data_7CD5 # _entry.id 7CD5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7CD5 pdb_00007cd5 10.2210/pdb7cd5/pdb WWPDB D_1300017256 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7CD5 _pdbx_database_status.recvd_initial_deposition_date 2020-06-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, T.C.' 1 0000-0001-5915-0407 'Hsiao, Y.Y.' 2 0000-0002-9648-5879 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 601 _citation.page_last 601 _citation.title 'APE1 distinguishes DNA substrates in exonucleolytic cleavage by induced space-filling.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-020-20853-2 _citation.pdbx_database_id_PubMed 33504804 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, T.C.' 1 ? primary 'Lin, C.T.' 2 ? primary 'Chang, K.C.' 3 ? primary 'Guo, K.W.' 4 ? primary 'Wang, S.' 5 0000-0003-3339-8070 primary 'Chu, J.W.' 6 ? primary 'Hsiao, Y.Y.' 7 0000-0002-9648-5879 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7CD5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 107.210 _cell.length_a_esd ? _cell.length_b 107.210 _cell.length_b_esd ? _cell.length_c 230.792 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "DNA(5'-D(*CP*GP*TP*AP*AP*TP*AP*CP*G)-3')" 2739.824 1 ? ? ? ? 2 polymer man 'DNA-(apurinic or apyrimidinic site) endonuclease' 39095.336 1 3.1.-.- ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'APEX nuclease,APEN,Apurinic-apyrimidinic endonuclease 1,AP endonuclease 1,REF-1,Redox factor-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DA)(DA)(DT)(DA)(DC)(DG)' CGTAATACG B ? 2 'polypeptide(L)' no no ;MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMPKRGKKAAADDGEEPKSEPETKKSKGAAKKTEKEAAGEGPVLYED PPDQKTSPSGKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEG YSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVL CGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLL SHSLLPALCDSKIRSKALGSDHCPITLYLAL ; ;MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMPKRGKKAAADDGEEPKSEPETKKSKGAAKKTEKEAAGEGPVLYED PPDQKTSPSGKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEG YSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVL CGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLL SHSLLPALCDSKIRSKALGSDHCPITLYLAL ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DA n 1 6 DT n 1 7 DA n 1 8 DC n 1 9 DG n 2 1 MET n 2 2 GLY n 2 3 SER n 2 4 SER n 2 5 HIS n 2 6 HIS n 2 7 HIS n 2 8 HIS n 2 9 HIS n 2 10 HIS n 2 11 SER n 2 12 SER n 2 13 GLY n 2 14 LEU n 2 15 VAL n 2 16 PRO n 2 17 ARG n 2 18 GLY n 2 19 SER n 2 20 HIS n 2 21 MET n 2 22 ALA n 2 23 SER n 2 24 MET n 2 25 THR n 2 26 GLY n 2 27 GLY n 2 28 GLN n 2 29 GLN n 2 30 MET n 2 31 GLY n 2 32 ARG n 2 33 GLY n 2 34 SER n 2 35 MET n 2 36 PRO n 2 37 LYS n 2 38 ARG n 2 39 GLY n 2 40 LYS n 2 41 LYS n 2 42 ALA n 2 43 ALA n 2 44 ALA n 2 45 ASP n 2 46 ASP n 2 47 GLY n 2 48 GLU n 2 49 GLU n 2 50 PRO n 2 51 LYS n 2 52 SER n 2 53 GLU n 2 54 PRO n 2 55 GLU n 2 56 THR n 2 57 LYS n 2 58 LYS n 2 59 SER n 2 60 LYS n 2 61 GLY n 2 62 ALA n 2 63 ALA n 2 64 LYS n 2 65 LYS n 2 66 THR n 2 67 GLU n 2 68 LYS n 2 69 GLU n 2 70 ALA n 2 71 ALA n 2 72 GLY n 2 73 GLU n 2 74 GLY n 2 75 PRO n 2 76 VAL n 2 77 LEU n 2 78 TYR n 2 79 GLU n 2 80 ASP n 2 81 PRO n 2 82 PRO n 2 83 ASP n 2 84 GLN n 2 85 LYS n 2 86 THR n 2 87 SER n 2 88 PRO n 2 89 SER n 2 90 GLY n 2 91 LYS n 2 92 SER n 2 93 ALA n 2 94 THR n 2 95 LEU n 2 96 LYS n 2 97 ILE n 2 98 CYS n 2 99 SER n 2 100 TRP n 2 101 ASN n 2 102 VAL n 2 103 ASP n 2 104 GLY n 2 105 LEU n 2 106 ARG n 2 107 ALA n 2 108 TRP n 2 109 ILE n 2 110 LYS n 2 111 LYS n 2 112 LYS n 2 113 GLY n 2 114 LEU n 2 115 ASP n 2 116 TRP n 2 117 VAL n 2 118 LYS n 2 119 GLU n 2 120 GLU n 2 121 ALA n 2 122 PRO n 2 123 ASP n 2 124 ILE n 2 125 LEU n 2 126 CYS n 2 127 LEU n 2 128 GLN n 2 129 GLU n 2 130 THR n 2 131 LYS n 2 132 CYS n 2 133 SER n 2 134 GLU n 2 135 ASN n 2 136 LYS n 2 137 LEU n 2 138 PRO n 2 139 ALA n 2 140 GLU n 2 141 LEU n 2 142 GLN n 2 143 GLU n 2 144 LEU n 2 145 PRO n 2 146 GLY n 2 147 LEU n 2 148 THR n 2 149 HIS n 2 150 GLN n 2 151 TYR n 2 152 TRP n 2 153 SER n 2 154 ALA n 2 155 PRO n 2 156 SER n 2 157 ASP n 2 158 LYS n 2 159 GLU n 2 160 GLY n 2 161 TYR n 2 162 SER n 2 163 GLY n 2 164 VAL n 2 165 GLY n 2 166 LEU n 2 167 LEU n 2 168 SER n 2 169 ARG n 2 170 GLN n 2 171 CYS n 2 172 PRO n 2 173 LEU n 2 174 LYS n 2 175 VAL n 2 176 SER n 2 177 TYR n 2 178 GLY n 2 179 ILE n 2 180 GLY n 2 181 GLU n 2 182 GLU n 2 183 GLU n 2 184 HIS n 2 185 ASP n 2 186 GLN n 2 187 GLU n 2 188 GLY n 2 189 ARG n 2 190 VAL n 2 191 ILE n 2 192 VAL n 2 193 ALA n 2 194 GLU n 2 195 PHE n 2 196 GLU n 2 197 SER n 2 198 PHE n 2 199 VAL n 2 200 LEU n 2 201 VAL n 2 202 THR n 2 203 ALA n 2 204 TYR n 2 205 VAL n 2 206 PRO n 2 207 ASN n 2 208 ALA n 2 209 GLY n 2 210 ARG n 2 211 GLY n 2 212 LEU n 2 213 VAL n 2 214 ARG n 2 215 LEU n 2 216 GLU n 2 217 TYR n 2 218 ARG n 2 219 GLN n 2 220 ARG n 2 221 TRP n 2 222 ASP n 2 223 GLU n 2 224 ALA n 2 225 PHE n 2 226 ARG n 2 227 LYS n 2 228 PHE n 2 229 LEU n 2 230 LYS n 2 231 ASP n 2 232 LEU n 2 233 ALA n 2 234 SER n 2 235 ARG n 2 236 LYS n 2 237 PRO n 2 238 LEU n 2 239 VAL n 2 240 LEU n 2 241 CYS n 2 242 GLY n 2 243 ASP n 2 244 LEU n 2 245 ASN n 2 246 VAL n 2 247 ALA n 2 248 HIS n 2 249 GLU n 2 250 GLU n 2 251 ILE n 2 252 ASP n 2 253 LEU n 2 254 ARG n 2 255 ASN n 2 256 PRO n 2 257 LYS n 2 258 GLY n 2 259 ASN n 2 260 LYS n 2 261 LYS n 2 262 ASN n 2 263 ALA n 2 264 GLY n 2 265 PHE n 2 266 THR n 2 267 PRO n 2 268 GLN n 2 269 GLU n 2 270 ARG n 2 271 GLN n 2 272 GLY n 2 273 PHE n 2 274 GLY n 2 275 GLU n 2 276 LEU n 2 277 LEU n 2 278 GLN n 2 279 ALA n 2 280 VAL n 2 281 PRO n 2 282 LEU n 2 283 ALA n 2 284 ASP n 2 285 SER n 2 286 PHE n 2 287 ARG n 2 288 HIS n 2 289 LEU n 2 290 TYR n 2 291 PRO n 2 292 ASN n 2 293 THR n 2 294 ALA n 2 295 TYR n 2 296 ALA n 2 297 TYR n 2 298 THR n 2 299 PHE n 2 300 TRP n 2 301 THR n 2 302 TYR n 2 303 MET n 2 304 MET n 2 305 ASN n 2 306 ALA n 2 307 ARG n 2 308 SER n 2 309 LYS n 2 310 ASN n 2 311 VAL n 2 312 GLY n 2 313 TRP n 2 314 ARG n 2 315 LEU n 2 316 ASP n 2 317 TYR n 2 318 PHE n 2 319 LEU n 2 320 LEU n 2 321 SER n 2 322 HIS n 2 323 SER n 2 324 LEU n 2 325 LEU n 2 326 PRO n 2 327 ALA n 2 328 LEU n 2 329 CYS n 2 330 ASP n 2 331 SER n 2 332 LYS n 2 333 ILE n 2 334 ARG n 2 335 SER n 2 336 LYS n 2 337 ALA n 2 338 LEU n 2 339 GLY n 2 340 SER n 2 341 ASP n 2 342 HIS n 2 343 CYS n 2 344 PRO n 2 345 ILE n 2 346 THR n 2 347 LEU n 2 348 TYR n 2 349 LEU n 2 350 ALA n 2 351 LEU n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 351 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Apex1, Ape, Apex, Ref1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7CD5 7CD5 ? 1 ? 1 2 UNP APEX1_MOUSE P28352 ? 2 ;MPKRGKKAAADDGEEPKSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSPSGKSATLKICSWNVDGLRAWIKKKGL DWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAE FESFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFG ELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL ; 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7CD5 B 1 ? 9 ? 7CD5 1 ? 9 ? 1 9 2 2 7CD5 A 35 ? 351 ? P28352 1 ? 317 ? 1 317 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 7CD5 MET A 1 ? UNP P28352 ? ? 'initiating methionine' -33 1 2 7CD5 GLY A 2 ? UNP P28352 ? ? 'expression tag' -32 2 2 7CD5 SER A 3 ? UNP P28352 ? ? 'expression tag' -31 3 2 7CD5 SER A 4 ? UNP P28352 ? ? 'expression tag' -30 4 2 7CD5 HIS A 5 ? UNP P28352 ? ? 'expression tag' -29 5 2 7CD5 HIS A 6 ? UNP P28352 ? ? 'expression tag' -28 6 2 7CD5 HIS A 7 ? UNP P28352 ? ? 'expression tag' -27 7 2 7CD5 HIS A 8 ? UNP P28352 ? ? 'expression tag' -26 8 2 7CD5 HIS A 9 ? UNP P28352 ? ? 'expression tag' -25 9 2 7CD5 HIS A 10 ? UNP P28352 ? ? 'expression tag' -24 10 2 7CD5 SER A 11 ? UNP P28352 ? ? 'expression tag' -23 11 2 7CD5 SER A 12 ? UNP P28352 ? ? 'expression tag' -22 12 2 7CD5 GLY A 13 ? UNP P28352 ? ? 'expression tag' -21 13 2 7CD5 LEU A 14 ? UNP P28352 ? ? 'expression tag' -20 14 2 7CD5 VAL A 15 ? UNP P28352 ? ? 'expression tag' -19 15 2 7CD5 PRO A 16 ? UNP P28352 ? ? 'expression tag' -18 16 2 7CD5 ARG A 17 ? UNP P28352 ? ? 'expression tag' -17 17 2 7CD5 GLY A 18 ? UNP P28352 ? ? 'expression tag' -16 18 2 7CD5 SER A 19 ? UNP P28352 ? ? 'expression tag' -15 19 2 7CD5 HIS A 20 ? UNP P28352 ? ? 'expression tag' -14 20 2 7CD5 MET A 21 ? UNP P28352 ? ? 'expression tag' -13 21 2 7CD5 ALA A 22 ? UNP P28352 ? ? 'expression tag' -12 22 2 7CD5 SER A 23 ? UNP P28352 ? ? 'expression tag' -11 23 2 7CD5 MET A 24 ? UNP P28352 ? ? 'expression tag' -10 24 2 7CD5 THR A 25 ? UNP P28352 ? ? 'expression tag' -9 25 2 7CD5 GLY A 26 ? UNP P28352 ? ? 'expression tag' -8 26 2 7CD5 GLY A 27 ? UNP P28352 ? ? 'expression tag' -7 27 2 7CD5 GLN A 28 ? UNP P28352 ? ? 'expression tag' -6 28 2 7CD5 GLN A 29 ? UNP P28352 ? ? 'expression tag' -5 29 2 7CD5 MET A 30 ? UNP P28352 ? ? 'expression tag' -4 30 2 7CD5 GLY A 31 ? UNP P28352 ? ? 'expression tag' -3 31 2 7CD5 ARG A 32 ? UNP P28352 ? ? 'expression tag' -2 32 2 7CD5 GLY A 33 ? UNP P28352 ? ? 'expression tag' -1 33 2 7CD5 SER A 34 ? UNP P28352 ? ? 'expression tag' 0 34 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7CD5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.58 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 73.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris pH 6.5, 25% v/v Polyethylene glycol 300' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-02-23 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97622 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL13C1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97622 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL13C1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7CD5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.700 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22366 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.500 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.300 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.112 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.093 _reflns.pdbx_Rpim_I_all 0.020 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 431037 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.700 2.800 ? ? ? ? ? ? 2061 94.900 ? ? ? ? 0.499 ? ? ? ? ? ? ? ? 13.600 ? 0.534 ? ? 0.517 0.133 ? 1 1 0.938 ? ? 2.800 2.910 ? ? ? ? ? ? 2199 100.000 ? ? ? ? 0.468 ? ? ? ? ? ? ? ? 16.400 ? 0.550 ? ? 0.483 0.117 ? 2 1 0.961 ? ? 2.910 3.040 ? ? ? ? ? ? 2183 100.000 ? ? ? ? 0.398 ? ? ? ? ? ? ? ? 17.600 ? 0.598 ? ? 0.409 0.095 ? 3 1 0.979 ? ? 3.040 3.200 ? ? ? ? ? ? 2206 100.000 ? ? ? ? 0.267 ? ? ? ? ? ? ? ? 18.800 ? 0.710 ? ? 0.274 0.062 ? 4 1 0.994 ? ? 3.200 3.400 ? ? ? ? ? ? 2204 100.000 ? ? ? ? 0.171 ? ? ? ? ? ? ? ? 20.100 ? 0.822 ? ? 0.175 0.038 ? 5 1 0.998 ? ? 3.400 3.660 ? ? ? ? ? ? 2224 99.900 ? ? ? ? 0.130 ? ? ? ? ? ? ? ? 20.700 ? 0.966 ? ? 0.133 0.029 ? 6 1 0.998 ? ? 3.660 4.030 ? ? ? ? ? ? 2244 100.000 ? ? ? ? 0.094 ? ? ? ? ? ? ? ? 21.300 ? 1.067 ? ? 0.096 0.020 ? 7 1 0.999 ? ? 4.030 4.610 ? ? ? ? ? ? 2259 100.000 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 21.800 ? 1.297 ? ? 0.073 0.015 ? 8 1 0.999 ? ? 4.610 5.800 ? ? ? ? ? ? 2309 100.000 ? ? ? ? 0.082 ? ? ? ? ? ? ? ? 21.300 ? 2.237 ? ? 0.084 0.018 ? 9 1 0.999 ? ? 5.800 30.000 ? ? ? ? ? ? 2477 99.900 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? 20.400 ? 1.686 ? ? 0.045 0.010 ? 10 1 1.000 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 151.000 _refine.B_iso_mean 65.2002 _refine.B_iso_min 32.070 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7CD5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 29.8920 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22276 _refine.ls_number_reflns_R_free 1669 _refine.ls_number_reflns_R_work 20607 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.8400 _refine.ls_percent_reflns_R_free 7.4900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1910 _refine.ls_R_factor_R_free 0.2154 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1889 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.440 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1HD7 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.4400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 29.8920 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2374 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 286 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2214 _refine_hist.pdbx_number_atoms_nucleic_acid 160 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7002 2.7796 . . 126 1654 99.0000 . . . 0.3127 0.0000 0.3127 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7796 2.8692 . . 139 1676 100.0000 . . . 0.3470 0.0000 0.2964 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8692 2.9717 . . 153 1669 100.0000 . . . 0.3170 0.0000 0.2667 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9717 3.0905 . . 123 1689 100.0000 . . . 0.3123 0.0000 0.2594 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0905 3.2310 . . 130 1690 100.0000 . . . 0.2602 0.0000 0.2226 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2310 3.4011 . . 140 1679 100.0000 . . . 0.2230 0.0000 0.2092 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4011 3.6139 . . 135 1717 100.0000 . . . 0.2316 0.0000 0.1965 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6139 3.8924 . . 154 1689 100.0000 . . . 0.2015 0.0000 0.1714 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.8924 4.2831 . . 136 1723 100.0000 . . . 0.1697 0.0000 0.1603 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.2831 4.9005 . . 150 1740 100.0000 . . . 0.1569 0.0000 0.1423 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.9005 6.1652 . . 133 1777 100.0000 . . . 0.1867 0.0000 0.1694 . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.1652 29.8920 . . 150 1904 100.0000 . . . 0.2256 0.0000 0.1803 . . . . . . . . . . . # _struct.entry_id 7CD5 _struct.title 'mAPE1-blunt-ended dsDNA product complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7CD5 _struct_keywords.text 'APE1, protein-nucleic acid interaction, exonuclease, DNA repair, DNA BINDING PROTEIN, HYDROLASE-DNA complex' _struct_keywords.pdbx_keywords HYDROLASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY B 104 ? LYS B 111 ? GLY A 70 LYS A 77 1 ? 8 HELX_P HELX_P2 AA2 LYS B 112 ? ALA B 121 ? LYS A 78 ALA A 87 1 ? 10 HELX_P HELX_P3 AA3 SER B 133 ? LEU B 137 ? SER A 99 LEU A 103 5 ? 5 HELX_P HELX_P4 AA4 PRO B 138 ? GLU B 143 ? PRO A 104 GLU A 109 1 ? 6 HELX_P HELX_P5 AA5 GLU B 181 ? ASP B 185 ? GLU A 147 ASP A 151 5 ? 5 HELX_P HELX_P6 AA6 GLY B 209 ? VAL B 213 ? GLY A 175 VAL A 179 5 ? 5 HELX_P HELX_P7 AA7 ARG B 214 ? LYS B 236 ? ARG A 180 LYS A 202 1 ? 23 HELX_P HELX_P8 AA8 GLU B 249 ? LEU B 253 ? GLU A 215 LEU A 219 5 ? 5 HELX_P HELX_P9 AA9 PRO B 256 ? LYS B 260 ? PRO A 222 LYS A 226 5 ? 5 HELX_P HELX_P10 AB1 THR B 266 ? VAL B 280 ? THR A 232 VAL A 246 1 ? 15 HELX_P HELX_P11 AB2 SER B 285 ? TYR B 290 ? SER A 251 TYR A 256 1 ? 6 HELX_P HELX_P12 AB3 TYR B 302 ? ALA B 306 ? TYR A 268 ALA A 272 5 ? 5 HELX_P HELX_P13 AB4 SER B 323 ? PRO B 326 ? SER A 289 PRO A 292 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 8 N3 ? ? B DG 2 B DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 8 O2 ? ? B DG 2 B DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 8 N4 ? ? B DG 2 B DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 7 N1 ? ? B DT 3 B DA 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 7 N6 ? ? B DT 3 B DA 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 6 N3 ? ? B DA 4 B DT 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 6 O4 ? ? B DA 4 B DT 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 4 N1 ? ? B DT 6 B DA 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 4 N6 ? ? B DT 6 B DA 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 3 N3 ? ? B DA 7 B DT 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 3 O4 ? ? B DA 7 B DT 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 2 N1 ? ? B DC 8 B DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 2 O6 ? ? B DC 8 B DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 2 N2 ? ? B DC 8 B DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 280 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 246 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 281 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 247 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.77 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS B 149 ? SER B 153 ? HIS A 115 SER A 119 AA1 2 VAL B 164 ? SER B 168 ? VAL A 130 SER A 134 AA1 3 ILE B 124 ? GLN B 128 ? ILE A 90 GLN A 94 AA1 4 LEU B 95 ? ASN B 101 ? LEU A 61 ASN A 67 AA1 5 ILE B 345 ? LEU B 349 ? ILE A 311 LEU A 315 AA1 6 LEU B 328 ? ILE B 333 ? LEU A 294 ILE A 299 AA2 1 LYS B 174 ? TYR B 177 ? LYS A 140 TYR A 143 AA2 2 VAL B 190 ? GLU B 194 ? VAL A 156 GLU A 160 AA2 3 VAL B 199 ? TYR B 204 ? VAL A 165 TYR A 170 AA2 4 LEU B 238 ? ASP B 243 ? LEU A 204 ASP A 209 AA2 5 ASP B 316 ? SER B 321 ? ASP A 282 SER A 287 AA2 6 LEU B 282 ? ASP B 284 ? LEU A 248 ASP A 250 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS B 149 ? N HIS A 115 O SER B 168 ? O SER A 134 AA1 2 3 O LEU B 167 ? O LEU A 133 N LEU B 125 ? N LEU A 91 AA1 3 4 O CYS B 126 ? O CYS A 92 N CYS B 98 ? N CYS A 64 AA1 4 5 N ILE B 97 ? N ILE A 63 O LEU B 347 ? O LEU A 313 AA1 5 6 O THR B 346 ? O THR A 312 N LYS B 332 ? N LYS A 298 AA2 1 2 N LYS B 174 ? N LYS A 140 O GLU B 194 ? O GLU A 160 AA2 2 3 N ALA B 193 ? N ALA A 159 O LEU B 200 ? O LEU A 166 AA2 3 4 N VAL B 201 ? N VAL A 167 O VAL B 239 ? O VAL A 205 AA2 4 5 N LEU B 240 ? N LEU A 206 O LEU B 319 ? O LEU A 285 AA2 5 6 O LEU B 320 ? O LEU A 286 N ALA B 283 ? N ALA A 249 # _atom_sites.entry_id 7CD5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.009327 _atom_sites.fract_transf_matrix[1][2] 0.005385 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010770 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004333 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC B . n A 1 2 DG 2 2 2 DG DG B . n A 1 3 DT 3 3 3 DT DT B . n A 1 4 DA 4 4 4 DA DA B . n A 1 5 DA 5 5 5 DA DA B . n A 1 6 DT 6 6 6 DT DT B . n A 1 7 DA 7 7 7 DA DA B . n A 1 8 DC 8 8 8 DC DC B . n A 1 9 DG 9 9 ? ? ? B . n B 2 1 MET 1 -33 ? ? ? A . n B 2 2 GLY 2 -32 ? ? ? A . n B 2 3 SER 3 -31 ? ? ? A . n B 2 4 SER 4 -30 ? ? ? A . n B 2 5 HIS 5 -29 ? ? ? A . n B 2 6 HIS 6 -28 ? ? ? A . n B 2 7 HIS 7 -27 ? ? ? A . n B 2 8 HIS 8 -26 ? ? ? A . n B 2 9 HIS 9 -25 ? ? ? A . n B 2 10 HIS 10 -24 ? ? ? A . n B 2 11 SER 11 -23 ? ? ? A . n B 2 12 SER 12 -22 ? ? ? A . n B 2 13 GLY 13 -21 ? ? ? A . n B 2 14 LEU 14 -20 ? ? ? A . n B 2 15 VAL 15 -19 ? ? ? A . n B 2 16 PRO 16 -18 ? ? ? A . n B 2 17 ARG 17 -17 ? ? ? A . n B 2 18 GLY 18 -16 ? ? ? A . n B 2 19 SER 19 -15 ? ? ? A . n B 2 20 HIS 20 -14 ? ? ? A . n B 2 21 MET 21 -13 ? ? ? A . n B 2 22 ALA 22 -12 ? ? ? A . n B 2 23 SER 23 -11 ? ? ? A . n B 2 24 MET 24 -10 ? ? ? A . n B 2 25 THR 25 -9 ? ? ? A . n B 2 26 GLY 26 -8 ? ? ? A . n B 2 27 GLY 27 -7 ? ? ? A . n B 2 28 GLN 28 -6 ? ? ? A . n B 2 29 GLN 29 -5 ? ? ? A . n B 2 30 MET 30 -4 ? ? ? A . n B 2 31 GLY 31 -3 ? ? ? A . n B 2 32 ARG 32 -2 ? ? ? A . n B 2 33 GLY 33 -1 ? ? ? A . n B 2 34 SER 34 0 ? ? ? A . n B 2 35 MET 35 1 ? ? ? A . n B 2 36 PRO 36 2 ? ? ? A . n B 2 37 LYS 37 3 ? ? ? A . n B 2 38 ARG 38 4 ? ? ? A . n B 2 39 GLY 39 5 ? ? ? A . n B 2 40 LYS 40 6 ? ? ? A . n B 2 41 LYS 41 7 ? ? ? A . n B 2 42 ALA 42 8 ? ? ? A . n B 2 43 ALA 43 9 ? ? ? A . n B 2 44 ALA 44 10 ? ? ? A . n B 2 45 ASP 45 11 ? ? ? A . n B 2 46 ASP 46 12 ? ? ? A . n B 2 47 GLY 47 13 ? ? ? A . n B 2 48 GLU 48 14 ? ? ? A . n B 2 49 GLU 49 15 ? ? ? A . n B 2 50 PRO 50 16 ? ? ? A . n B 2 51 LYS 51 17 ? ? ? A . n B 2 52 SER 52 18 ? ? ? A . n B 2 53 GLU 53 19 ? ? ? A . n B 2 54 PRO 54 20 ? ? ? A . n B 2 55 GLU 55 21 ? ? ? A . n B 2 56 THR 56 22 ? ? ? A . n B 2 57 LYS 57 23 ? ? ? A . n B 2 58 LYS 58 24 ? ? ? A . n B 2 59 SER 59 25 ? ? ? A . n B 2 60 LYS 60 26 ? ? ? A . n B 2 61 GLY 61 27 ? ? ? A . n B 2 62 ALA 62 28 ? ? ? A . n B 2 63 ALA 63 29 ? ? ? A . n B 2 64 LYS 64 30 ? ? ? A . n B 2 65 LYS 65 31 ? ? ? A . n B 2 66 THR 66 32 ? ? ? A . n B 2 67 GLU 67 33 ? ? ? A . n B 2 68 LYS 68 34 ? ? ? A . n B 2 69 GLU 69 35 ? ? ? A . n B 2 70 ALA 70 36 ? ? ? A . n B 2 71 ALA 71 37 ? ? ? A . n B 2 72 GLY 72 38 ? ? ? A . n B 2 73 GLU 73 39 ? ? ? A . n B 2 74 GLY 74 40 40 GLY GLY A . n B 2 75 PRO 75 41 41 PRO PRO A . n B 2 76 VAL 76 42 42 VAL VAL A . n B 2 77 LEU 77 43 43 LEU LEU A . n B 2 78 TYR 78 44 44 TYR TYR A . n B 2 79 GLU 79 45 45 GLU GLU A . n B 2 80 ASP 80 46 46 ASP ASP A . n B 2 81 PRO 81 47 47 PRO PRO A . n B 2 82 PRO 82 48 48 PRO PRO A . n B 2 83 ASP 83 49 49 ASP ASP A . n B 2 84 GLN 84 50 50 GLN GLN A . n B 2 85 LYS 85 51 51 LYS LYS A . n B 2 86 THR 86 52 52 THR THR A . n B 2 87 SER 87 53 53 SER SER A . n B 2 88 PRO 88 54 54 PRO PRO A . n B 2 89 SER 89 55 55 SER SER A . n B 2 90 GLY 90 56 56 GLY GLY A . n B 2 91 LYS 91 57 57 LYS LYS A . n B 2 92 SER 92 58 58 SER SER A . n B 2 93 ALA 93 59 59 ALA ALA A . n B 2 94 THR 94 60 60 THR THR A . n B 2 95 LEU 95 61 61 LEU LEU A . n B 2 96 LYS 96 62 62 LYS LYS A . n B 2 97 ILE 97 63 63 ILE ILE A . n B 2 98 CYS 98 64 64 CYS CYS A . n B 2 99 SER 99 65 65 SER SER A . n B 2 100 TRP 100 66 66 TRP TRP A . n B 2 101 ASN 101 67 67 ASN ASN A . n B 2 102 VAL 102 68 68 VAL VAL A . n B 2 103 ASP 103 69 69 ASP ASP A . n B 2 104 GLY 104 70 70 GLY GLY A . n B 2 105 LEU 105 71 71 LEU LEU A . n B 2 106 ARG 106 72 72 ARG ARG A . n B 2 107 ALA 107 73 73 ALA ALA A . n B 2 108 TRP 108 74 74 TRP TRP A . n B 2 109 ILE 109 75 75 ILE ILE A . n B 2 110 LYS 110 76 76 LYS LYS A . n B 2 111 LYS 111 77 77 LYS LYS A . n B 2 112 LYS 112 78 78 LYS LYS A . n B 2 113 GLY 113 79 79 GLY GLY A . n B 2 114 LEU 114 80 80 LEU LEU A . n B 2 115 ASP 115 81 81 ASP ASP A . n B 2 116 TRP 116 82 82 TRP TRP A . n B 2 117 VAL 117 83 83 VAL VAL A . n B 2 118 LYS 118 84 84 LYS LYS A . n B 2 119 GLU 119 85 85 GLU GLU A . n B 2 120 GLU 120 86 86 GLU GLU A . n B 2 121 ALA 121 87 87 ALA ALA A . n B 2 122 PRO 122 88 88 PRO PRO A . n B 2 123 ASP 123 89 89 ASP ASP A . n B 2 124 ILE 124 90 90 ILE ILE A . n B 2 125 LEU 125 91 91 LEU LEU A . n B 2 126 CYS 126 92 92 CYS CYS A . n B 2 127 LEU 127 93 93 LEU LEU A . n B 2 128 GLN 128 94 94 GLN GLN A . n B 2 129 GLU 129 95 95 GLU GLU A . n B 2 130 THR 130 96 96 THR THR A . n B 2 131 LYS 131 97 97 LYS LYS A . n B 2 132 CYS 132 98 98 CYS CYS A . n B 2 133 SER 133 99 99 SER SER A . n B 2 134 GLU 134 100 100 GLU GLU A . n B 2 135 ASN 135 101 101 ASN ASN A . n B 2 136 LYS 136 102 102 LYS LYS A . n B 2 137 LEU 137 103 103 LEU LEU A . n B 2 138 PRO 138 104 104 PRO PRO A . n B 2 139 ALA 139 105 105 ALA ALA A . n B 2 140 GLU 140 106 106 GLU GLU A . n B 2 141 LEU 141 107 107 LEU LEU A . n B 2 142 GLN 142 108 108 GLN GLN A . n B 2 143 GLU 143 109 109 GLU GLU A . n B 2 144 LEU 144 110 110 LEU LEU A . n B 2 145 PRO 145 111 111 PRO PRO A . n B 2 146 GLY 146 112 112 GLY GLY A . n B 2 147 LEU 147 113 113 LEU LEU A . n B 2 148 THR 148 114 114 THR THR A . n B 2 149 HIS 149 115 115 HIS HIS A . n B 2 150 GLN 150 116 116 GLN GLN A . n B 2 151 TYR 151 117 117 TYR TYR A . n B 2 152 TRP 152 118 118 TRP TRP A . n B 2 153 SER 153 119 119 SER SER A . n B 2 154 ALA 154 120 120 ALA ALA A . n B 2 155 PRO 155 121 121 PRO PRO A . n B 2 156 SER 156 122 122 SER SER A . n B 2 157 ASP 157 123 123 ASP ASP A . n B 2 158 LYS 158 124 124 LYS LYS A . n B 2 159 GLU 159 125 125 GLU GLU A . n B 2 160 GLY 160 126 126 GLY GLY A . n B 2 161 TYR 161 127 127 TYR TYR A . n B 2 162 SER 162 128 128 SER SER A . n B 2 163 GLY 163 129 129 GLY GLY A . n B 2 164 VAL 164 130 130 VAL VAL A . n B 2 165 GLY 165 131 131 GLY GLY A . n B 2 166 LEU 166 132 132 LEU LEU A . n B 2 167 LEU 167 133 133 LEU LEU A . n B 2 168 SER 168 134 134 SER SER A . n B 2 169 ARG 169 135 135 ARG ARG A . n B 2 170 GLN 170 136 136 GLN GLN A . n B 2 171 CYS 171 137 137 CYS CYS A . n B 2 172 PRO 172 138 138 PRO PRO A . n B 2 173 LEU 173 139 139 LEU LEU A . n B 2 174 LYS 174 140 140 LYS LYS A . n B 2 175 VAL 175 141 141 VAL VAL A . n B 2 176 SER 176 142 142 SER SER A . n B 2 177 TYR 177 143 143 TYR TYR A . n B 2 178 GLY 178 144 144 GLY GLY A . n B 2 179 ILE 179 145 145 ILE ILE A . n B 2 180 GLY 180 146 146 GLY GLY A . n B 2 181 GLU 181 147 147 GLU GLU A . n B 2 182 GLU 182 148 148 GLU GLU A . n B 2 183 GLU 183 149 149 GLU GLU A . n B 2 184 HIS 184 150 150 HIS HIS A . n B 2 185 ASP 185 151 151 ASP ASP A . n B 2 186 GLN 186 152 152 GLN GLN A . n B 2 187 GLU 187 153 153 GLU GLU A . n B 2 188 GLY 188 154 154 GLY GLY A . n B 2 189 ARG 189 155 155 ARG ARG A . n B 2 190 VAL 190 156 156 VAL VAL A . n B 2 191 ILE 191 157 157 ILE ILE A . n B 2 192 VAL 192 158 158 VAL VAL A . n B 2 193 ALA 193 159 159 ALA ALA A . n B 2 194 GLU 194 160 160 GLU GLU A . n B 2 195 PHE 195 161 161 PHE PHE A . n B 2 196 GLU 196 162 162 GLU GLU A . n B 2 197 SER 197 163 163 SER SER A . n B 2 198 PHE 198 164 164 PHE PHE A . n B 2 199 VAL 199 165 165 VAL VAL A . n B 2 200 LEU 200 166 166 LEU LEU A . n B 2 201 VAL 201 167 167 VAL VAL A . n B 2 202 THR 202 168 168 THR THR A . n B 2 203 ALA 203 169 169 ALA ALA A . n B 2 204 TYR 204 170 170 TYR TYR A . n B 2 205 VAL 205 171 171 VAL VAL A . n B 2 206 PRO 206 172 172 PRO PRO A . n B 2 207 ASN 207 173 173 ASN ASN A . n B 2 208 ALA 208 174 174 ALA ALA A . n B 2 209 GLY 209 175 175 GLY GLY A . n B 2 210 ARG 210 176 176 ARG ARG A . n B 2 211 GLY 211 177 177 GLY GLY A . n B 2 212 LEU 212 178 178 LEU LEU A . n B 2 213 VAL 213 179 179 VAL VAL A . n B 2 214 ARG 214 180 180 ARG ARG A . n B 2 215 LEU 215 181 181 LEU LEU A . n B 2 216 GLU 216 182 182 GLU GLU A . n B 2 217 TYR 217 183 183 TYR TYR A . n B 2 218 ARG 218 184 184 ARG ARG A . n B 2 219 GLN 219 185 185 GLN GLN A . n B 2 220 ARG 220 186 186 ARG ARG A . n B 2 221 TRP 221 187 187 TRP TRP A . n B 2 222 ASP 222 188 188 ASP ASP A . n B 2 223 GLU 223 189 189 GLU GLU A . n B 2 224 ALA 224 190 190 ALA ALA A . n B 2 225 PHE 225 191 191 PHE PHE A . n B 2 226 ARG 226 192 192 ARG ARG A . n B 2 227 LYS 227 193 193 LYS LYS A . n B 2 228 PHE 228 194 194 PHE PHE A . n B 2 229 LEU 229 195 195 LEU LEU A . n B 2 230 LYS 230 196 196 LYS LYS A . n B 2 231 ASP 231 197 197 ASP ASP A . n B 2 232 LEU 232 198 198 LEU LEU A . n B 2 233 ALA 233 199 199 ALA ALA A . n B 2 234 SER 234 200 200 SER SER A . n B 2 235 ARG 235 201 201 ARG ARG A . n B 2 236 LYS 236 202 202 LYS LYS A . n B 2 237 PRO 237 203 203 PRO PRO A . n B 2 238 LEU 238 204 204 LEU LEU A . n B 2 239 VAL 239 205 205 VAL VAL A . n B 2 240 LEU 240 206 206 LEU LEU A . n B 2 241 CYS 241 207 207 CYS CYS A . n B 2 242 GLY 242 208 208 GLY GLY A . n B 2 243 ASP 243 209 209 ASP ASP A . n B 2 244 LEU 244 210 210 LEU LEU A . n B 2 245 ASN 245 211 211 ASN ASN A . n B 2 246 VAL 246 212 212 VAL VAL A . n B 2 247 ALA 247 213 213 ALA ALA A . n B 2 248 HIS 248 214 214 HIS HIS A . n B 2 249 GLU 249 215 215 GLU GLU A . n B 2 250 GLU 250 216 216 GLU GLU A . n B 2 251 ILE 251 217 217 ILE ILE A . n B 2 252 ASP 252 218 218 ASP ASP A . n B 2 253 LEU 253 219 219 LEU LEU A . n B 2 254 ARG 254 220 220 ARG ARG A . n B 2 255 ASN 255 221 221 ASN ASN A . n B 2 256 PRO 256 222 222 PRO PRO A . n B 2 257 LYS 257 223 223 LYS LYS A . n B 2 258 GLY 258 224 224 GLY GLY A . n B 2 259 ASN 259 225 225 ASN ASN A . n B 2 260 LYS 260 226 226 LYS LYS A . n B 2 261 LYS 261 227 227 LYS LYS A . n B 2 262 ASN 262 228 228 ASN ASN A . n B 2 263 ALA 263 229 229 ALA ALA A . n B 2 264 GLY 264 230 230 GLY GLY A . n B 2 265 PHE 265 231 231 PHE PHE A . n B 2 266 THR 266 232 232 THR THR A . n B 2 267 PRO 267 233 233 PRO PRO A . n B 2 268 GLN 268 234 234 GLN GLN A . n B 2 269 GLU 269 235 235 GLU GLU A . n B 2 270 ARG 270 236 236 ARG ARG A . n B 2 271 GLN 271 237 237 GLN GLN A . n B 2 272 GLY 272 238 238 GLY GLY A . n B 2 273 PHE 273 239 239 PHE PHE A . n B 2 274 GLY 274 240 240 GLY GLY A . n B 2 275 GLU 275 241 241 GLU GLU A . n B 2 276 LEU 276 242 242 LEU LEU A . n B 2 277 LEU 277 243 243 LEU LEU A . n B 2 278 GLN 278 244 244 GLN GLN A . n B 2 279 ALA 279 245 245 ALA ALA A . n B 2 280 VAL 280 246 246 VAL VAL A . n B 2 281 PRO 281 247 247 PRO PRO A . n B 2 282 LEU 282 248 248 LEU LEU A . n B 2 283 ALA 283 249 249 ALA ALA A . n B 2 284 ASP 284 250 250 ASP ASP A . n B 2 285 SER 285 251 251 SER SER A . n B 2 286 PHE 286 252 252 PHE PHE A . n B 2 287 ARG 287 253 253 ARG ARG A . n B 2 288 HIS 288 254 254 HIS HIS A . n B 2 289 LEU 289 255 255 LEU LEU A . n B 2 290 TYR 290 256 256 TYR TYR A . n B 2 291 PRO 291 257 257 PRO PRO A . n B 2 292 ASN 292 258 258 ASN ASN A . n B 2 293 THR 293 259 259 THR THR A . n B 2 294 ALA 294 260 260 ALA ALA A . n B 2 295 TYR 295 261 261 TYR TYR A . n B 2 296 ALA 296 262 262 ALA ALA A . n B 2 297 TYR 297 263 263 TYR TYR A . n B 2 298 THR 298 264 264 THR THR A . n B 2 299 PHE 299 265 265 PHE PHE A . n B 2 300 TRP 300 266 266 TRP TRP A . n B 2 301 THR 301 267 267 THR THR A . n B 2 302 TYR 302 268 268 TYR TYR A . n B 2 303 MET 303 269 269 MET MET A . n B 2 304 MET 304 270 270 MET MET A . n B 2 305 ASN 305 271 271 ASN ASN A . n B 2 306 ALA 306 272 272 ALA ALA A . n B 2 307 ARG 307 273 273 ARG ARG A . n B 2 308 SER 308 274 274 SER SER A . n B 2 309 LYS 309 275 275 LYS LYS A . n B 2 310 ASN 310 276 276 ASN ASN A . n B 2 311 VAL 311 277 277 VAL VAL A . n B 2 312 GLY 312 278 278 GLY GLY A . n B 2 313 TRP 313 279 279 TRP TRP A . n B 2 314 ARG 314 280 280 ARG ARG A . n B 2 315 LEU 315 281 281 LEU LEU A . n B 2 316 ASP 316 282 282 ASP ASP A . n B 2 317 TYR 317 283 283 TYR TYR A . n B 2 318 PHE 318 284 284 PHE PHE A . n B 2 319 LEU 319 285 285 LEU LEU A . n B 2 320 LEU 320 286 286 LEU LEU A . n B 2 321 SER 321 287 287 SER SER A . n B 2 322 HIS 322 288 288 HIS HIS A . n B 2 323 SER 323 289 289 SER SER A . n B 2 324 LEU 324 290 290 LEU LEU A . n B 2 325 LEU 325 291 291 LEU LEU A . n B 2 326 PRO 326 292 292 PRO PRO A . n B 2 327 ALA 327 293 293 ALA ALA A . n B 2 328 LEU 328 294 294 LEU LEU A . n B 2 329 CYS 329 295 295 CYS CYS A . n B 2 330 ASP 330 296 296 ASP ASP A . n B 2 331 SER 331 297 297 SER SER A . n B 2 332 LYS 332 298 298 LYS LYS A . n B 2 333 ILE 333 299 299 ILE ILE A . n B 2 334 ARG 334 300 300 ARG ARG A . n B 2 335 SER 335 301 301 SER SER A . n B 2 336 LYS 336 302 302 LYS LYS A . n B 2 337 ALA 337 303 303 ALA ALA A . n B 2 338 LEU 338 304 304 LEU LEU A . n B 2 339 GLY 339 305 305 GLY GLY A . n B 2 340 SER 340 306 306 SER SER A . n B 2 341 ASP 341 307 307 ASP ASP A . n B 2 342 HIS 342 308 308 HIS HIS A . n B 2 343 CYS 343 309 309 CYS CYS A . n B 2 344 PRO 344 310 310 PRO PRO A . n B 2 345 ILE 345 311 311 ILE ILE A . n B 2 346 THR 346 312 312 THR THR A . n B 2 347 LEU 347 313 313 LEU LEU A . n B 2 348 TYR 348 314 314 TYR TYR A . n B 2 349 LEU 349 315 315 LEU LEU A . n B 2 350 ALA 350 316 316 ALA ALA A . n B 2 351 LEU 351 317 317 LEU LEU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-01-13 2 'Structure model' 1 1 2021-02-10 3 'Structure model' 1 2 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_database_2.pdbx_DOI' 13 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 49.5976 _pdbx_refine_tls.origin_y -21.7264 _pdbx_refine_tls.origin_z -0.3890 _pdbx_refine_tls.T[1][1] 0.3351 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0362 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0274 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.3787 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0636 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.3668 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.4532 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.0899 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.0505 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.9249 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.4690 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.8514 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0991 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.0492 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.0166 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0228 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.1933 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0175 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.1484 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.1386 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0000 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? B 1 ? ? ? B 8 ? ? all 2 'X-RAY DIFFRACTION' 1 ? ? A 40 ? ? ? A 317 ? ? all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.16_3549 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? BALBES ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 A GLU 149 ? ? NH1 A ARG 186 ? ? 2.04 2 1 OG A SER 99 ? ? OE2 A GLU 125 ? ? 2.10 3 1 NZ A LYS 102 ? ? OE1 A GLU 125 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 128 ? ? 51.05 -146.71 2 1 PHE A 231 ? ? -150.74 20.45 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B DG 9 ? A DG 9 2 1 Y 1 A MET -33 ? B MET 1 3 1 Y 1 A GLY -32 ? B GLY 2 4 1 Y 1 A SER -31 ? B SER 3 5 1 Y 1 A SER -30 ? B SER 4 6 1 Y 1 A HIS -29 ? B HIS 5 7 1 Y 1 A HIS -28 ? B HIS 6 8 1 Y 1 A HIS -27 ? B HIS 7 9 1 Y 1 A HIS -26 ? B HIS 8 10 1 Y 1 A HIS -25 ? B HIS 9 11 1 Y 1 A HIS -24 ? B HIS 10 12 1 Y 1 A SER -23 ? B SER 11 13 1 Y 1 A SER -22 ? B SER 12 14 1 Y 1 A GLY -21 ? B GLY 13 15 1 Y 1 A LEU -20 ? B LEU 14 16 1 Y 1 A VAL -19 ? B VAL 15 17 1 Y 1 A PRO -18 ? B PRO 16 18 1 Y 1 A ARG -17 ? B ARG 17 19 1 Y 1 A GLY -16 ? B GLY 18 20 1 Y 1 A SER -15 ? B SER 19 21 1 Y 1 A HIS -14 ? B HIS 20 22 1 Y 1 A MET -13 ? B MET 21 23 1 Y 1 A ALA -12 ? B ALA 22 24 1 Y 1 A SER -11 ? B SER 23 25 1 Y 1 A MET -10 ? B MET 24 26 1 Y 1 A THR -9 ? B THR 25 27 1 Y 1 A GLY -8 ? B GLY 26 28 1 Y 1 A GLY -7 ? B GLY 27 29 1 Y 1 A GLN -6 ? B GLN 28 30 1 Y 1 A GLN -5 ? B GLN 29 31 1 Y 1 A MET -4 ? B MET 30 32 1 Y 1 A GLY -3 ? B GLY 31 33 1 Y 1 A ARG -2 ? B ARG 32 34 1 Y 1 A GLY -1 ? B GLY 33 35 1 Y 1 A SER 0 ? B SER 34 36 1 Y 1 A MET 1 ? B MET 35 37 1 Y 1 A PRO 2 ? B PRO 36 38 1 Y 1 A LYS 3 ? B LYS 37 39 1 Y 1 A ARG 4 ? B ARG 38 40 1 Y 1 A GLY 5 ? B GLY 39 41 1 Y 1 A LYS 6 ? B LYS 40 42 1 Y 1 A LYS 7 ? B LYS 41 43 1 Y 1 A ALA 8 ? B ALA 42 44 1 Y 1 A ALA 9 ? B ALA 43 45 1 Y 1 A ALA 10 ? B ALA 44 46 1 Y 1 A ASP 11 ? B ASP 45 47 1 Y 1 A ASP 12 ? B ASP 46 48 1 Y 1 A GLY 13 ? B GLY 47 49 1 Y 1 A GLU 14 ? B GLU 48 50 1 Y 1 A GLU 15 ? B GLU 49 51 1 Y 1 A PRO 16 ? B PRO 50 52 1 Y 1 A LYS 17 ? B LYS 51 53 1 Y 1 A SER 18 ? B SER 52 54 1 Y 1 A GLU 19 ? B GLU 53 55 1 Y 1 A PRO 20 ? B PRO 54 56 1 Y 1 A GLU 21 ? B GLU 55 57 1 Y 1 A THR 22 ? B THR 56 58 1 Y 1 A LYS 23 ? B LYS 57 59 1 Y 1 A LYS 24 ? B LYS 58 60 1 Y 1 A SER 25 ? B SER 59 61 1 Y 1 A LYS 26 ? B LYS 60 62 1 Y 1 A GLY 27 ? B GLY 61 63 1 Y 1 A ALA 28 ? B ALA 62 64 1 Y 1 A ALA 29 ? B ALA 63 65 1 Y 1 A LYS 30 ? B LYS 64 66 1 Y 1 A LYS 31 ? B LYS 65 67 1 Y 1 A THR 32 ? B THR 66 68 1 Y 1 A GLU 33 ? B GLU 67 69 1 Y 1 A LYS 34 ? B LYS 68 70 1 Y 1 A GLU 35 ? B GLU 69 71 1 Y 1 A ALA 36 ? B ALA 70 72 1 Y 1 A ALA 37 ? B ALA 71 73 1 Y 1 A GLY 38 ? B GLY 72 74 1 Y 1 A GLU 39 ? B GLU 73 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TRP N N N N 461 TRP CA C N S 462 TRP C C N N 463 TRP O O N N 464 TRP CB C N N 465 TRP CG C Y N 466 TRP CD1 C Y N 467 TRP CD2 C Y N 468 TRP NE1 N Y N 469 TRP CE2 C Y N 470 TRP CE3 C Y N 471 TRP CZ2 C Y N 472 TRP CZ3 C Y N 473 TRP CH2 C Y N 474 TRP OXT O N N 475 TRP H H N N 476 TRP H2 H N N 477 TRP HA H N N 478 TRP HB2 H N N 479 TRP HB3 H N N 480 TRP HD1 H N N 481 TRP HE1 H N N 482 TRP HE3 H N N 483 TRP HZ2 H N N 484 TRP HZ3 H N N 485 TRP HH2 H N N 486 TRP HXT H N N 487 TYR N N N N 488 TYR CA C N S 489 TYR C C N N 490 TYR O O N N 491 TYR CB C N N 492 TYR CG C Y N 493 TYR CD1 C Y N 494 TYR CD2 C Y N 495 TYR CE1 C Y N 496 TYR CE2 C Y N 497 TYR CZ C Y N 498 TYR OH O N N 499 TYR OXT O N N 500 TYR H H N N 501 TYR H2 H N N 502 TYR HA H N N 503 TYR HB2 H N N 504 TYR HB3 H N N 505 TYR HD1 H N N 506 TYR HD2 H N N 507 TYR HE1 H N N 508 TYR HE2 H N N 509 TYR HH H N N 510 TYR HXT H N N 511 VAL N N N N 512 VAL CA C N S 513 VAL C C N N 514 VAL O O N N 515 VAL CB C N N 516 VAL CG1 C N N 517 VAL CG2 C N N 518 VAL OXT O N N 519 VAL H H N N 520 VAL H2 H N N 521 VAL HA H N N 522 VAL HB H N N 523 VAL HG11 H N N 524 VAL HG12 H N N 525 VAL HG13 H N N 526 VAL HG21 H N N 527 VAL HG22 H N N 528 VAL HG23 H N N 529 VAL HXT H N N 530 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TRP N CA sing N N 453 TRP N H sing N N 454 TRP N H2 sing N N 455 TRP CA C sing N N 456 TRP CA CB sing N N 457 TRP CA HA sing N N 458 TRP C O doub N N 459 TRP C OXT sing N N 460 TRP CB CG sing N N 461 TRP CB HB2 sing N N 462 TRP CB HB3 sing N N 463 TRP CG CD1 doub Y N 464 TRP CG CD2 sing Y N 465 TRP CD1 NE1 sing Y N 466 TRP CD1 HD1 sing N N 467 TRP CD2 CE2 doub Y N 468 TRP CD2 CE3 sing Y N 469 TRP NE1 CE2 sing Y N 470 TRP NE1 HE1 sing N N 471 TRP CE2 CZ2 sing Y N 472 TRP CE3 CZ3 doub Y N 473 TRP CE3 HE3 sing N N 474 TRP CZ2 CH2 doub Y N 475 TRP CZ2 HZ2 sing N N 476 TRP CZ3 CH2 sing Y N 477 TRP CZ3 HZ3 sing N N 478 TRP CH2 HH2 sing N N 479 TRP OXT HXT sing N N 480 TYR N CA sing N N 481 TYR N H sing N N 482 TYR N H2 sing N N 483 TYR CA C sing N N 484 TYR CA CB sing N N 485 TYR CA HA sing N N 486 TYR C O doub N N 487 TYR C OXT sing N N 488 TYR CB CG sing N N 489 TYR CB HB2 sing N N 490 TYR CB HB3 sing N N 491 TYR CG CD1 doub Y N 492 TYR CG CD2 sing Y N 493 TYR CD1 CE1 sing Y N 494 TYR CD1 HD1 sing N N 495 TYR CD2 CE2 doub Y N 496 TYR CD2 HD2 sing N N 497 TYR CE1 CZ doub Y N 498 TYR CE1 HE1 sing N N 499 TYR CE2 CZ sing Y N 500 TYR CE2 HE2 sing N N 501 TYR CZ OH sing N N 502 TYR OH HH sing N N 503 TYR OXT HXT sing N N 504 VAL N CA sing N N 505 VAL N H sing N N 506 VAL N H2 sing N N 507 VAL CA C sing N N 508 VAL CA CB sing N N 509 VAL CA HA sing N N 510 VAL C O doub N N 511 VAL C OXT sing N N 512 VAL CB CG1 sing N N 513 VAL CB CG2 sing N N 514 VAL CB HB sing N N 515 VAL CG1 HG11 sing N N 516 VAL CG1 HG12 sing N N 517 VAL CG1 HG13 sing N N 518 VAL CG2 HG21 sing N N 519 VAL CG2 HG22 sing N N 520 VAL CG2 HG23 sing N N 521 VAL OXT HXT sing N N 522 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7CD5 'double helix' 7CD5 'b-form double helix' 7CD5 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DC 8 8_555 -0.390 0.024 0.101 -6.491 3.639 4.886 1 B_DG2:DC8_B B 2 ? B 8 ? 19 1 1 A DT 3 1_555 A DA 7 8_555 -0.135 -0.061 0.279 -2.079 -1.789 -5.222 2 B_DT3:DA7_B B 3 ? B 7 ? 20 1 1 A DA 4 1_555 A DT 6 8_555 -0.012 -0.199 0.029 7.549 -16.237 0.426 3 B_DA4:DT6_B B 4 ? B 6 ? 20 1 1 A DT 6 1_555 A DA 4 8_555 0.012 -0.199 0.029 -7.549 -16.237 0.426 4 B_DT6:DA4_B B 6 ? B 4 ? 20 1 1 A DA 7 1_555 A DT 3 8_555 0.135 -0.061 0.279 2.079 -1.789 -5.222 5 B_DA7:DT3_B B 7 ? B 3 ? 20 1 1 A DC 8 1_555 A DG 2 8_555 0.390 0.024 0.101 6.491 3.639 4.886 6 B_DC8:DG2_B B 8 ? B 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DC 8 8_555 A DT 3 1_555 A DA 7 8_555 -0.966 -0.484 3.307 -1.519 2.007 26.847 -1.558 1.678 3.311 4.311 3.263 26.963 1 BB_DG2DT3:DA7DC8_BB B 2 ? B 8 ? B 3 ? B 7 ? 1 A DT 3 1_555 A DA 7 8_555 A DA 4 1_555 A DT 6 8_555 0.039 -0.010 3.093 1.798 8.377 32.128 -1.345 0.216 2.993 14.810 -3.178 33.222 2 BB_DT3DA4:DT6DA7_BB B 3 ? B 7 ? B 4 ? B 6 ? 1 A DA 4 1_555 A DT 6 8_555 A DT 6 1_555 A DA 4 8_555 0.000 -1.482 7.056 0.000 9.026 65.791 -2.123 0.000 6.826 8.269 0.000 66.339 3 BB_DA4DT6:DA4DT6_BB B 4 ? B 6 ? B 6 ? B 4 ? 1 A DT 6 1_555 A DA 4 8_555 A DA 7 1_555 A DT 3 8_555 -0.039 -0.010 3.093 -1.798 8.377 32.128 -1.345 -0.216 2.993 14.810 3.178 33.222 4 BB_DT6DA7:DT3DA4_BB B 6 ? B 4 ? B 7 ? B 3 ? 1 A DA 7 1_555 A DT 3 8_555 A DC 8 1_555 A DG 2 8_555 0.966 -0.484 3.307 1.519 2.007 26.847 -1.558 -1.678 3.311 4.311 -3.263 26.963 5 BB_DA7DC8:DG2DT3_BB B 7 ? B 3 ? B 8 ? B 2 ? # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology (MoST, Taiwan)' _pdbx_audit_support.country Taiwan _pdbx_audit_support.grant_number 'MOST 109-2636-B-009-004' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1HD7 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details monomer #