HEADER IMMUNOSUPPRESSANT 06-JUL-20 7CHZ TITLE CRYSTAL STRUCTURE OF HUMAN IL-1BETA IN COMPLEX WITH ANTIBODY BINDING TITLE 2 FRAGMENT OF IGG26A COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN OF ANTIBODY BINDING FRAGMENT OF IGG26A; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN OF ANTIBODY BINDING FRAGMENT OF IGG26A; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: INTERLEUKIN-1 BETA; COMPND 11 CHAIN: I; COMPND 12 SYNONYM: IL-1 BETA,CATABOLIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: IL1B, IL1F2; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, ANTIBODY, INTERLEUKIN-1BETA, IMMUNOSUPPRESSANT EXPDTA X-RAY DIFFRACTION AUTHOR C.C.LEE,A.H.J.WANG,W.C.KUO REVDAT 4 23-OCT-24 7CHZ 1 REMARK REVDAT 3 29-NOV-23 7CHZ 1 REMARK REVDAT 2 27-JAN-21 7CHZ 1 JRNL REVDAT 1 13-JAN-21 7CHZ 0 JRNL AUTH W.C.KUO,C.C.LEE,Y.W.CHANG,W.PANG,H.S.CHEN,S.C.HOU,S.Y.LO, JRNL AUTH 2 A.S.YANG,A.H.WANG JRNL TITL STRUCTURE-BASED DEVELOPMENT OF HUMAN INTERLEUKIN-1 JRNL TITL 2 BETA-SPECIFIC ANTIBODY THAT SIMULTANEOUSLY INHIBITS BINDING JRNL TITL 3 TO BOTH IL-1RI AND IL-1RACP. JRNL REF J.MOL.BIOL. V. 433 66766 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 33359099 JRNL DOI 10.1016/J.JMB.2020.166766 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 22991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.967 REMARK 3 FREE R VALUE TEST SET COUNT : 1142 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1573 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4465 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11100 REMARK 3 B22 (A**2) : 0.16400 REMARK 3 B33 (A**2) : -0.33200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.38400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.658 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4572 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4119 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6206 ; 1.580 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9626 ; 1.215 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 8.140 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;37.570 ;23.689 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 760 ;16.187 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.719 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 596 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5087 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 921 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 685 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 65 ; 0.220 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2051 ; 0.164 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 214 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2308 ; 2.223 ; 3.155 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2307 ; 2.221 ; 3.153 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2878 ; 3.958 ; 4.711 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2879 ; 3.957 ; 4.712 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2264 ; 1.643 ; 3.291 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2264 ; 1.641 ; 3.291 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3328 ; 3.006 ; 4.824 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3329 ; 3.006 ; 4.825 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 212 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2487 -15.6090 -0.6976 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1456 REMARK 3 T33: 0.4556 T12: -0.1481 REMARK 3 T13: -0.0271 T23: -0.0891 REMARK 3 L TENSOR REMARK 3 L11: 1.7886 L22: 1.8841 REMARK 3 L33: 0.0742 L12: 1.8254 REMARK 3 L13: 0.3058 L23: 0.3276 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: -0.0743 S13: 0.5273 REMARK 3 S21: 0.0547 S22: -0.1229 S23: 0.6013 REMARK 3 S31: 0.0660 S32: -0.0677 S33: 0.1012 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 220 REMARK 3 ORIGIN FOR THE GROUP (A): 65.2167 -9.6276 0.0890 REMARK 3 T TENSOR REMARK 3 T11: 0.1956 T22: 0.2579 REMARK 3 T33: 0.1471 T12: -0.0284 REMARK 3 T13: -0.0380 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.0561 L22: 0.8431 REMARK 3 L33: 0.8538 L12: -0.0140 REMARK 3 L13: -0.1344 L23: 0.6922 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.0922 S13: 0.0561 REMARK 3 S21: 0.0614 S22: 0.0851 S23: 0.0528 REMARK 3 S31: 0.0553 S32: -0.1548 S33: -0.0604 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 119 I 269 REMARK 3 ORIGIN FOR THE GROUP (A): 54.8566 28.9527 25.4039 REMARK 3 T TENSOR REMARK 3 T11: 0.3657 T22: 0.2123 REMARK 3 T33: 0.0726 T12: 0.1984 REMARK 3 T13: 0.0191 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 2.4367 L22: 4.2450 REMARK 3 L33: 0.2042 L12: -2.0599 REMARK 3 L13: 0.1629 L23: 0.5521 REMARK 3 S TENSOR REMARK 3 S11: -0.6430 S12: -0.2051 S13: 0.0340 REMARK 3 S21: 0.5331 S22: 0.6310 S23: 0.0631 REMARK 3 S31: -0.0367 S32: 0.1167 S33: 0.0120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7CHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23536 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2I1B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% (W/V) PEG 3350, 10% (V/V) REMARK 280 GLYCEROL, AND 0.1 M CITRIC ACID AT PH 4.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.84700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.34950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.84700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.34950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 LYS H 136 REMARK 465 SER H 137 REMARK 465 THR H 138 REMARK 465 SER H 139 REMARK 465 GLY H 140 REMARK 465 LYS H 221 REMARK 465 SER H 222 REMARK 465 CYS H 223 REMARK 465 ASP H 224 REMARK 465 LYS H 225 REMARK 465 THR H 226 REMARK 465 HIS H 227 REMARK 465 LEU I 114 REMARK 465 GLY I 115 REMARK 465 SER I 116 REMARK 465 ARG I 117 REMARK 465 ALA I 118 REMARK 465 SER I 270 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU H 155 O HOH H 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 480 O HOH H 480 2655 1.69 REMARK 500 O HOH H 447 O HOH H 447 2656 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 30 -137.57 45.05 REMARK 500 LEU L 47 -65.28 -105.70 REMARK 500 THR L 51 -43.38 76.79 REMARK 500 ALA L 52 -4.39 -148.28 REMARK 500 SER L 56 123.90 -32.55 REMARK 500 SER L 77 103.03 -172.94 REMARK 500 PHE L 83 97.58 -54.81 REMARK 500 ARG L 108 -169.00 -125.22 REMARK 500 ASN L 138 76.33 64.44 REMARK 500 ASN L 152 16.37 58.15 REMARK 500 ASP H 151 63.09 63.85 REMARK 500 GLN I 132 34.13 74.26 REMARK 500 SER I 138 75.07 -113.22 REMARK 500 ASN I 170 -78.54 -49.75 REMARK 500 LYS I 180 116.05 -28.52 REMARK 500 GLU I 181 57.26 31.29 REMARK 500 LYS I 191 -80.99 -113.58 REMARK 500 ASP I 192 64.72 -107.59 REMARK 500 ASN I 224 -128.83 -93.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 368 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH L 369 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH L 370 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH L 371 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH L 372 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH L 373 DISTANCE = 7.33 ANGSTROMS REMARK 525 HOH L 374 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH L 375 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH L 376 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH L 377 DISTANCE = 8.36 ANGSTROMS REMARK 525 HOH H 475 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH H 476 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH H 477 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH H 478 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH H 479 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH H 480 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH H 481 DISTANCE = 8.48 ANGSTROMS REMARK 525 HOH H 482 DISTANCE = 8.50 ANGSTROMS REMARK 525 HOH I 368 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH I 369 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH I 370 DISTANCE = 7.17 ANGSTROMS DBREF 7CHZ L 1 214 PDB 7CHZ 7CHZ 1 214 DBREF 7CHZ H 1 227 PDB 7CHZ 7CHZ 1 227 DBREF 7CHZ I 118 270 UNP P01584 IL1B_HUMAN 117 269 SEQADV 7CHZ LEU I 114 UNP P01584 EXPRESSION TAG SEQADV 7CHZ GLY I 115 UNP P01584 EXPRESSION TAG SEQADV 7CHZ SER I 116 UNP P01584 EXPRESSION TAG SEQADV 7CHZ ARG I 117 UNP P01584 EXPRESSION TAG SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN ASP VAL SER TRP GLY VAL ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER THR ALA SEQRES 5 L 214 SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 SER ASN PHE PRO ILE THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 227 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 227 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 227 PHE THR ILE LYS ASP MET ALA ILE HIS TRP VAL ARG GLN SEQRES 4 H 227 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE TRP SEQRES 5 H 227 PRO ARG GLU GLY PHE THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 227 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 H 227 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 227 ALA VAL TYR TYR CYS ALA ARG PHE ASN GLY TYR TRP ASN SEQRES 9 H 227 TYR ILE MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 H 227 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 227 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 227 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 227 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 227 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 227 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 227 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 227 PRO SER ASN THR LYS VAL ASP LYS LYS ALA GLU PRO LYS SEQRES 18 H 227 SER CYS ASP LYS THR HIS SEQRES 1 I 157 LEU GLY SER ARG ALA PRO VAL ARG SER LEU ASN CYS THR SEQRES 2 I 157 LEU ARG ASP SER GLN GLN LYS SER LEU VAL MET SER GLY SEQRES 3 I 157 PRO TYR GLU LEU LYS ALA LEU HIS LEU GLN GLY GLN ASP SEQRES 4 I 157 MET GLU GLN GLN VAL VAL PHE SER MET SER PHE VAL GLN SEQRES 5 I 157 GLY GLU GLU SER ASN ASP LYS ILE PRO VAL ALA LEU GLY SEQRES 6 I 157 LEU LYS GLU LYS ASN LEU TYR LEU SER CYS VAL LEU LYS SEQRES 7 I 157 ASP ASP LYS PRO THR LEU GLN LEU GLU SER VAL ASP PRO SEQRES 8 I 157 LYS ASN TYR PRO LYS LYS LYS MET GLU LYS ARG PHE VAL SEQRES 9 I 157 PHE ASN LYS ILE GLU ILE ASN ASN LYS LEU GLU PHE GLU SEQRES 10 I 157 SER ALA GLN PHE PRO ASN TRP TYR ILE SER THR SER GLN SEQRES 11 I 157 ALA GLU ASN MET PRO VAL PHE LEU GLY GLY THR LYS GLY SEQRES 12 I 157 GLY GLN ASP ILE THR ASP PHE THR MET GLN PHE VAL SER SEQRES 13 I 157 SER FORMUL 4 HOH *328(H2 O) HELIX 1 AA1 GLN L 79 PHE L 83 5 5 HELIX 2 AA2 SER L 121 SER L 127 1 7 HELIX 3 AA3 LYS L 183 LYS L 188 1 6 HELIX 4 AA4 THR H 28 MET H 32 5 5 HELIX 5 AA5 THR H 74 LYS H 76 5 3 HELIX 6 AA6 ARG H 87 THR H 91 5 5 HELIX 7 AA7 SER H 163 ALA H 165 5 3 HELIX 8 AA8 SER H 194 LEU H 196 5 3 HELIX 9 AA9 LYS H 208 ASN H 211 5 4 HELIX 10 AB1 GLN I 149 GLN I 156 5 8 HELIX 11 AB2 GLU I 213 ARG I 215 5 3 SHEET 1 AA1 4 MET L 4 SER L 7 0 SHEET 2 AA1 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA2 6 SER L 10 ALA L 13 0 SHEET 2 AA2 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA2 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA2 6 VAL L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA2 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA2 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA3 4 SER L 10 ALA L 13 0 SHEET 2 AA3 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA3 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA4 4 TYR L 173 SER L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 AA4 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AA5 4 ALA L 153 LEU L 154 0 SHEET 2 AA5 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AA5 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AA5 4 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 AA6 4 GLN H 3 SER H 7 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA6 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA6 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 AA7 6 GLY H 10 VAL H 12 0 SHEET 2 AA7 6 THR H 114 VAL H 118 1 O THR H 117 N GLY H 10 SHEET 3 AA7 6 ALA H 92 ASN H 100 -1 N ALA H 92 O VAL H 116 SHEET 4 AA7 6 ALA H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA7 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA7 6 THR H 58 TYR H 60 -1 O TYR H 59 N ARG H 50 SHEET 1 AA8 4 GLY H 10 VAL H 12 0 SHEET 2 AA8 4 THR H 114 VAL H 118 1 O THR H 117 N GLY H 10 SHEET 3 AA8 4 ALA H 92 ASN H 100 -1 N ALA H 92 O VAL H 116 SHEET 4 AA8 4 TYR H 105 TRP H 110 -1 O TYR H 105 N ASN H 100 SHEET 1 AA9 4 SER H 127 LEU H 131 0 SHEET 2 AA9 4 THR H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 AA9 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 149 SHEET 4 AA9 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 AB1 4 SER H 127 LEU H 131 0 SHEET 2 AB1 4 THR H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 AB1 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 149 SHEET 4 AB1 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 AB2 3 THR H 158 TRP H 161 0 SHEET 2 AB2 3 ILE H 202 HIS H 207 -1 O ASN H 204 N SER H 160 SHEET 3 AB2 3 THR H 212 LYS H 217 -1 O VAL H 214 N VAL H 205 SHEET 1 AB3 5 PRO I 195 SER I 201 0 SHEET 2 AB3 5 LEU I 184 LEU I 190 -1 N TYR I 185 O GLU I 200 SHEET 3 AB3 5 LYS I 172 LEU I 179 -1 N LEU I 177 O LEU I 186 SHEET 4 AB3 5 VAL I 217 ILE I 221 -1 O PHE I 218 N VAL I 175 SHEET 5 AB3 5 GLU I 228 SER I 231 -1 O GLU I 230 N ASN I 219 SHEET 1 AB4 6 PRO I 195 SER I 201 0 SHEET 2 AB4 6 LEU I 184 LEU I 190 -1 N TYR I 185 O GLU I 200 SHEET 3 AB4 6 LYS I 172 LEU I 179 -1 N LEU I 177 O LEU I 186 SHEET 4 AB4 6 PHE I 159 PHE I 163 -1 N SER I 160 O GLY I 178 SHEET 5 AB4 6 SER I 122 ASP I 129 -1 N CYS I 125 O PHE I 159 SHEET 6 AB4 6 PHE I 263 VAL I 268 -1 O THR I 264 N ARG I 128 SHEET 1 AB5 3 SER I 134 MET I 137 0 SHEET 2 AB5 3 LEU I 143 LEU I 146 -1 O LEU I 146 N SER I 134 SHEET 3 AB5 3 MET I 247 PRO I 248 -1 O MET I 247 N ALA I 145 SHEET 1 AB6 2 TYR I 238 SER I 240 0 SHEET 2 AB6 2 PHE I 250 GLY I 252 -1 O GLY I 252 N TYR I 238 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.15 SSBOND 4 CYS H 147 CYS H 203 1555 1555 2.12 CISPEP 1 SER L 7 PRO L 8 0 -24.77 CISPEP 2 PHE L 94 PRO L 95 0 5.68 CISPEP 3 TYR L 140 PRO L 141 0 2.94 CISPEP 4 PHE H 153 PRO H 154 0 -7.71 CISPEP 5 GLU H 155 PRO H 156 0 -9.20 CISPEP 6 TYR I 207 PRO I 208 0 4.94 CRYST1 155.694 112.699 38.935 90.00 94.53 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006423 0.000000 0.000509 0.00000 SCALE2 0.000000 0.008873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025764 0.00000