL-20 7CCJ 0 JRNL AUTH H.YU,J.LI,G.LIU,G.ZHAO,Y.WANG,W.HU,Z.DENG,G.WU,J.GAN, JRNL AUTH 2 Y.L.ZHAO,X.HE JRNL TITL DNA BACKBONE INTERACTIONS IMPACT THE SEQUENCE SPECIFICITY OF JRNL TITL 2 DNA SULFUR-BINDING DOMAINS: REVELATIONS FROM STRUCTURAL JRNL TITL 3 ANALYSES. JRNL REF NUCLEIC ACIDS RES. V. 48 8755 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32621606 JRNL DOI 10.1093/NAR/GKAA574 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 9166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7260 - 4.7542 0.98 2960 143 0.2413 0.3020 REMARK 3 2 4.7542 - 3.7763 0.99 2902 140 0.2235 0.2776 REMARK 3 3 3.7763 - 3.3000 0.99 2867 154 0.2662 0.2987 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3230 REMARK 3 ANGLE : 0.627 4522 REMARK 3 CHIRALITY : 0.037 500 REMARK 3 PLANARITY : 0.004 482 REMARK 3 DIHEDRAL : 14.823 1776 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 4:162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.436 -8.485 -13.044 REMARK 3 T TENSOR REMARK 3 T11: 0.4809 T22: 0.3052 REMARK 3 T33: 0.3927 T12: -0.0761 REMARK 3 T13: -0.0082 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 2.5107 L22: 1.6788 REMARK 3 L33: 3.5478 L12: -1.6335 REMARK 3 L13: 0.3074 L23: 1.4216 REMARK 3 S TENSOR REMARK 3 S11: 0.1419 S12: -0.0631 S13: 0.0291 REMARK 3 S21: 0.3590 S22: 0.1005 S23: 0.1061 REMARK 3 S31: 0.0398 S32: 0.2501 S33: -0.2279 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 4:164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.649 -34.022 -12.865 REMARK 3 T TENSOR REMARK 3 T11: 0.5676 T22: 0.3369 REMARK 3 T33: 0.5108 T12: -0.0498 REMARK 3 T13: -0.0156 T23: 0.0707 REMARK 3 L TENSOR REMARK 3 L11: 4.6714 L22: 2.7677 REMARK 3 L33: 2.2429 L12: -0.3916 REMARK 3 L13: 0.9039 L23: -0.2000 REMARK 3 S TENSOR REMARK 3 S11: 0.2227 S12: -0.2785 S13: 0.1096 REMARK 3 S21: 0.2505 S22: -0.0748 S23: -0.4482 REMARK 3 S31: -0.2274 S32: 0.2256 S33: -0.1232 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND RESID 1:8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.725 -34.422 -31.849 REMARK 3 T TENSOR REMARK 3 T11: 0.7016 T22: 0.5981 REMARK 3 T33: 0.6733 T12: -0.0247 REMARK 3 T13: -0.0547 T23: -0.1402 REMARK 3 L TENSOR REMARK 3 L11: 5.5978 L22: 5.6386 REMARK 3 L33: 2.6133 L12: -2.1561 REMARK 3 L13: 0.7931 L23: -1.0324 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: -0.2275 S13: 1.4156 REMARK 3 S21: 0.0894 S22: -0.6440 S23: -1.0527 REMARK 3 S31: 0.2418 S32: -0.1262 S33: 0.5346 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.284 -34.110 -27.884 REMARK 3 T TENSOR REMARK 3 T11: 0.6387 T22: 0.4039 REMARK 3 T33: 0.3631 T12: 0.0202 REMARK 3 T13: -0.0713 T23: -0.0731 REMARK 3 L TENSOR REMARK 3 L11: 4.7513 L22: 3.5748 REMARK 3 L33: 3.8239 L12: 1.4481 REMARK 3 L13: 0.0720 L23: 3.5098 REMARK 3 S TENSOR REMARK 3 S11: -0.2111 S12: 0.0599 S13: -0.3095 REMARK 3 S21: -0.9565 S22: -0.0953 S23: -0.0228 REMARK 3 S31: 0.2986 S32: 0.2614 S33: 0.3676 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN E AND RESID 1:8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.050 -8.212 -32.164 REMARK 3 T TENSOR REMARK 3 T11: 0.8815 T22: 0.6509 REMARK 3 T33: 0.6782 T12: -0.1028 REMARK 3 T13: -0.0705 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 2.9705 L22: 4.9365 REMARK 3 L33: 7.8885 L12: 0.0878 REMARK 3 L13: 3.6093 L23: -4.0474 REMARK 3 S TENSOR REMARK 3 S11: 0.3689 S12: -0.6147 S13: -1.2327 REMARK 3 S21: -0.2650 S22: 0.1005 S23: 1.8854 REMARK 3 S31: 0.7975 S32: -0.5780 S33: -0.5294 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN F AND RESID 1:8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.660 -8.554 -28.180 REMARK 3 T TENSOR REMARK 3 T11: 0.5621 T22: 0.5294 REMARK 3 T33: 0.5897 T12: 0.0031 REMARK 3 T13: -0.2849 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 2.9248 L22: 3.6370 REMARK 3 L33: 7.9026 L12: -1.4051 REMARK 3 L13: -1.4730 L23: -3.8238 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: -0.5332 S13: 0.1215 REMARK 3 S21: -1.0488 S22: -0.1864 S23: 0.0643 REMARK 3 S31: 1.6781 S32: 0.0632 S33: 0.1148 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN E REMARK 3 ATOM PAIRS NUMBER : 152 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN D REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 128 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 4 THROUGH 43 OR REMARK 3 (RESID 44 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 45 REMARK 3 THROUGH 57 OR (RESID 58 THROUGH 59 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 60 THROUGH 139 OR REMARK 3 (RESID 140 THROUGH 141 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 142 THROUGH 162)) REMARK 3 SELECTION : (CHAIN B AND (RESID 4 THROUGH 129 OR REMARK 3 (RESID 130 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 131 REMARK 3 THROUGH 162)) REMARK 3 ATOM PAIRS NUMBER : 1436 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9347 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.45000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 1.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5ZMO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL PH 8.5, PEG 8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.20700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.20700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.86450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.63950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.86450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.63950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.20700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.86450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.63950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.20700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.86450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.63950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 163 REMARK 465 GLU A 164 REMARK 465 GLY A 165 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 4 OG1 CG2 REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 THR B 4 OG1 CG2 REMARK 470 ASP B 7 CG OD1 OD2 REMARK 470 ARG B 8 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 44 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 140 CG CD OE1 OE2 REMARK 470 ASP B 163 CG OD1 OD2 REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 75 OD1 ASP A 104 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG F 4 C5' DG F 4 C4' 0.063 REMARK 500 DG F 4 C2' DG F 4 C1' 0.107 REMARK 500 DG F 4 O3' DG F 4 C3' -0.112 REMARK 500 AS D 5 O3' DT D 6 P -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG F 4 O4' - C4' - C3' ANGL. DEV. = 5.7 DEGREES REMARK 500 DG F 4 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DC F 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 48 156.15 -42.83 REMARK 500 PRO A 74 76.72 -69.15 REMARK 500 ALA A 101 31.61 -94.18 REMARK 500 ASP A 104 -57.07 -148.54 REMARK 500 ALA A 148 99.71 -61.96 REMARK 500 ASP A 158 8.84 -65.61 REMARK 500 ASP B 104 -55.09 -138.29 REMARK 500 ALA B 148 99.89 -62.43 REMARK 500 ASP B 158 7.75 -65.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7CC9 RELATED DB: PDB REMARK 900 RELATED ID: 7CCD RELATED DB: PDB DBREF1 7CCJ A 1 165 UNP A0A0M4DML1_STRPR DBREF2 7CCJ A A0A0M4DML1 1 165 DBREF 7CCJ E 1 8 PDB 7CCJ 7CCJ 1 8 DBREF 7CCJ F 1 8 PDB 7CCJ 7CCJ 1 8 DBREF1 7CCJ B 1 165 UNP A0A0M4DML1_STRPR DBREF2 7CCJ B A0A0M4DML1 1 165 DBREF 7CCJ C 1 8 PDB 7CCJ 7CCJ 1 8 DBREF 7CCJ D 1 8 PDB 7CCJ 7CCJ 1 8 SEQRES 1 A 165 MET PRO LEU THR ASP THR ASP ARG SER GLU ASP PHE LEU SEQRES 2 A 165 ARG ARG VAL ARG GLY LEU LYS ALA ALA ARG THR ALA ASN SEQRES 3 A 165 GLY PRO ARG LEU TYR GLN PRO ILE THR LEU LEU TRP ALA SEQRES 4 A 165 VAL GLY ARG ALA ARG ARG GLY GLU ALA ARG THR LEU ALA SEQRES 5 A 165 TRP ALA ASP THR ASP GLU ALA ILE GLY ALA LEU LEU LYS SEQRES 6 A 165 ARG HIS GLY ALA ARG GLY GLU ARG PRO ARG PRO ASP TYR SEQRES 7 A 165 PRO VAL LEU ALA LEU HIS ARG ALA GLY LEU TRP THR LEU SEQRES 8 A 165 GLU GLY HIS VAL GLY GLU VAL PRO THR ALA HIS GLY ASP SEQRES 9 A 165 SER ALA LEU ARG ASN TRP PHE ALA GLU GLN ARG PRO VAL SEQRES 10 A 165 GLY GLY LEU ALA GLU PRO PHE HIS ASP LEU LEU HIS ARG SEQRES 11 A 165 SER GLY HIS SER ARG VAL SER VAL ILE GLU ALA LEU LEU SEQRES 12 A 165 THR THR TYR PHE ALA GLY LEU ASP PRO VAL PRO LEU LEU SEQRES 13 A 165 GLU ASP THR GLY LEU TYR ASP GLU GLY SEQRES 1 E 8 DG DG DA DT DC DA DT DC SEQRES 1 F 8 DG DA DT DG AS DT DC DC SEQRES 1 B 165 MET PRO LEU THR ASP THR ASP ARG SER GLU ASP PHE LEU SEQRES 2 B 165 ARG ARG VAL ARG GLY LEU LYS ALA ALA ARG THR ALA ASN SEQRES 3 B 165 GLY PRO ARG LEU TYR GLN PRO ILE THR LEU LEU TRP ALA SEQRES 4 B 165 VAL GLY ARG ALA ARG ARG GLY GLU ALA ARG THR LEU ALA SEQRES 5 B 165 TRP ALA ASP THR ASP GLU ALA ILE GLY ALA LEU LEU LYS SEQRES 6 B 165 ARG HIS GLY ALA ARG GLY GLU ARG PRO ARG PRO ASP TYR SEQRES 7 B 165 PRO VAL LEU ALA LEU HIS ARG ALA GLY LEU TRP THR LEU SEQRES 8 B 165 GLU GLY HIS VAL GLY GLU VAL PRO THR ALA HIS GLY ASP SEQRES 9 B 165 SER ALA LEU ARG ASN TRP PHE ALA GLU GLN ARG PRO VAL SEQRES 10 B 165 GLY GLY LEU ALA GLU PRO PHE HIS ASP LEU LEU HIS ARG SEQRES 11 B 165 SER GLY HIS SER ARG VAL SER VAL ILE GLU ALA LEU LEU SEQRES 12 B 165 THR THR TYR PHE ALA GLY LEU ASP PRO VAL PRO LEU LEU SEQRES 13 B 165 GLU ASP THR GLY LEU TYR ASP GLU GLY SEQRES 1 C 8 DG DG DA DT DC DA DT DC SEQRES 1 D 8 DG DA DT DG AS DT DC DC HET AS F 5 21 HET AS D 5 21 HETNAM AS 2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE FORMUL 3 AS 2(C10 H14 N5 O5 P S) HELIX 1 AA1 THR A 4 GLY A 18 1 15 HELIX 2 AA2 LEU A 30 ARG A 45 1 16 HELIX 3 AA3 ALA A 52 GLY A 68 1 17 HELIX 4 AA4 PRO A 76 ALA A 86 1 11 HELIX 5 AA5 ASP A 104 ARG A 115 1 12 HELIX 6 AA6 ALA A 121 SER A 131 1 11 HELIX 7 AA7 SER A 131 PHE A 147 1 17 HELIX 8 AA8 PRO A 152 ASP A 158 1 7 HELIX 9 AA9 ASP B 5 GLY B 18 1 14 HELIX 10 AB1 LEU B 30 ARG B 45 1 16 HELIX 11 AB2 ALA B 52 GLY B 68 1 17 HELIX 12 AB3 PRO B 76 ALA B 86 1 11 HELIX 13 AB4 ASP B 104 ARG B 115 1 12 HELIX 14 AB5 ALA B 121 SER B 131 1 11 HELIX 15 AB6 SER B 131 TYR B 146 1 16 HELIX 16 AB7 PRO B 152 ASP B 158 1 7 SHEET 1 AA1 3 THR A 50 LEU A 51 0 SHEET 2 AA1 3 VAL A 117 LEU A 120 -1 O GLY A 118 N LEU A 51 SHEET 3 AA1 3 TRP A 89 GLU A 92 -1 N THR A 90 O GLY A 119 SHEET 1 AA2 3 THR B 50 LEU B 51 0 SHEET 2 AA2 3 VAL B 117 LEU B 120 -1 O GLY B 118 N LEU B 51 SHEET 3 AA2 3 TRP B 89 GLU B 92 -1 N THR B 90 O GLY B 119 LINK O3' DG F 4 P AS F 5 1555 1555 1.56 LINK O3' AS F 5 P DT F 6 1555 1555 1.54 LINK O3' DG D 4 P AS D 5 1555 1555 1.57 LINK O3' AS D 5 P DT D 6 1555 1555 1.53 CRYST1 97.729 105.279 116.414 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010232 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008590 0.00000