HEADER TRANSPORT PROTEIN 17-JUN-20 7CCS TITLE CONSENSUS MUTATED XCT-CD98HC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCOPROTEIN, 4F2HC,4F2 HEAVY CHAIN ANTIGEN,LYMPHOCYTE COMPND 5 ACTIVATION ANTIGEN 4F2 LARGE SUBUNIT,SOLUTE CARRIER FAMILY 3 MEMBER COMPND 6 2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CONSENSUS MUTATED ANIONIC AMINO ACID TRANSPORTER LIGHT COMPND 10 CHAIN, XC- SYSTEM; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLC3A2, MDU1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293SGNTI-; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: SLC7A11; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293SGNTI- KEYWDS TRANSPORTER, MEMBRANE PROTEIN, COMPLEX, TRANSPORT PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR K.ODA,Y.LEE,M.TAKEMOTO,K.YAMASHITA,T.NISHIZAWA,O.NUREKI REVDAT 2 16-DEC-20 7CCS 1 JRNL REVDAT 1 09-DEC-20 7CCS 0 JRNL AUTH K.ODA,Y.LEE,P.WIRIYASERMKUL,Y.TANAKA,M.TAKEMOTO,K.YAMASHITA, JRNL AUTH 2 S.NAGAMORI,T.NISHIZAWA,O.NUREKI JRNL TITL CONSENSUS MUTAGENESIS APPROACH IMPROVES THE THERMAL JRNL TITL 2 STABILITY OF SYSTEM X C - TRANSPORTER, XCT, AND ENABLES JRNL TITL 3 CRYO-EM ANALYSES. JRNL REF PROTEIN SCI. V. 29 2398 2020 JRNL REFN ESSN 1469-896X JRNL PMID 33016372 JRNL DOI 10.1002/PRO.3966 REMARK 2 REMARK 2 RESOLUTION. 6.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.200 REMARK 3 NUMBER OF PARTICLES : 86395 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: THIS PDB ENTRY CONTAINS AN ISSUE ABOUT PEPTIDE REMARK 3 LINKAGE (BOND OUTLIER). RESIDUES GLU A 213 AND LEU A 214 THAT REMARK 3 ARE NEXT TO EACH OTHER ARE NOT PROPERLY LINKED: DISTANCE BETWEEN REMARK 3 C AND N IS 3.35. THIS WAS INTRODUCED UPON THE FITTING OF THE REMARK 3 HOMOLOGY MODEL INTO THE LOW RESOLUTION CRYO-EM MAP BY USING REMARK 3 ROSETTA. THE MODEL HAS NOT UNDERGONE ANY FURTHER STRUCTURE REMARK 3 REFINEMENT. REMARK 4 REMARK 4 7CCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017368. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CONSENSUS MUTATED XCT-CD98HC REMARK 245 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 49.76 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 GLN A 5 REMARK 465 PRO A 6 REMARK 465 PRO A 7 REMARK 465 GLU A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 ILE A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 VAL A 14 REMARK 465 SER A 15 REMARK 465 ILE A 16 REMARK 465 PRO A 17 REMARK 465 ARG A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 HIS A 24 REMARK 465 SER A 25 REMARK 465 GLU A 26 REMARK 465 ALA A 27 REMARK 465 GLY A 28 REMARK 465 VAL A 29 REMARK 465 GLN A 30 REMARK 465 GLY A 31 REMARK 465 LEU A 32 REMARK 465 SER A 33 REMARK 465 ALA A 34 REMARK 465 GLY A 35 REMARK 465 ASP A 36 REMARK 465 ASP A 37 REMARK 465 SER A 38 REMARK 465 GLU A 39 REMARK 465 LEU A 40 REMARK 465 GLY A 41 REMARK 465 SER A 42 REMARK 465 HIS A 43 REMARK 465 CYS A 44 REMARK 465 VAL A 45 REMARK 465 ALA A 46 REMARK 465 GLN A 47 REMARK 465 THR A 48 REMARK 465 GLY A 49 REMARK 465 LEU A 50 REMARK 465 GLU A 51 REMARK 465 LEU A 52 REMARK 465 LEU A 53 REMARK 465 ALA A 54 REMARK 465 SER A 55 REMARK 465 GLY A 56 REMARK 465 ASP A 57 REMARK 465 PRO A 58 REMARK 465 LEU A 59 REMARK 465 PRO A 60 REMARK 465 SER A 61 REMARK 465 ALA A 62 REMARK 465 SER A 63 REMARK 465 GLN A 64 REMARK 465 ASN A 65 REMARK 465 ALA A 66 REMARK 465 GLU A 67 REMARK 465 MET A 68 REMARK 465 ILE A 69 REMARK 465 GLU A 70 REMARK 465 THR A 71 REMARK 465 GLY A 72 REMARK 465 SER A 73 REMARK 465 ASP A 74 REMARK 465 CYS A 75 REMARK 465 VAL A 76 REMARK 465 THR A 77 REMARK 465 GLN A 78 REMARK 465 ALA A 79 REMARK 465 GLY A 80 REMARK 465 LEU A 81 REMARK 465 GLN A 82 REMARK 465 LEU A 83 REMARK 465 LEU A 84 REMARK 465 ALA A 85 REMARK 465 SER A 86 REMARK 465 SER A 87 REMARK 465 ASP A 88 REMARK 465 PRO A 89 REMARK 465 PRO A 90 REMARK 465 ALA A 91 REMARK 465 LEU A 92 REMARK 465 ALA A 93 REMARK 465 SER A 94 REMARK 465 LYS A 95 REMARK 465 ASN A 96 REMARK 465 ALA A 97 REMARK 465 GLU A 98 REMARK 465 VAL A 99 REMARK 465 THR A 100 REMARK 465 GLY A 101 REMARK 465 THR A 102 REMARK 465 MET A 103 REMARK 465 SER A 104 REMARK 465 GLN A 105 REMARK 465 ASP A 106 REMARK 465 THR A 107 REMARK 465 GLU A 108 REMARK 465 VAL A 109 REMARK 465 ASP A 110 REMARK 465 MET A 111 REMARK 465 LYS A 112 REMARK 465 GLU A 113 REMARK 465 VAL A 114 REMARK 465 GLU A 115 REMARK 465 LEU A 116 REMARK 465 ASN A 117 REMARK 465 GLU A 118 REMARK 465 LEU A 119 REMARK 465 GLU A 120 REMARK 465 PRO A 121 REMARK 465 GLU A 122 REMARK 465 LYS A 123 REMARK 465 GLN A 124 REMARK 465 PRO A 125 REMARK 465 MET A 126 REMARK 465 ASN A 127 REMARK 465 ALA A 128 REMARK 465 ALA A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 ALA A 132 REMARK 465 ALA A 133 REMARK 465 MET A 134 REMARK 465 SER A 135 REMARK 465 LEU A 136 REMARK 465 ALA A 137 REMARK 465 GLY A 138 REMARK 465 ALA A 139 REMARK 465 GLU A 140 REMARK 465 LYS A 141 REMARK 465 ASN A 142 REMARK 465 GLY A 143 REMARK 465 LEU A 144 REMARK 465 VAL A 145 REMARK 465 LYS A 146 REMARK 465 ILE A 147 REMARK 465 LYS A 148 REMARK 465 VAL A 149 REMARK 465 ALA A 150 REMARK 465 GLU A 151 REMARK 465 ASP A 152 REMARK 465 GLU A 153 REMARK 465 ALA A 154 REMARK 465 GLU A 155 REMARK 465 ALA A 156 REMARK 465 ALA A 157 REMARK 465 ALA A 158 REMARK 465 ALA A 159 REMARK 465 ALA A 160 REMARK 465 LYS A 161 REMARK 465 PHE A 162 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 VAL B 6 REMARK 465 VAL B 7 REMARK 465 SER B 8 REMARK 465 THR B 9 REMARK 465 ILE B 10 REMARK 465 SER B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 TYR B 15 REMARK 465 LEU B 16 REMARK 465 GLN B 17 REMARK 465 GLY B 18 REMARK 465 ASN B 19 REMARK 465 VAL B 20 REMARK 465 ASN B 21 REMARK 465 GLY B 22 REMARK 465 ARG B 23 REMARK 465 LEU B 24 REMARK 465 PRO B 25 REMARK 465 SER B 26 REMARK 465 LEU B 27 REMARK 465 GLY B 28 REMARK 465 SER B 29 REMARK 465 LYS B 30 REMARK 465 GLU B 31 REMARK 465 PRO B 32 REMARK 465 PRO B 33 REMARK 465 GLY B 34 REMARK 465 GLN B 35 REMARK 465 GLU B 36 REMARK 465 LYS B 37 REMARK 465 VAL B 38 REMARK 465 GLN B 39 REMARK 465 LEU B 40 REMARK 465 LYS B 41 REMARK 465 ARG B 42 REMARK 465 GLU B 43 REMARK 465 ILE B 44 REMARK 465 ASP B 499 REMARK 465 LYS B 500 REMARK 465 LEU B 501 REMARK 465 ASP B 502 REMARK 465 TYR B 503 REMARK 465 LYS B 504 REMARK 465 ASP B 505 REMARK 465 ASP B 506 REMARK 465 ASP B 507 REMARK 465 ASP B 508 REMARK 465 LYS B 509 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 174 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 PRO A 177 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 PRO A 209 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 TRP A 219 C - N - CA ANGL. DEV. = 30.6 DEGREES REMARK 500 PRO A 283 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 304 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 PRO A 311 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 349 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ILE A 351 C - N - CA ANGL. DEV. = 29.4 DEGREES REMARK 500 ASP A 374 C - N - CA ANGL. DEV. = 20.3 DEGREES REMARK 500 ASP A 374 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 PRO A 447 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 PRO A 488 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 SER A 495 C - N - CA ANGL. DEV. = 18.1 DEGREES REMARK 500 PRO A 501 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 PRO A 549 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 556 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 PRO A 585 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 PRO A 591 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 PRO A 602 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 PRO A 609 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 GLY B 59 C - N - CA ANGL. DEV. = 27.6 DEGREES REMARK 500 GLY B 119 C - N - CA ANGL. DEV. = 27.1 DEGREES REMARK 500 PRO B 120 C - N - CA ANGL. DEV. = 11.3 DEGREES REMARK 500 PRO B 161 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 PRO B 230 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO B 236 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 PRO B 320 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 PRO B 365 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO B 374 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO B 415 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 PRO B 424 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 174 142.08 84.18 REMARK 500 LYS A 218 -90.54 -70.18 REMARK 500 LYS A 256 38.70 71.07 REMARK 500 PRO A 264 78.99 -63.34 REMARK 500 LYS A 267 79.02 -65.97 REMARK 500 LEU A 279 -93.03 -88.66 REMARK 500 PHE A 320 -7.66 67.86 REMARK 500 THR A 322 -159.25 -145.71 REMARK 500 GLN A 323 132.85 -37.54 REMARK 500 ARG A 349 -137.34 -104.14 REMARK 500 LYS A 355 78.13 -67.20 REMARK 500 ASP A 374 -79.79 142.39 REMARK 500 SER A 403 146.37 -170.24 REMARK 500 ALA A 439 61.30 -160.39 REMARK 500 ALA A 448 -50.83 -28.01 REMARK 500 PRO A 462 105.08 -53.36 REMARK 500 ALA A 487 72.12 -151.64 REMARK 500 SER A 495 -32.27 92.18 REMARK 500 ILE A 500 55.15 -146.73 REMARK 500 PRO A 501 99.34 -60.85 REMARK 500 ALA A 544 88.21 -66.04 REMARK 500 ASP A 559 6.54 -60.61 REMARK 500 GLN A 560 -117.64 -134.17 REMARK 500 LEU A 590 125.23 85.68 REMARK 500 ALA A 594 88.58 -69.01 REMARK 500 GLU A 605 65.33 -45.48 REMARK 500 GLU A 611 108.94 -52.88 REMARK 500 ALA A 630 88.78 -68.51 REMARK 500 THR B 56 -81.67 -107.37 REMARK 500 ILE B 58 147.87 145.25 REMARK 500 PRO B 66 -70.96 -56.01 REMARK 500 THR B 73 -115.00 -133.44 REMARK 500 SER B 75 -63.67 -160.42 REMARK 500 LYS B 106 -95.03 -14.66 REMARK 500 PRO B 122 -14.91 -48.00 REMARK 500 ARG B 126 -76.71 -86.53 REMARK 500 ILE B 133 -71.90 -114.14 REMARK 500 PRO B 156 47.44 -71.15 REMARK 500 GLU B 162 108.75 -53.85 REMARK 500 LEU B 163 -124.64 -144.02 REMARK 500 ILE B 165 -33.11 -39.81 REMARK 500 SER B 183 95.02 -5.52 REMARK 500 VAL B 184 -43.95 -22.21 REMARK 500 ILE B 232 72.73 58.67 REMARK 500 LYS B 260 88.90 -49.88 REMARK 500 ALA B 302 90.50 -68.91 REMARK 500 ILE B 321 1.61 -55.41 REMARK 500 LEU B 355 54.25 -95.42 REMARK 500 SER B 356 -125.82 -142.08 REMARK 500 MET B 357 155.85 64.93 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 284 PHE A 285 148.11 REMARK 500 ARG A 349 ASP A 350 -150.00 REMARK 500 LYS A 397 ASP A 398 -147.84 REMARK 500 ALA A 588 SER A 589 -143.18 REMARK 500 ALA B 110 TYR B 111 147.22 REMARK 500 LEU B 199 LEU B 200 148.78 REMARK 500 TYR B 240 SER B 241 -147.81 REMARK 500 LEU B 355 SER B 356 147.20 REMARK 500 SER B 356 MET B 357 142.75 REMARK 500 THR B 459 GLY B 460 148.59 REMARK 500 GLU B 493 VAL B 494 -146.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 284 22.62 REMARK 500 ARG A 349 -22.16 REMARK 500 LYS A 397 -21.96 REMARK 500 ALA A 588 -21.79 REMARK 500 SER A 599 -23.69 REMARK 500 VAL B 81 21.69 REMARK 500 ALA B 110 21.88 REMARK 500 LEU B 132 -21.67 REMARK 500 LEU B 151 -21.98 REMARK 500 PHE B 194 -23.21 REMARK 500 LEU B 199 22.55 REMARK 500 TYR B 240 -21.43 REMARK 500 LEU B 355 22.25 REMARK 500 SER B 356 22.73 REMARK 500 ASP B 384 -23.36 REMARK 500 PHE B 394 -22.63 REMARK 500 THR B 434 -23.04 REMARK 500 THR B 459 22.51 REMARK 500 VAL B 468 -22.97 REMARK 500 GLU B 493 -21.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30341 RELATED DB: EMDB REMARK 900 CONSENSUS MUTATED XCT-CD98HC COMPLEX DBREF 7CCS A 3 631 UNP P08195 4F2_HUMAN 2 630 DBREF 7CCS B 1 509 PDB 7CCS 7CCS 1 509 SEQADV 7CCS GLY A 1 UNP P08195 EXPRESSION TAG SEQADV 7CCS SER A 2 UNP P08195 EXPRESSION TAG SEQRES 1 A 631 GLY SER GLU LEU GLN PRO PRO GLU ALA SER ILE ALA VAL SEQRES 2 A 631 VAL SER ILE PRO ARG GLN LEU PRO GLY SER HIS SER GLU SEQRES 3 A 631 ALA GLY VAL GLN GLY LEU SER ALA GLY ASP ASP SER GLU SEQRES 4 A 631 LEU GLY SER HIS CYS VAL ALA GLN THR GLY LEU GLU LEU SEQRES 5 A 631 LEU ALA SER GLY ASP PRO LEU PRO SER ALA SER GLN ASN SEQRES 6 A 631 ALA GLU MET ILE GLU THR GLY SER ASP CYS VAL THR GLN SEQRES 7 A 631 ALA GLY LEU GLN LEU LEU ALA SER SER ASP PRO PRO ALA SEQRES 8 A 631 LEU ALA SER LYS ASN ALA GLU VAL THR GLY THR MET SER SEQRES 9 A 631 GLN ASP THR GLU VAL ASP MET LYS GLU VAL GLU LEU ASN SEQRES 10 A 631 GLU LEU GLU PRO GLU LYS GLN PRO MET ASN ALA ALA SER SEQRES 11 A 631 GLY ALA ALA MET SER LEU ALA GLY ALA GLU LYS ASN GLY SEQRES 12 A 631 LEU VAL LYS ILE LYS VAL ALA GLU ASP GLU ALA GLU ALA SEQRES 13 A 631 ALA ALA ALA ALA LYS PHE THR GLY LEU SER LYS GLU GLU SEQRES 14 A 631 LEU LEU LYS VAL ALA GLY SER PRO GLY TRP VAL ARG THR SEQRES 15 A 631 ARG TRP ALA LEU LEU LEU LEU PHE TRP LEU GLY TRP LEU SEQRES 16 A 631 GLY MET LEU ALA GLY ALA VAL VAL ILE ILE VAL ARG ALA SEQRES 17 A 631 PRO ARG CYS ARG GLU LEU PRO ALA GLN LYS TRP TRP HIS SEQRES 18 A 631 THR GLY ALA LEU TYR ARG ILE GLY ASP LEU GLN ALA PHE SEQRES 19 A 631 GLN GLY HIS GLY ALA GLY ASN LEU ALA GLY LEU LYS GLY SEQRES 20 A 631 ARG LEU ASP TYR LEU SER SER LEU LYS VAL LYS GLY LEU SEQRES 21 A 631 VAL LEU GLY PRO ILE HIS LYS ASN GLN LYS ASP ASP VAL SEQRES 22 A 631 ALA GLN THR ASP LEU LEU GLN ILE ASP PRO ASN PHE GLY SEQRES 23 A 631 SER LYS GLU ASP PHE ASP SER LEU LEU GLN SER ALA LYS SEQRES 24 A 631 LYS LYS SER ILE ARG VAL ILE LEU ASP LEU THR PRO ASN SEQRES 25 A 631 TYR ARG GLY GLU ASN SER TRP PHE SER THR GLN VAL ASP SEQRES 26 A 631 THR VAL ALA THR LYS VAL LYS ASP ALA LEU GLU PHE TRP SEQRES 27 A 631 LEU GLN ALA GLY VAL ASP GLY PHE GLN VAL ARG ASP ILE SEQRES 28 A 631 GLU ASN LEU LYS ASP ALA SER SER PHE LEU ALA GLU TRP SEQRES 29 A 631 GLN ASN ILE THR LYS GLY PHE SER GLU ASP ARG LEU LEU SEQRES 30 A 631 ILE ALA GLY THR ASN SER SER ASP LEU GLN GLN ILE LEU SEQRES 31 A 631 SER LEU LEU GLU SER ASN LYS ASP LEU LEU LEU THR SER SEQRES 32 A 631 SER TYR LEU SER ASP SER GLY SER THR GLY GLU HIS THR SEQRES 33 A 631 LYS SER LEU VAL THR GLN TYR LEU ASN ALA THR GLY ASN SEQRES 34 A 631 ARG TRP CYS SER TRP SER LEU SER GLN ALA ARG LEU LEU SEQRES 35 A 631 THR SER PHE LEU PRO ALA GLN LEU LEU ARG LEU TYR GLN SEQRES 36 A 631 LEU MET LEU PHE THR LEU PRO GLY THR PRO VAL PHE SER SEQRES 37 A 631 TYR GLY ASP GLU ILE GLY LEU ASP ALA ALA ALA LEU PRO SEQRES 38 A 631 GLY GLN PRO MET GLU ALA PRO VAL MET LEU TRP ASP GLU SEQRES 39 A 631 SER SER PHE PRO ASP ILE PRO GLY ALA VAL SER ALA ASN SEQRES 40 A 631 MET THR VAL LYS GLY GLN SER GLU ASP PRO GLY SER LEU SEQRES 41 A 631 LEU SER LEU PHE ARG ARG LEU SER ASP GLN ARG SER LYS SEQRES 42 A 631 GLU ARG SER LEU LEU HIS GLY ASP PHE HIS ALA PHE SER SEQRES 43 A 631 ALA GLY PRO GLY LEU PHE SER TYR ILE ARG HIS TRP ASP SEQRES 44 A 631 GLN ASN GLU ARG PHE LEU VAL VAL LEU ASN PHE GLY ASP SEQRES 45 A 631 VAL GLY LEU SER ALA GLY LEU GLN ALA SER ASP LEU PRO SEQRES 46 A 631 ALA SER ALA SER LEU PRO ALA LYS ALA ASP LEU LEU LEU SEQRES 47 A 631 SER THR GLN PRO GLY ARG GLU GLU GLY SER PRO LEU GLU SEQRES 48 A 631 LEU GLU ARG LEU LYS LEU GLU PRO HIS GLU GLY LEU LEU SEQRES 49 A 631 LEU ARG PHE PRO TYR ALA ALA SEQRES 1 B 509 MET VAL ARG LYS PRO VAL VAL SER THR ILE SER LYS GLY SEQRES 2 B 509 GLY TYR LEU GLN GLY ASN VAL ASN GLY ARG LEU PRO SER SEQRES 3 B 509 LEU GLY SER LYS GLU PRO PRO GLY GLN GLU LYS VAL GLN SEQRES 4 B 509 LEU LYS ARG GLU ILE THR LEU LEU ASP GLY VAL SER LEU SEQRES 5 B 509 ILE VAL GLY THR ILE ILE GLY ALA GLY ILE PHE VAL SER SEQRES 6 B 509 PRO LYS GLY VAL LEU LYS ASN THR GLY SER VAL GLY LEU SEQRES 7 B 509 SER LEU VAL ILE TRP ALA VAL CYS GLY VAL LEU SER LEU SEQRES 8 B 509 PHE GLY ALA LEU CYS TYR ALA GLU LEU GLY THR THR ILE SEQRES 9 B 509 PRO LYS SER GLY GLY ALA TYR LEU TYR ILE LEU GLU THR SEQRES 10 B 509 PHE GLY PRO LEU PRO ALA PHE LEU ARG GLY TRP ASN GLU SEQRES 11 B 509 LEU LEU ILE ILE ARG PRO ALA SER THR ALA VAL ILE SER SEQRES 12 B 509 LEU ALA PHE GLY ASN TYR ILE LEU GLU PRO PHE PHE PRO SEQRES 13 B 509 THR CYS GLU PRO PRO GLU LEU ALA ILE LYS LEU LEU ALA SEQRES 14 B 509 ALA VAL GLY ILE LEU LEU LEU THR VAL LEU ASN SER LEU SEQRES 15 B 509 SER VAL LYS TRP SER ALA ARG VAL GLN ASP PHE PHE THR SEQRES 16 B 509 ALA ALA LYS LEU LEU ALA LEU LEU ILE ILE ILE VAL PRO SEQRES 17 B 509 GLY VAL VAL GLN LEU ILE LYS GLY GLN THR GLN ASN PHE SEQRES 18 B 509 LYS ASP ALA PHE GLU GLY SER ASP PRO SER ILE GLY GLY SEQRES 19 B 509 LEU PRO LEU ALA PHE TYR SER GLY LEU TYR ALA TYR VAL SEQRES 20 B 509 GLY TRP ASP TYR LEU ASN PHE VAL THR GLU GLU VAL LYS SEQRES 21 B 509 ASN PRO GLU LYS ASN ILE PRO LEU ALA ILE VAL ILE SER SEQRES 22 B 509 MET PRO ILE VAL THR VAL ALA TYR VAL LEU THR ASN VAL SEQRES 23 B 509 ALA TYR PHE THR THR LEU SER PRO GLU GLU LEU LEU LEU SEQRES 24 B 509 SER ASN ALA VAL ALA VAL THR PHE GLY GLU ARG LEU LEU SEQRES 25 B 509 GLY ASN PHE SER TRP ALA VAL PRO ILE PHE VAL ALA LEU SEQRES 26 B 509 SER CYS PHE GLY SER LEU ASN GLY SER LEU PHE ALA MET SEQRES 27 B 509 SER ARG LEU PHE TYR VAL ALA ALA ARG GLU GLY HIS LEU SEQRES 28 B 509 PRO LYS ILE LEU SER MET ILE HIS VAL ARG ARG HIS THR SEQRES 29 B 509 PRO LEU PRO ALA LEU ILE VAL SER GLY PRO LEU THR ALA SEQRES 30 B 509 ILE MET LEU PHE LEU GLY ASP LEU PHE SER LEU ILE ASN SEQRES 31 B 509 PHE MET SER PHE GLY THR TRP LEU PHE TYR GLY LEU VAL SEQRES 32 B 509 VAL ALA GLY LEU ILE TYR LEU ARG TYR LYS LYS PRO ASP SEQRES 33 B 509 LEU HIS ARG PRO ILE LYS VAL PRO LEU PHE ILE PRO ILE SEQRES 34 B 509 LEU PHE LEU LEU THR CYS LEU PHE LEU VAL ALA VAL SER SEQRES 35 B 509 LEU TYR SER ASP PRO VAL ASN CYS GLY ILE GLY PHE VAL SEQRES 36 B 509 ILE ILE LEU THR GLY VAL PRO VAL TYR PHE LEU PHE VAL SEQRES 37 B 509 TYR TRP ASP LYS LYS PRO LYS TRP PHE ARG ARG ILE SER SEQRES 38 B 509 GLU LYS ILE THR ARG HIS LEU GLN LEU LEU LEU GLU VAL SEQRES 39 B 509 VAL PRO GLU GLU ASP LYS LEU ASP TYR LYS ASP ASP ASP SEQRES 40 B 509 ASP LYS HELIX 1 AA1 LYS A 167 LYS A 172 1 6 HELIX 2 AA2 SER A 176 ARG A 207 1 32 HELIX 3 AA3 ASP A 230 GLY A 236 1 7 HELIX 4 AA4 ASN A 241 LYS A 256 1 16 HELIX 5 AA5 SER A 287 LYS A 301 1 15 HELIX 6 AA6 VAL A 324 GLY A 342 1 19 HELIX 7 AA7 ASP A 350 LEU A 354 5 5 HELIX 8 AA8 ASP A 356 SER A 372 1 17 HELIX 9 AA9 ASP A 385 ASN A 396 1 12 HELIX 10 AB1 SER A 404 ASP A 408 1 5 HELIX 11 AB2 THR A 412 GLY A 428 1 17 HELIX 12 AB3 LEU A 441 LEU A 446 1 6 HELIX 13 AB4 PRO A 447 THR A 460 1 14 HELIX 14 AB5 GLY A 470 GLY A 474 5 5 HELIX 15 AB6 ASP A 476 LEU A 480 5 5 HELIX 16 AB7 THR A 509 ASP A 516 1 8 HELIX 17 AB8 SER A 519 GLU A 534 1 16 HELIX 18 AB9 GLU A 534 HIS A 539 1 6 HELIX 19 AC1 GLN A 580 LEU A 584 5 5 HELIX 20 AC2 PRO A 585 SER A 589 5 5 HELIX 21 AC3 GLU A 613 LEU A 615 5 3 HELIX 22 AC4 LEU B 46 GLY B 55 1 10 HELIX 23 AC5 VAL B 64 LYS B 71 1 8 HELIX 24 AC6 VAL B 76 ILE B 104 1 29 HELIX 25 AC7 TYR B 111 GLY B 119 1 9 HELIX 26 AC8 LEU B 121 ILE B 133 1 13 HELIX 27 AC9 ILE B 133 GLU B 152 1 20 HELIX 28 AD1 PRO B 153 PHE B 155 5 3 HELIX 29 AD2 LEU B 163 LEU B 182 1 20 HELIX 30 AD3 VAL B 184 LEU B 202 1 19 HELIX 31 AD4 LEU B 202 GLY B 216 1 15 HELIX 32 AD5 GLY B 216 PHE B 221 1 6 HELIX 33 AD6 LEU B 235 TYR B 246 1 12 HELIX 34 AD7 GLY B 248 VAL B 259 1 12 HELIX 35 AD8 PRO B 262 LYS B 264 5 3 HELIX 36 AD9 ASN B 265 THR B 291 1 27 HELIX 37 AE1 GLU B 295 LEU B 299 5 5 HELIX 38 AE2 ALA B 302 ARG B 310 1 9 HELIX 39 AE3 ASN B 314 VAL B 319 1 6 HELIX 40 AE4 ILE B 321 GLY B 349 1 29 HELIX 41 AE5 PRO B 365 GLY B 383 1 19 HELIX 42 AE6 ASP B 384 LYS B 413 1 30 HELIX 43 AE7 LEU B 425 ASP B 446 1 22 HELIX 44 AE8 VAL B 448 THR B 459 1 12 HELIX 45 AE9 GLY B 460 VAL B 468 1 9 HELIX 46 AF1 PRO B 474 GLU B 493 1 20 SHEET 1 AA1 5 ARG A 304 LEU A 307 0 SHEET 2 AA1 5 GLY A 259 LEU A 262 1 N LEU A 260 O ARG A 304 SHEET 3 AA1 5 LEU A 225 ARG A 227 1 N TYR A 226 O VAL A 261 SHEET 4 AA1 5 THR A 464 SER A 468 1 O PHE A 467 N LEU A 225 SHEET 5 AA1 5 SER A 433 TRP A 434 1 N TRP A 434 O VAL A 466 SHEET 1 AA2 3 GLY A 345 VAL A 348 0 SHEET 2 AA2 3 LEU A 376 THR A 381 1 O GLY A 380 N VAL A 348 SHEET 3 AA2 3 LEU A 400 SER A 403 1 O THR A 402 N THR A 381 SHEET 1 AA3 6 GLY A 540 ALA A 544 0 SHEET 2 AA3 6 LEU A 551 TRP A 558 -1 O ILE A 555 N HIS A 543 SHEET 3 AA3 6 ARG A 563 ASN A 569 -1 O PHE A 564 N ARG A 556 SHEET 4 AA3 6 GLU A 621 PHE A 627 -1 O PHE A 627 N ARG A 563 SHEET 5 AA3 6 LYS A 593 LEU A 598 -1 N LEU A 597 O LEU A 624 SHEET 6 AA3 6 PRO A 609 GLU A 611 -1 O LEU A 610 N ALA A 594 SHEET 1 AA4 2 ILE B 358 HIS B 359 0 SHEET 2 AA4 2 VAL B 494 VAL B 495 -1 O VAL B 495 N ILE B 358 SSBOND 1 CYS A 211 CYS B 158 1555 1555 2.04 CISPEP 1 VAL A 173 ALA A 174 0 6.46 CISPEP 2 HIS A 237 GLY A 238 0 1.04 CISPEP 3 GLU A 373 ASP A 374 0 -1.90 CISPEP 4 GLU A 494 SER A 495 0 3.93 CISPEP 5 SER B 75 VAL B 76 0 0.65 CISPEP 6 ILE B 358 HIS B 359 0 8.58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000