HEADER VIRAL PROTEIN 21-JUN-20 7CDZ TITLE CRYSTAL STRUCTURE OF 2019-NCOV NUCLEOCAPSID N-TERMINAL DOMAIN (NTD) TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: NTD; COMPND 5 SYNONYM: NUCLEOCAPSID PROTEIN,PROTEIN N,N,NC; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS COVID-19, RNA BINDING, NUCLEOCAPSID, 2019-NCOV, NTD, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.PENG,H.SONG,J.QI,G.F.GAO REVDAT 4 29-NOV-23 7CDZ 1 REMARK REVDAT 3 10-MAR-21 7CDZ 1 COMPND REVDAT 2 02-DEC-20 7CDZ 1 JRNL REVDAT 1 02-SEP-20 7CDZ 0 JRNL AUTH Y.PENG,N.DU,Y.LEI,S.DORJE,J.QI,T.LUO,G.F.GAO,H.SONG JRNL TITL STRUCTURES OF THE SARS-COV-2 NUCLEOCAPSID AND THEIR JRNL TITL 2 PERSPECTIVES FOR DRUG DESIGN. JRNL REF EMBO J. V. 39 05938 2020 JRNL REFN ESSN 1460-2075 JRNL PMID 32914439 JRNL DOI 10.15252/EMBJ.2020105938 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 46709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5000 - 4.5400 0.99 3139 154 0.1699 0.1835 REMARK 3 2 4.5400 - 3.6000 0.99 3079 151 0.1630 0.1895 REMARK 3 3 3.6000 - 3.1500 0.99 3041 148 0.1866 0.2083 REMARK 3 4 3.1500 - 2.8600 0.99 3023 147 0.1963 0.2376 REMARK 3 5 2.8600 - 2.6600 0.98 2994 168 0.2055 0.2409 REMARK 3 6 2.6600 - 2.5000 0.99 2993 170 0.2140 0.2527 REMARK 3 7 2.5000 - 2.3700 0.99 2986 152 0.2214 0.2599 REMARK 3 8 2.3700 - 2.2700 0.99 3032 155 0.2177 0.2624 REMARK 3 9 2.2700 - 2.1800 0.98 2953 172 0.2111 0.2425 REMARK 3 10 2.1800 - 2.1100 0.98 3028 133 0.2118 0.2437 REMARK 3 11 2.1100 - 2.0400 0.97 2915 161 0.2182 0.2386 REMARK 3 12 2.0400 - 1.9800 0.92 2785 156 0.2173 0.2517 REMARK 3 13 1.9800 - 1.9300 0.84 2554 134 0.2267 0.2425 REMARK 3 14 1.9300 - 1.8800 0.73 2221 105 0.2325 0.2892 REMARK 3 15 1.8800 - 1.8400 0.65 1995 79 0.2519 0.2763 REMARK 3 16 1.8400 - 1.8000 0.56 1706 80 0.2643 0.3184 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.175 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.661 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4068 REMARK 3 ANGLE : 0.808 5534 REMARK 3 CHIRALITY : 0.052 564 REMARK 3 PLANARITY : 0.006 738 REMARK 3 DIHEDRAL : 23.414 1492 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 30 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4253 12.3772 32.1927 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.0871 REMARK 3 T33: 0.1207 T12: -0.0202 REMARK 3 T13: -0.0112 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.0398 L22: 0.0776 REMARK 3 L33: 0.0453 L12: -0.0158 REMARK 3 L13: 0.0091 L23: -0.0256 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: -0.0594 S13: -0.0895 REMARK 3 S21: 0.0199 S22: 0.0265 S23: 0.0890 REMARK 3 S31: 0.0762 S32: -0.0554 S33: 0.0117 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0651 13.7609 36.2196 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.1114 REMARK 3 T33: -0.4399 T12: -0.0463 REMARK 3 T13: 0.0783 T23: 0.1182 REMARK 3 L TENSOR REMARK 3 L11: 0.1273 L22: 0.1485 REMARK 3 L33: 0.0979 L12: 0.0135 REMARK 3 L13: -0.0384 L23: -0.0297 REMARK 3 S TENSOR REMARK 3 S11: 0.1583 S12: -0.2050 S13: -0.0821 REMARK 3 S21: 0.4176 S22: -0.0217 S23: 0.3711 REMARK 3 S31: 0.0748 S32: -0.0529 S33: 0.0926 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7712 18.4812 35.8336 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.1177 REMARK 3 T33: 0.0512 T12: -0.0176 REMARK 3 T13: -0.0262 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.1014 L22: 0.0246 REMARK 3 L33: 0.0102 L12: 0.0532 REMARK 3 L13: -0.0230 L23: -0.0170 REMARK 3 S TENSOR REMARK 3 S11: 0.0933 S12: -0.1311 S13: 0.1019 REMARK 3 S21: 0.1919 S22: -0.1060 S23: -0.1239 REMARK 3 S31: 0.1140 S32: 0.0798 S33: -0.0011 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1777 3.5774 27.9418 REMARK 3 T TENSOR REMARK 3 T11: 0.4345 T22: 0.2276 REMARK 3 T33: 0.2567 T12: -0.0134 REMARK 3 T13: -0.1043 T23: -0.0984 REMARK 3 L TENSOR REMARK 3 L11: 0.0012 L22: 0.0023 REMARK 3 L33: 0.0021 L12: -0.0020 REMARK 3 L13: -0.0016 L23: 0.0028 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.0197 S13: -0.0078 REMARK 3 S21: -0.0457 S22: 0.0207 S23: -0.0329 REMARK 3 S31: -0.0069 S32: 0.0266 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2599 13.5164 11.5124 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.0824 REMARK 3 T33: 0.1281 T12: 0.0202 REMARK 3 T13: -0.0227 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.0131 L22: 0.0218 REMARK 3 L33: 0.0349 L12: 0.0039 REMARK 3 L13: 0.0221 L23: 0.0131 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0212 S13: -0.0085 REMARK 3 S21: 0.0315 S22: -0.0201 S23: -0.0072 REMARK 3 S31: 0.0447 S32: 0.0816 S33: -0.0046 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8622 4.6745 5.3638 REMARK 3 T TENSOR REMARK 3 T11: 0.1830 T22: 0.1268 REMARK 3 T33: 0.1331 T12: -0.0250 REMARK 3 T13: -0.0063 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 0.0037 L22: 0.0197 REMARK 3 L33: 0.0025 L12: 0.0064 REMARK 3 L13: -0.0017 L23: -0.0074 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.0178 S13: -0.0787 REMARK 3 S21: -0.0489 S22: 0.0170 S23: -0.0263 REMARK 3 S31: 0.0782 S32: -0.0651 S33: 0.0037 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1119 15.4386 4.8526 REMARK 3 T TENSOR REMARK 3 T11: 0.0774 T22: 0.1454 REMARK 3 T33: 0.1172 T12: 0.0283 REMARK 3 T13: -0.0024 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.0251 L22: 0.0217 REMARK 3 L33: 0.0127 L12: 0.0051 REMARK 3 L13: -0.0006 L23: 0.0074 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.0388 S13: 0.0323 REMARK 3 S21: 0.0161 S22: -0.0009 S23: 0.0763 REMARK 3 S31: -0.0189 S32: -0.0883 S33: 0.0018 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1189 11.7759 19.5082 REMARK 3 T TENSOR REMARK 3 T11: 0.1310 T22: 0.2640 REMARK 3 T33: 0.1367 T12: 0.0286 REMARK 3 T13: -0.0500 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 0.0390 L22: 0.0075 REMARK 3 L33: 0.0095 L12: -0.0166 REMARK 3 L13: 0.0121 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: -0.0036 S13: -0.0240 REMARK 3 S21: 0.0093 S22: 0.0051 S23: -0.0594 REMARK 3 S31: 0.0177 S32: 0.0500 S33: -0.0061 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7979 12.5450 11.8169 REMARK 3 T TENSOR REMARK 3 T11: 0.0805 T22: 0.0868 REMARK 3 T33: 0.0976 T12: 0.0254 REMARK 3 T13: -0.0130 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.0102 L22: 0.0195 REMARK 3 L33: 0.0206 L12: -0.0015 REMARK 3 L13: 0.0005 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.0438 S12: 0.0431 S13: -0.0135 REMARK 3 S21: -0.0082 S22: 0.0323 S23: -0.0480 REMARK 3 S31: 0.0203 S32: 0.0496 S33: 0.0536 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5117 12.3101 -1.8196 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.1212 REMARK 3 T33: 0.0939 T12: 0.0219 REMARK 3 T13: 0.0038 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.0418 L22: 0.0181 REMARK 3 L33: 0.0717 L12: 0.0175 REMARK 3 L13: -0.0034 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: 0.1021 S12: 0.1071 S13: -0.0735 REMARK 3 S21: 0.0206 S22: 0.0256 S23: -0.0274 REMARK 3 S31: 0.0528 S32: -0.0228 S33: 0.0586 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8025 15.3529 -3.4425 REMARK 3 T TENSOR REMARK 3 T11: 0.1592 T22: 0.2474 REMARK 3 T33: 0.1657 T12: 0.0133 REMARK 3 T13: -0.0687 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 0.0091 L22: 0.0015 REMARK 3 L33: 0.0070 L12: -0.0024 REMARK 3 L13: 0.0056 L23: -0.0020 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: 0.0501 S13: -0.0140 REMARK 3 S21: -0.0339 S22: -0.0666 S23: 0.0272 REMARK 3 S31: -0.0258 S32: -0.0293 S33: -0.0012 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6005 27.2980 8.5746 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.0979 REMARK 3 T33: 0.1626 T12: 0.0170 REMARK 3 T13: -0.0197 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.0450 L22: 0.0164 REMARK 3 L33: 0.0198 L12: 0.0234 REMARK 3 L13: 0.0003 L23: 0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.0861 S12: -0.0495 S13: 0.0756 REMARK 3 S21: -0.0306 S22: -0.0425 S23: -0.0008 REMARK 3 S31: -0.0793 S32: -0.0072 S33: 0.0082 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8414 12.8397 14.8836 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.0756 REMARK 3 T33: 0.0893 T12: -0.0396 REMARK 3 T13: 0.0470 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.0288 L22: 0.0086 REMARK 3 L33: 0.0092 L12: -0.0055 REMARK 3 L13: 0.0134 L23: -0.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: -0.0335 S13: 0.0402 REMARK 3 S21: 0.0285 S22: -0.0260 S23: -0.0188 REMARK 3 S31: -0.0033 S32: -0.0269 S33: -0.0126 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7416 1.9732 14.6832 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.1644 REMARK 3 T33: 0.1438 T12: -0.0274 REMARK 3 T13: -0.0591 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 0.0025 L22: 0.0023 REMARK 3 L33: 0.0011 L12: 0.0002 REMARK 3 L13: -0.0014 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.0078 S13: -0.0060 REMARK 3 S21: 0.0150 S22: 0.0549 S23: 0.0415 REMARK 3 S31: 0.0005 S32: -0.0411 S33: 0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 5 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8118 40.2806 23.6869 REMARK 3 T TENSOR REMARK 3 T11: 0.1440 T22: 0.1775 REMARK 3 T33: 0.3305 T12: 0.0229 REMARK 3 T13: 0.0229 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: -0.0036 L22: 0.0025 REMARK 3 L33: 0.0228 L12: 0.0007 REMARK 3 L13: 0.0002 L23: -0.0054 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: -0.0884 S13: 0.1714 REMARK 3 S21: 0.0160 S22: 0.0524 S23: 0.0587 REMARK 3 S31: -0.0953 S32: -0.0212 S33: -0.0007 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 21 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3859 38.0393 35.3168 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.3253 REMARK 3 T33: 0.2897 T12: 0.1161 REMARK 3 T13: -0.0279 T23: -0.2424 REMARK 3 L TENSOR REMARK 3 L11: 0.0023 L22: 0.0013 REMARK 3 L33: 0.0113 L12: -0.0016 REMARK 3 L13: -0.0058 L23: 0.0033 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: -0.0164 S13: 0.0540 REMARK 3 S21: 0.0147 S22: 0.0084 S23: -0.0227 REMARK 3 S31: -0.0205 S32: -0.0108 S33: -0.0021 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 31 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1390 29.9903 28.3526 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.1748 REMARK 3 T33: 0.1839 T12: 0.0671 REMARK 3 T13: 0.0233 T23: -0.0735 REMARK 3 L TENSOR REMARK 3 L11: 0.0219 L22: 0.0028 REMARK 3 L33: 0.0118 L12: -0.0029 REMARK 3 L13: 0.0072 L23: 0.0069 REMARK 3 S TENSOR REMARK 3 S11: -0.1199 S12: -0.0981 S13: 0.1938 REMARK 3 S21: 0.0391 S22: 0.0031 S23: 0.0447 REMARK 3 S31: 0.0153 S32: 0.0613 S33: -0.0228 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 48 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1334 52.9622 11.5835 REMARK 3 T TENSOR REMARK 3 T11: 0.4919 T22: 0.3369 REMARK 3 T33: 0.5800 T12: -0.0356 REMARK 3 T13: -0.1046 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 0.0017 L22: 0.0030 REMARK 3 L33: 0.0000 L12: 0.0003 REMARK 3 L13: -0.0010 L23: 0.0011 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: -0.0066 S13: -0.0230 REMARK 3 S21: 0.0219 S22: 0.0162 S23: -0.0219 REMARK 3 S31: -0.0039 S32: -0.0052 S33: 0.0000 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 63 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9597 36.6154 24.0752 REMARK 3 T TENSOR REMARK 3 T11: 0.0564 T22: 0.1213 REMARK 3 T33: 0.2938 T12: 0.0526 REMARK 3 T13: 0.0220 T23: -0.0929 REMARK 3 L TENSOR REMARK 3 L11: 0.0429 L22: 0.0480 REMARK 3 L33: 0.0419 L12: 0.0304 REMARK 3 L13: -0.0222 L23: 0.0029 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: -0.1161 S13: 0.3281 REMARK 3 S21: -0.0238 S22: 0.0720 S23: -0.0260 REMARK 3 S31: -0.0241 S32: 0.0177 S33: 0.0176 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 92 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4632 27.7165 26.4671 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.2031 REMARK 3 T33: 0.1433 T12: 0.0392 REMARK 3 T13: 0.0224 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 0.0387 L22: 0.1338 REMARK 3 L33: 0.0649 L12: 0.0489 REMARK 3 L13: -0.0264 L23: -0.0817 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: -0.0664 S13: 0.1232 REMARK 3 S21: 0.1013 S22: 0.2014 S23: 0.0520 REMARK 3 S31: 0.1154 S32: -0.0187 S33: 0.0697 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 122 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6095 44.2168 33.2296 REMARK 3 T TENSOR REMARK 3 T11: 0.6387 T22: 0.3990 REMARK 3 T33: 0.5330 T12: 0.0269 REMARK 3 T13: 0.0083 T23: -0.1864 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0027 REMARK 3 L33: 0.0012 L12: 0.0004 REMARK 3 L13: 0.0000 L23: -0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: -0.0025 S13: -0.0060 REMARK 3 S21: -0.0001 S22: 0.0095 S23: 0.0143 REMARK 3 S31: -0.0003 S32: -0.0233 S33: 0.0000 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 5 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8751 37.1778 14.1739 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.1221 REMARK 3 T33: 0.1499 T12: -0.0282 REMARK 3 T13: 0.0190 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 0.0161 L22: 0.0038 REMARK 3 L33: 0.0083 L12: 0.0095 REMARK 3 L13: -0.0106 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: 0.0608 S13: 0.1311 REMARK 3 S21: -0.1024 S22: 0.0863 S23: 0.0396 REMARK 3 S31: -0.1033 S32: 0.0117 S33: 0.0036 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 25 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9567 26.3225 7.7661 REMARK 3 T TENSOR REMARK 3 T11: 0.0944 T22: 0.1660 REMARK 3 T33: 0.1257 T12: -0.0296 REMARK 3 T13: -0.0112 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 0.0096 L22: 0.0045 REMARK 3 L33: 0.0086 L12: 0.0094 REMARK 3 L13: -0.0009 L23: -0.0065 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: 0.0453 S13: -0.0539 REMARK 3 S21: -0.0322 S22: 0.0836 S23: -0.0146 REMARK 3 S31: 0.0141 S32: 0.0264 S33: 0.0037 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 35 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0794 29.0376 13.4807 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.0789 REMARK 3 T33: 0.1187 T12: -0.0289 REMARK 3 T13: 0.0033 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.0128 L22: 0.0488 REMARK 3 L33: 0.0134 L12: 0.0064 REMARK 3 L13: -0.0057 L23: 0.0117 REMARK 3 S TENSOR REMARK 3 S11: 0.0550 S12: 0.0727 S13: 0.1162 REMARK 3 S21: -0.0023 S22: 0.0430 S23: -0.0035 REMARK 3 S31: -0.0069 S32: -0.0640 S33: 0.0343 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 48 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2290 51.9751 27.9031 REMARK 3 T TENSOR REMARK 3 T11: 0.4791 T22: 0.3301 REMARK 3 T33: 0.4246 T12: 0.0152 REMARK 3 T13: 0.0502 T23: -0.1356 REMARK 3 L TENSOR REMARK 3 L11: 0.0030 L22: 0.0025 REMARK 3 L33: 0.0009 L12: 0.0008 REMARK 3 L13: -0.0002 L23: 0.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: -0.0136 S13: -0.0286 REMARK 3 S21: 0.0245 S22: -0.0340 S23: -0.0104 REMARK 3 S31: -0.0335 S32: 0.0320 S33: 0.0000 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 58 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4403 49.6365 22.9168 REMARK 3 T TENSOR REMARK 3 T11: 0.2417 T22: 0.1515 REMARK 3 T33: 0.2494 T12: -0.0552 REMARK 3 T13: 0.0471 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.0002 L22: 0.0027 REMARK 3 L33: 0.0029 L12: 0.0014 REMARK 3 L13: 0.0021 L23: 0.0026 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: -0.0025 S13: 0.0037 REMARK 3 S21: 0.0181 S22: 0.0105 S23: -0.0018 REMARK 3 S31: -0.0232 S32: 0.0010 S33: 0.0000 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 64 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5733 33.7670 17.3669 REMARK 3 T TENSOR REMARK 3 T11: 0.0780 T22: 0.1059 REMARK 3 T33: 0.1473 T12: -0.0151 REMARK 3 T13: 0.0118 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.0149 L22: 0.0062 REMARK 3 L33: 0.0077 L12: -0.0067 REMARK 3 L13: 0.0048 L23: -0.0052 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: 0.0098 S13: 0.0628 REMARK 3 S21: -0.0087 S22: -0.0305 S23: 0.0020 REMARK 3 S31: -0.0379 S32: 0.0066 S33: -0.0127 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 70 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0813 28.8866 16.9247 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.0944 REMARK 3 T33: 0.1056 T12: -0.0195 REMARK 3 T13: 0.0075 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.0746 L22: 0.0252 REMARK 3 L33: 0.0593 L12: 0.0544 REMARK 3 L13: -0.0481 L23: -0.0483 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: 0.0175 S13: 0.1969 REMARK 3 S21: 0.0008 S22: -0.0131 S23: 0.1350 REMARK 3 S31: 0.0043 S32: -0.0683 S33: -0.0444 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 112 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3818 27.7903 9.4819 REMARK 3 T TENSOR REMARK 3 T11: 0.1205 T22: 0.1872 REMARK 3 T33: 0.1298 T12: -0.0004 REMARK 3 T13: -0.0066 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: -0.0004 L22: 0.0014 REMARK 3 L33: 0.0076 L12: -0.0003 REMARK 3 L13: 0.0021 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: 0.0778 S13: -0.0111 REMARK 3 S21: -0.0795 S22: 0.0471 S23: -0.0107 REMARK 3 S31: 0.0264 S32: 0.0064 S33: 0.0000 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 122 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8551 38.6319 6.5667 REMARK 3 T TENSOR REMARK 3 T11: 0.1681 T22: 0.2624 REMARK 3 T33: 0.1936 T12: -0.0860 REMARK 3 T13: 0.0131 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 0.0116 L22: 0.0074 REMARK 3 L33: 0.0185 L12: 0.0099 REMARK 3 L13: -0.0131 L23: -0.0098 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.0325 S13: 0.0232 REMARK 3 S21: -0.0177 S22: 0.0096 S23: -0.0229 REMARK 3 S31: -0.0169 S32: 0.0429 S33: 0.0062 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50503 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.7240 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2OFZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SPG, PH6.0, 25 % W/V PEG 1500, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 PRO A 3 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 1 REMARK 465 LEU B 2 REMARK 465 PRO B 3 REMARK 465 GLU B 131 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 GLY C 1 REMARK 465 LEU C 2 REMARK 465 PRO C 3 REMARK 465 ASN C 4 REMARK 465 GLU C 131 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 GLY D 1 REMARK 465 LEU D 2 REMARK 465 PRO D 3 REMARK 465 ASN D 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 318 O HOH B 354 1.81 REMARK 500 O HOH B 218 O HOH B 273 1.81 REMARK 500 O HOH D 213 O HOH D 321 1.85 REMARK 500 N TYR B 129 O HOH B 201 1.88 REMARK 500 O HOH A 330 O HOH A 372 1.89 REMARK 500 O HOH A 315 O HOH A 356 1.90 REMARK 500 O HOH D 341 O HOH D 360 1.96 REMARK 500 O THR B 6 O HOH B 202 1.98 REMARK 500 O HOH A 305 O HOH A 341 1.99 REMARK 500 O ALA A 130 O HOH A 201 1.99 REMARK 500 O HOH A 210 O HOH A 275 1.99 REMARK 500 O HOH A 252 O HOH A 324 2.00 REMARK 500 OD1 ASP D 55 O HOH D 201 2.05 REMARK 500 OD1 ASP A 39 NE2 HIS A 102 2.07 REMARK 500 O HOH B 210 O HOH B 317 2.08 REMARK 500 O HOH B 363 O HOH B 365 2.10 REMARK 500 O HOH B 260 O HOH B 354 2.11 REMARK 500 O HOH B 298 O HOH B 313 2.12 REMARK 500 NZ LYS B 22 O HOH B 203 2.12 REMARK 500 O HOH B 248 O HOH B 271 2.13 REMARK 500 O HOH A 214 O HOH A 328 2.14 REMARK 500 N THR A 6 O HOH A 202 2.15 REMARK 500 O HOH B 351 O HOH B 361 2.18 REMARK 500 O HOH B 323 O HOH D 310 2.18 REMARK 500 O THR C 6 O HOH C 201 2.18 REMARK 500 OE2 GLU D 19 O HOH D 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N PRO B 99 NH1 ARG C 50 2545 1.72 REMARK 500 NH2 ARG B 25 O HIS B 102 2545 1.75 REMARK 500 O HOH A 332 O HOH C 270 2546 2.07 REMARK 500 CA PRO B 99 NH1 ARG C 50 2545 2.15 REMARK 500 O HOH A 311 O HOH A 313 2646 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 25 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 100 57.61 -93.02 REMARK 500 LYS B 100 50.43 -93.97 REMARK 500 LYS C 100 58.62 -94.02 REMARK 500 LYS D 100 58.76 -94.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 99 LYS B 100 131.06 REMARK 500 REMARK 500 REMARK: NULL DBREF 7CDZ A 1 131 UNP P0DTC9 NCAP_SARS2 44 174 DBREF 7CDZ B 1 131 UNP P0DTC9 NCAP_SARS2 44 174 DBREF 7CDZ C 1 131 UNP P0DTC9 NCAP_SARS2 44 174 DBREF 7CDZ D 1 131 UNP P0DTC9 NCAP_SARS2 44 174 SEQADV 7CDZ HIS A -5 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS A -4 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS A -3 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS A -2 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS A -1 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS A 0 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS B -5 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS B -4 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS B -3 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS B -2 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS B -1 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS B 0 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS C -5 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS C -4 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS C -3 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS C -2 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS C -1 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS C 0 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS D -5 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS D -4 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS D -3 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS D -2 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS D -1 UNP P0DTC9 EXPRESSION TAG SEQADV 7CDZ HIS D 0 UNP P0DTC9 EXPRESSION TAG SEQRES 1 A 137 HIS HIS HIS HIS HIS HIS GLY LEU PRO ASN ASN THR ALA SEQRES 2 A 137 SER TRP PHE THR ALA LEU THR GLN HIS GLY LYS GLU ASP SEQRES 3 A 137 LEU LYS PHE PRO ARG GLY GLN GLY VAL PRO ILE ASN THR SEQRES 4 A 137 ASN SER SER PRO ASP ASP GLN ILE GLY TYR TYR ARG ARG SEQRES 5 A 137 ALA THR ARG ARG ILE ARG GLY GLY ASP GLY LYS MET LYS SEQRES 6 A 137 ASP LEU SER PRO ARG TRP TYR PHE TYR TYR LEU GLY THR SEQRES 7 A 137 GLY PRO GLU ALA GLY LEU PRO TYR GLY ALA ASN LYS ASP SEQRES 8 A 137 GLY ILE ILE TRP VAL ALA THR GLU GLY ALA LEU ASN THR SEQRES 9 A 137 PRO LYS ASP HIS ILE GLY THR ARG ASN PRO ALA ASN ASN SEQRES 10 A 137 ALA ALA ILE VAL LEU GLN LEU PRO GLN GLY THR THR LEU SEQRES 11 A 137 PRO LYS GLY PHE TYR ALA GLU SEQRES 1 B 137 HIS HIS HIS HIS HIS HIS GLY LEU PRO ASN ASN THR ALA SEQRES 2 B 137 SER TRP PHE THR ALA LEU THR GLN HIS GLY LYS GLU ASP SEQRES 3 B 137 LEU LYS PHE PRO ARG GLY GLN GLY VAL PRO ILE ASN THR SEQRES 4 B 137 ASN SER SER PRO ASP ASP GLN ILE GLY TYR TYR ARG ARG SEQRES 5 B 137 ALA THR ARG ARG ILE ARG GLY GLY ASP GLY LYS MET LYS SEQRES 6 B 137 ASP LEU SER PRO ARG TRP TYR PHE TYR TYR LEU GLY THR SEQRES 7 B 137 GLY PRO GLU ALA GLY LEU PRO TYR GLY ALA ASN LYS ASP SEQRES 8 B 137 GLY ILE ILE TRP VAL ALA THR GLU GLY ALA LEU ASN THR SEQRES 9 B 137 PRO LYS ASP HIS ILE GLY THR ARG ASN PRO ALA ASN ASN SEQRES 10 B 137 ALA ALA ILE VAL LEU GLN LEU PRO GLN GLY THR THR LEU SEQRES 11 B 137 PRO LYS GLY PHE TYR ALA GLU SEQRES 1 C 137 HIS HIS HIS HIS HIS HIS GLY LEU PRO ASN ASN THR ALA SEQRES 2 C 137 SER TRP PHE THR ALA LEU THR GLN HIS GLY LYS GLU ASP SEQRES 3 C 137 LEU LYS PHE PRO ARG GLY GLN GLY VAL PRO ILE ASN THR SEQRES 4 C 137 ASN SER SER PRO ASP ASP GLN ILE GLY TYR TYR ARG ARG SEQRES 5 C 137 ALA THR ARG ARG ILE ARG GLY GLY ASP GLY LYS MET LYS SEQRES 6 C 137 ASP LEU SER PRO ARG TRP TYR PHE TYR TYR LEU GLY THR SEQRES 7 C 137 GLY PRO GLU ALA GLY LEU PRO TYR GLY ALA ASN LYS ASP SEQRES 8 C 137 GLY ILE ILE TRP VAL ALA THR GLU GLY ALA LEU ASN THR SEQRES 9 C 137 PRO LYS ASP HIS ILE GLY THR ARG ASN PRO ALA ASN ASN SEQRES 10 C 137 ALA ALA ILE VAL LEU GLN LEU PRO GLN GLY THR THR LEU SEQRES 11 C 137 PRO LYS GLY PHE TYR ALA GLU SEQRES 1 D 137 HIS HIS HIS HIS HIS HIS GLY LEU PRO ASN ASN THR ALA SEQRES 2 D 137 SER TRP PHE THR ALA LEU THR GLN HIS GLY LYS GLU ASP SEQRES 3 D 137 LEU LYS PHE PRO ARG GLY GLN GLY VAL PRO ILE ASN THR SEQRES 4 D 137 ASN SER SER PRO ASP ASP GLN ILE GLY TYR TYR ARG ARG SEQRES 5 D 137 ALA THR ARG ARG ILE ARG GLY GLY ASP GLY LYS MET LYS SEQRES 6 D 137 ASP LEU SER PRO ARG TRP TYR PHE TYR TYR LEU GLY THR SEQRES 7 D 137 GLY PRO GLU ALA GLY LEU PRO TYR GLY ALA ASN LYS ASP SEQRES 8 D 137 GLY ILE ILE TRP VAL ALA THR GLU GLY ALA LEU ASN THR SEQRES 9 D 137 PRO LYS ASP HIS ILE GLY THR ARG ASN PRO ALA ASN ASN SEQRES 10 D 137 ALA ALA ILE VAL LEU GLN LEU PRO GLN GLY THR THR LEU SEQRES 11 D 137 PRO LYS GLY PHE TYR ALA GLU FORMUL 5 HOH *611(H2 O) HELIX 1 AA1 SER A 36 ASP A 39 5 4 HELIX 2 AA2 SER B 36 ASP B 39 5 4 HELIX 3 AA3 SER C 36 ASP C 39 5 4 HELIX 4 AA4 THR C 72 ALA C 76 5 5 HELIX 5 AA5 SER D 36 ASP D 39 5 4 SHEET 1 AA1 4 LEU A 13 THR A 14 0 SHEET 2 AA1 4 ARG A 64 TYR A 69 -1 O TRP A 65 N LEU A 13 SHEET 3 AA1 4 ILE A 41 ALA A 47 -1 N ALA A 47 O ARG A 64 SHEET 4 AA1 4 ILE A 87 ALA A 91 -1 O VAL A 90 N GLY A 42 SHEET 1 AA2 2 ARG A 50 ARG A 52 0 SHEET 2 AA2 2 MET A 58 ASP A 60 -1 O LYS A 59 N ILE A 51 SHEET 1 AA3 4 LEU B 13 THR B 14 0 SHEET 2 AA3 4 ARG B 64 TYR B 69 -1 O TRP B 65 N LEU B 13 SHEET 3 AA3 4 ILE B 41 ALA B 47 -1 N ALA B 47 O ARG B 64 SHEET 4 AA3 4 ILE B 87 ALA B 91 -1 O ILE B 88 N TYR B 44 SHEET 1 AA4 2 ARG B 50 ARG B 52 0 SHEET 2 AA4 2 MET B 58 ASP B 60 -1 O LYS B 59 N ILE B 51 SHEET 1 AA5 5 ILE C 87 ALA C 91 0 SHEET 2 AA5 5 ILE C 41 ALA C 47 -1 N TYR C 44 O ILE C 88 SHEET 3 AA5 5 ARG C 64 TYR C 69 -1 O ARG C 64 N ALA C 47 SHEET 4 AA5 5 LEU C 13 GLN C 15 -1 N LEU C 13 O TRP C 65 SHEET 5 AA5 5 PHE C 128 TYR C 129 -1 O TYR C 129 N THR C 14 SHEET 1 AA6 2 ARG C 50 ILE C 51 0 SHEET 2 AA6 2 LYS C 59 ASP C 60 -1 O LYS C 59 N ILE C 51 SHEET 1 AA7 4 LEU D 13 THR D 14 0 SHEET 2 AA7 4 ARG D 64 TYR D 69 -1 O TRP D 65 N LEU D 13 SHEET 3 AA7 4 ILE D 41 ALA D 47 -1 N ALA D 47 O ARG D 64 SHEET 4 AA7 4 ILE D 87 ALA D 91 -1 O VAL D 90 N GLY D 42 SHEET 1 AA8 2 ARG D 50 ARG D 52 0 SHEET 2 AA8 2 MET D 58 ASP D 60 -1 O LYS D 59 N ILE D 51 CRYST1 59.266 55.430 85.680 90.00 95.38 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016873 0.000000 0.001590 0.00000 SCALE2 0.000000 0.018041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011723 0.00000