HEADER VIRAL PROTEIN 21-JUN-20 7CE0 TITLE CRYSTAL STRUCTURE OF 2019-NCOV NUCLEOCAPSID C-TERMINAL DOMAIN (CTD) TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CTD; COMPND 5 SYNONYM: NUCLEOCAPSID PROTEIN,PROTEIN N,N,NC; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS COVID-19, RNA BINDING, NUCLEOCAPSID, 2019-NCOV, DIMERIZATION, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.PENG,J.QI,H.SONG,G.F.GAO REVDAT 4 29-NOV-23 7CE0 1 REMARK REVDAT 3 10-MAR-21 7CE0 1 COMPND REVDAT 2 02-DEC-20 7CE0 1 JRNL REVDAT 1 02-SEP-20 7CE0 0 JRNL AUTH Y.PENG,N.DU,Y.LEI,S.DORJE,J.QI,T.LUO,G.F.GAO,H.SONG JRNL TITL STRUCTURES OF THE SARS-COV-2 NUCLEOCAPSID AND THEIR JRNL TITL 2 PERSPECTIVES FOR DRUG DESIGN. JRNL REF EMBO J. V. 39 05938 2020 JRNL REFN ESSN 1460-2075 JRNL PMID 32914439 JRNL DOI 10.15252/EMBJ.2020105938 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 81130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 3952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8200 - 4.5500 0.98 3006 139 0.1507 0.1346 REMARK 3 2 4.5500 - 3.6100 0.94 2877 131 0.1386 0.1626 REMARK 3 3 3.6100 - 3.1600 0.94 2843 162 0.1671 0.1856 REMARK 3 4 3.1600 - 2.8700 0.99 3039 153 0.1720 0.2166 REMARK 3 5 2.8700 - 2.6600 0.98 2997 147 0.1850 0.1766 REMARK 3 6 2.6600 - 2.5100 0.97 2950 170 0.1827 0.1884 REMARK 3 7 2.5100 - 2.3800 0.98 3000 135 0.1866 0.2157 REMARK 3 8 2.3800 - 2.2800 0.97 2935 168 0.1789 0.1763 REMARK 3 9 2.2800 - 2.1900 0.95 2909 147 0.1754 0.1729 REMARK 3 10 2.1900 - 2.1100 0.97 2993 170 0.1754 0.1856 REMARK 3 11 2.1100 - 2.0500 0.97 2932 153 0.1730 0.1754 REMARK 3 12 2.0500 - 1.9900 0.98 2984 143 0.1805 0.1901 REMARK 3 13 1.9900 - 1.9400 0.96 2939 164 0.1881 0.2349 REMARK 3 14 1.9400 - 1.8900 0.96 2934 145 0.1937 0.2159 REMARK 3 15 1.8900 - 1.8500 0.96 2965 151 0.1902 0.2093 REMARK 3 16 1.8500 - 1.8100 0.96 2893 159 0.1934 0.2171 REMARK 3 17 1.8100 - 1.7700 0.96 2915 149 0.1999 0.1804 REMARK 3 18 1.7700 - 1.7400 0.95 2897 148 0.2136 0.2526 REMARK 3 19 1.7400 - 1.7100 0.94 2891 153 0.2171 0.2037 REMARK 3 20 1.7100 - 1.6800 0.92 2775 134 0.1996 0.2376 REMARK 3 21 1.6800 - 1.6500 0.87 2728 136 0.2004 0.2113 REMARK 3 22 1.6500 - 1.6300 0.85 2552 134 0.1972 0.1990 REMARK 3 23 1.6300 - 1.6000 0.80 2472 125 0.2057 0.2418 REMARK 3 24 1.6000 - 1.5800 0.78 2363 125 0.2004 0.2090 REMARK 3 25 1.5800 - 1.5600 0.74 2259 115 0.2054 0.2120 REMARK 3 26 1.5600 - 1.5400 0.69 2128 103 0.2058 0.2233 REMARK 3 27 1.5400 - 1.5200 0.68 2066 105 0.2085 0.2234 REMARK 3 28 1.5200 - 1.5000 0.63 1936 88 0.2139 0.2825 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.136 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.366 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3628 REMARK 3 ANGLE : 0.651 4902 REMARK 3 CHIRALITY : 0.076 502 REMARK 3 PLANARITY : 0.006 646 REMARK 3 DIHEDRAL : 26.630 1366 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 11.3220 28.0123 11.4631 REMARK 3 T TENSOR REMARK 3 T11: 0.0888 T22: 0.0557 REMARK 3 T33: 0.0832 T12: 0.0010 REMARK 3 T13: 0.0001 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.7148 L22: 0.2378 REMARK 3 L33: 0.4578 L12: -0.0199 REMARK 3 L13: 0.0048 L23: 0.0827 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.0437 S13: 0.0422 REMARK 3 S21: -0.0065 S22: 0.0030 S23: 0.0142 REMARK 3 S31: 0.0026 S32: 0.0084 S33: -0.0075 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -4.1133 51.2448 -4.8536 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.0716 REMARK 3 T33: 0.0904 T12: 0.0003 REMARK 3 T13: -0.0013 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.6908 L22: 0.2723 REMARK 3 L33: 0.4481 L12: 0.0660 REMARK 3 L13: -0.0736 L23: 0.0485 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: -0.0421 S13: -0.0345 REMARK 3 S21: 0.0109 S22: 0.0088 S23: 0.0353 REMARK 3 S31: -0.0135 S32: -0.0200 S33: -0.0015 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 7.0497 51.3361 -17.9200 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.0921 REMARK 3 T33: 0.0834 T12: -0.0075 REMARK 3 T13: 0.0017 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.4096 L22: 0.2729 REMARK 3 L33: 0.5802 L12: -0.0241 REMARK 3 L13: 0.0038 L23: -0.0244 REMARK 3 S TENSOR REMARK 3 S11: -0.0440 S12: 0.0805 S13: -0.0337 REMARK 3 S21: -0.0087 S22: 0.0162 S23: -0.0291 REMARK 3 S31: -0.0005 S32: 0.0505 S33: -0.0093 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 22.5177 27.6720 24.4856 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.0962 REMARK 3 T33: 0.0907 T12: 0.0048 REMARK 3 T13: -0.0013 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.4860 L22: 0.1920 REMARK 3 L33: 0.4890 L12: 0.0136 REMARK 3 L13: 0.0523 L23: 0.0306 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: -0.0945 S13: 0.0422 REMARK 3 S21: 0.0068 S22: 0.0243 S23: -0.0199 REMARK 3 S31: 0.0058 S32: 0.0368 S33: -0.0179 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CE0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103766 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2650 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2CJR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M POTASSIUM FORMATE, 0.1M BIS-TRIS REMARK 280 PROPANE, PH 9.0, 2% W/V POLYETHYLENE GLYCOL MONOMETHYL ETHER REMARK 280 2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN D 35 O HOH D 201 1.86 REMARK 500 O HOH B 358 O HOH B 365 1.86 REMARK 500 O HOH C 212 O HOH C 237 1.90 REMARK 500 O HOH B 322 O HOH B 334 1.96 REMARK 500 O HOH C 322 O HOH C 343 1.96 REMARK 500 O HOH A 292 O HOH D 217 1.96 REMARK 500 O HOH D 205 O HOH D 367 1.98 REMARK 500 O HOH A 360 O HOH A 362 2.00 REMARK 500 O HOH A 362 O HOH A 372 2.02 REMARK 500 O HOH B 318 O HOH B 371 2.03 REMARK 500 O HOH D 336 O HOH D 350 2.03 REMARK 500 O HOH A 251 O HOH B 215 2.03 REMARK 500 NZ LYS D 3 O HOH D 202 2.04 REMARK 500 O HOH D 322 O HOH D 373 2.05 REMARK 500 O HOH B 265 O HOH B 307 2.05 REMARK 500 O HOH B 246 O HOH B 331 2.07 REMARK 500 O HOH C 341 O HOH C 360 2.07 REMARK 500 O HOH B 349 O HOH B 383 2.07 REMARK 500 O HOH C 299 O HOH C 336 2.08 REMARK 500 O HOH A 367 O HOH A 379 2.08 REMARK 500 O HOH A 332 O HOH A 334 2.08 REMARK 500 O HOH A 324 O HOH A 387 2.08 REMARK 500 O HOH A 333 O HOH B 267 2.08 REMARK 500 O HOH C 253 O HOH C 357 2.10 REMARK 500 NZ LYS C 93 O HOH C 201 2.10 REMARK 500 O HOH B 243 O HOH B 260 2.14 REMARK 500 O HOH A 222 O HOH A 327 2.17 REMARK 500 O HOH B 267 O HOH B 315 2.18 REMARK 500 O HOH A 322 O HOH A 352 2.18 REMARK 500 O HOH B 222 O HOH B 325 2.18 REMARK 500 SD MET B 63 O HOH B 328 2.19 REMARK 500 O HOH B 264 O HOH C 212 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 348 O HOH B 248 1645 1.75 REMARK 500 O HOH C 266 O HOH D 212 1464 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 379 DISTANCE = 6.81 ANGSTROMS DBREF 7CE0 A 1 110 UNP P0DTC9 NCAP_SARS2 255 364 DBREF 7CE0 B 1 110 UNP P0DTC9 NCAP_SARS2 255 364 DBREF 7CE0 C 1 110 UNP P0DTC9 NCAP_SARS2 255 364 DBREF 7CE0 D 1 110 UNP P0DTC9 NCAP_SARS2 255 364 SEQADV 7CE0 HIS A -5 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS A -4 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS A -3 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS A -2 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS A -1 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS A 0 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS B -5 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS B -4 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS B -3 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS B -2 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS B -1 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS B 0 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS C -5 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS C -4 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS C -3 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS C -2 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS C -1 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS C 0 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS D -5 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS D -4 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS D -3 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS D -2 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS D -1 UNP P0DTC9 EXPRESSION TAG SEQADV 7CE0 HIS D 0 UNP P0DTC9 EXPRESSION TAG SEQRES 1 A 116 HIS HIS HIS HIS HIS HIS SER LYS LYS PRO ARG GLN LYS SEQRES 2 A 116 ARG THR ALA THR LYS ALA TYR ASN VAL THR GLN ALA PHE SEQRES 3 A 116 GLY ARG ARG GLY PRO GLU GLN THR GLN GLY ASN PHE GLY SEQRES 4 A 116 ASP GLN GLU LEU ILE ARG GLN GLY THR ASP TYR LYS HIS SEQRES 5 A 116 TRP PRO GLN ILE ALA GLN PHE ALA PRO SER ALA SER ALA SEQRES 6 A 116 PHE PHE GLY MET SER ARG ILE GLY MET GLU VAL THR PRO SEQRES 7 A 116 SER GLY THR TRP LEU THR TYR THR GLY ALA ILE LYS LEU SEQRES 8 A 116 ASP ASP LYS ASP PRO ASN PHE LYS ASP GLN VAL ILE LEU SEQRES 9 A 116 LEU ASN LYS HIS ILE ASP ALA TYR LYS THR PHE PRO SEQRES 1 B 116 HIS HIS HIS HIS HIS HIS SER LYS LYS PRO ARG GLN LYS SEQRES 2 B 116 ARG THR ALA THR LYS ALA TYR ASN VAL THR GLN ALA PHE SEQRES 3 B 116 GLY ARG ARG GLY PRO GLU GLN THR GLN GLY ASN PHE GLY SEQRES 4 B 116 ASP GLN GLU LEU ILE ARG GLN GLY THR ASP TYR LYS HIS SEQRES 5 B 116 TRP PRO GLN ILE ALA GLN PHE ALA PRO SER ALA SER ALA SEQRES 6 B 116 PHE PHE GLY MET SER ARG ILE GLY MET GLU VAL THR PRO SEQRES 7 B 116 SER GLY THR TRP LEU THR TYR THR GLY ALA ILE LYS LEU SEQRES 8 B 116 ASP ASP LYS ASP PRO ASN PHE LYS ASP GLN VAL ILE LEU SEQRES 9 B 116 LEU ASN LYS HIS ILE ASP ALA TYR LYS THR PHE PRO SEQRES 1 C 116 HIS HIS HIS HIS HIS HIS SER LYS LYS PRO ARG GLN LYS SEQRES 2 C 116 ARG THR ALA THR LYS ALA TYR ASN VAL THR GLN ALA PHE SEQRES 3 C 116 GLY ARG ARG GLY PRO GLU GLN THR GLN GLY ASN PHE GLY SEQRES 4 C 116 ASP GLN GLU LEU ILE ARG GLN GLY THR ASP TYR LYS HIS SEQRES 5 C 116 TRP PRO GLN ILE ALA GLN PHE ALA PRO SER ALA SER ALA SEQRES 6 C 116 PHE PHE GLY MET SER ARG ILE GLY MET GLU VAL THR PRO SEQRES 7 C 116 SER GLY THR TRP LEU THR TYR THR GLY ALA ILE LYS LEU SEQRES 8 C 116 ASP ASP LYS ASP PRO ASN PHE LYS ASP GLN VAL ILE LEU SEQRES 9 C 116 LEU ASN LYS HIS ILE ASP ALA TYR LYS THR PHE PRO SEQRES 1 D 116 HIS HIS HIS HIS HIS HIS SER LYS LYS PRO ARG GLN LYS SEQRES 2 D 116 ARG THR ALA THR LYS ALA TYR ASN VAL THR GLN ALA PHE SEQRES 3 D 116 GLY ARG ARG GLY PRO GLU GLN THR GLN GLY ASN PHE GLY SEQRES 4 D 116 ASP GLN GLU LEU ILE ARG GLN GLY THR ASP TYR LYS HIS SEQRES 5 D 116 TRP PRO GLN ILE ALA GLN PHE ALA PRO SER ALA SER ALA SEQRES 6 D 116 PHE PHE GLY MET SER ARG ILE GLY MET GLU VAL THR PRO SEQRES 7 D 116 SER GLY THR TRP LEU THR TYR THR GLY ALA ILE LYS LEU SEQRES 8 D 116 ASP ASP LYS ASP PRO ASN PHE LYS ASP GLN VAL ILE LEU SEQRES 9 D 116 LEU ASN LYS HIS ILE ASP ALA TYR LYS THR PHE PRO FORMUL 5 HOH *740(H2 O) HELIX 1 AA1 PRO A 4 ARG A 8 5 5 HELIX 2 AA2 ASN A 15 GLY A 21 1 7 HELIX 3 AA3 ASP A 34 GLY A 41 1 8 HELIX 4 AA4 THR A 42 TYR A 44 5 3 HELIX 5 AA5 HIS A 46 GLN A 52 1 7 HELIX 6 AA6 SER A 56 SER A 64 1 9 HELIX 7 AA7 ASN A 91 ILE A 103 1 13 HELIX 8 AA8 ASP A 104 PHE A 109 5 6 HELIX 9 AA9 PRO B 4 ARG B 8 5 5 HELIX 10 AB1 ASN B 15 GLY B 21 1 7 HELIX 11 AB2 ASP B 34 GLY B 41 1 8 HELIX 12 AB3 THR B 42 TYR B 44 5 3 HELIX 13 AB4 HIS B 46 GLN B 52 1 7 HELIX 14 AB5 SER B 56 SER B 64 1 9 HELIX 15 AB6 ASN B 91 ILE B 103 1 13 HELIX 16 AB7 ASP B 104 PHE B 109 5 6 HELIX 17 AB8 PRO C 4 ARG C 8 5 5 HELIX 18 AB9 ASN C 15 GLY C 21 1 7 HELIX 19 AC1 ASP C 34 GLY C 41 1 8 HELIX 20 AC2 THR C 42 TYR C 44 5 3 HELIX 21 AC3 HIS C 46 GLN C 52 1 7 HELIX 22 AC4 SER C 56 SER C 64 1 9 HELIX 23 AC5 ASN C 91 ILE C 103 1 13 HELIX 24 AC6 ASP C 104 PHE C 109 5 6 HELIX 25 AC7 PRO D 4 ARG D 8 5 5 HELIX 26 AC8 ASN D 15 GLY D 21 1 7 HELIX 27 AC9 ASP D 34 GLY D 41 1 8 HELIX 28 AD1 THR D 42 TYR D 44 5 3 HELIX 29 AD2 HIS D 46 GLN D 52 1 7 HELIX 30 AD3 SER D 56 SER D 64 1 9 HELIX 31 AD4 ASN D 91 ILE D 103 1 13 HELIX 32 AD5 ASP D 104 PHE D 109 5 6 SHEET 1 AA1 4 ARG A 65 THR A 71 0 SHEET 2 AA1 4 GLY A 74 LYS A 84 -1 O GLY A 74 N THR A 71 SHEET 3 AA1 4 GLY D 74 LYS D 84 -1 O ILE D 83 N LEU A 77 SHEET 4 AA1 4 ARG D 65 THR D 71 -1 N GLU D 69 O TRP D 76 SHEET 1 AA2 4 ARG B 65 THR B 71 0 SHEET 2 AA2 4 GLY B 74 LYS B 84 -1 O GLY B 74 N THR B 71 SHEET 3 AA2 4 GLY C 74 LYS C 84 -1 O LEU C 77 N ILE B 83 SHEET 4 AA2 4 ARG C 65 THR C 71 -1 N GLU C 69 O TRP C 76 CRYST1 43.726 50.310 69.134 73.88 89.94 82.55 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022870 -0.002990 0.000847 0.00000 SCALE2 0.000000 0.020046 -0.005845 0.00000 SCALE3 0.000000 0.000000 0.015067 0.00000