HEADER HYDROLASE 07-JUL-20 7CI4 TITLE CRYSTAL STRUCTURE OF P.AERUGINOSA LPXC IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE,UDP-3-O-[R-3- COMPND 5 HYDROXYMYRISTOYL]-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 6 EC: 3.5.1.108; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: LPXC, ENVA, PA4406; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE, ENVA, LPXC, PSEUDOMONAS KEYWDS 2 AERUGINOSA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MIMA,L.M.BAKER,A.SURGENOR,A.ROBERTSON REVDAT 3 29-NOV-23 7CI4 1 REMARK REVDAT 2 23-DEC-20 7CI4 1 JRNL REVDAT 1 02-DEC-20 7CI4 0 JRNL AUTH Y.YAMADA,H.TAKASHIMA,D.L.WALMSLEY,F.USHIYAMA,Y.MATSUDA, JRNL AUTH 2 H.KANAZAWA,T.YAMAGUCHI-SASAKI,N.TANAKA-YAMAMOTO,J.YAMAGISHI, JRNL AUTH 3 R.KURIMOTO-TSURUTA,Y.OGATA,N.OHTAKE,H.ANGOVE,L.BAKER, JRNL AUTH 4 R.HARRIS,A.MACIAS,A.ROBERTSON,A.SURGENOR,H.WATANABE, JRNL AUTH 5 K.NAKANO,M.MIMA,K.IWAMOTO,A.OKADA,I.TAKATA,K.HITAKA, JRNL AUTH 6 A.TANAKA,K.FUJITA,H.SUGIYAMA,R.E.HUBBARD JRNL TITL FRAGMENT-BASED DISCOVERY OF NOVEL NON-HYDROXAMATE LPXC JRNL TITL 2 INHIBITORS WITH ANTIBACTERIAL ACTIVITY. JRNL REF J.MED.CHEM. V. 63 14805 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 33210531 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01215 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 39816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2842 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.551 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4765 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4513 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6444 ; 1.601 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10427 ; 1.323 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 592 ; 7.742 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;32.738 ;22.031 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 826 ;16.141 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;16.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 624 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5350 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1026 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2377 ; 2.773 ; 3.223 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2376 ; 2.770 ; 3.221 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2966 ; 4.083 ; 4.817 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2967 ; 4.082 ; 4.821 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2388 ; 3.619 ; 3.778 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2383 ; 3.614 ; 3.777 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3472 ; 5.656 ; 5.487 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5185 ; 7.486 ;38.364 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5162 ; 7.471 ;38.275 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7CI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41967 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 23.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 7.470 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.32 REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3UHM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % W/V POLYETHYLENE GLYCOL 6,000 100 REMARK 280 MM HEPES PH 7.0 200 MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.59000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 166 REMARK 465 GLY B 167 REMARK 465 ARG B 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE B 160 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 103 -128.89 50.51 REMARK 500 ASP A 218 -150.11 -92.94 REMARK 500 MET B 62 -8.56 77.32 REMARK 500 MET B 103 -130.54 47.42 REMARK 500 SER B 210 -179.71 -178.74 REMARK 500 ASN B 224 62.98 -104.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HIS A 237 NE2 104.9 REMARK 620 3 ASP A 241 OD1 98.6 100.3 REMARK 620 4 FXU A1300 N10 115.2 132.2 98.4 REMARK 620 5 FXU A1300 O13 84.2 87.9 170.2 72.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 277 OD1 REMARK 620 2 ASP A 279 OD1 84.7 REMARK 620 3 HOH A1414 O 81.3 93.4 REMARK 620 4 HOH A1432 O 171.9 88.2 95.3 REMARK 620 5 HOH A1530 O 92.6 89.7 172.9 91.2 REMARK 620 6 HOH B1440 O 91.0 171.2 93.5 96.6 82.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1446 O REMARK 620 2 HOH A1509 O 85.9 REMARK 620 3 ASP B 277 OD1 89.5 90.6 REMARK 620 4 ASP B 279 OD1 172.1 89.7 84.0 REMARK 620 5 HOH B1410 O 98.9 93.1 171.0 87.9 REMARK 620 6 HOH B1425 O 94.1 173.9 83.2 89.6 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 NE2 REMARK 620 2 HIS B 237 NE2 105.9 REMARK 620 3 ASP B 241 OD1 96.0 93.6 REMARK 620 4 FXU B1300 N10 116.6 134.7 96.8 REMARK 620 5 FXU B1300 O13 86.7 92.8 172.0 75.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FXU A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FXU B 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 1303 DBREF 7CI4 A 1 299 UNP P47205 LPXC_PSEAE 1 299 DBREF 7CI4 B 1 299 UNP P47205 LPXC_PSEAE 1 299 SEQADV 7CI4 SER A 40 UNP P47205 CYS 40 ENGINEERED MUTATION SEQADV 7CI4 SER B 40 UNP P47205 CYS 40 ENGINEERED MUTATION SEQRES 1 A 299 MET ILE LYS GLN ARG THR LEU LYS ASN ILE ILE ARG ALA SEQRES 2 A 299 THR GLY VAL GLY LEU HIS SER GLY GLU LYS VAL TYR LEU SEQRES 3 A 299 THR LEU LYS PRO ALA PRO VAL ASP THR GLY ILE VAL PHE SEQRES 4 A 299 SER ARG THR ASP LEU ASP PRO VAL VAL GLU ILE PRO ALA SEQRES 5 A 299 ARG ALA GLU ASN VAL GLY GLU THR THR MET SER THR THR SEQRES 6 A 299 LEU VAL LYS GLY ASP VAL LYS VAL ASP THR VAL GLU HIS SEQRES 7 A 299 LEU LEU SER ALA MET ALA GLY LEU GLY ILE ASP ASN ALA SEQRES 8 A 299 TYR VAL GLU LEU SER ALA SER GLU VAL PRO ILE MET ASP SEQRES 9 A 299 GLY SER ALA GLY PRO PHE VAL PHE LEU ILE GLN SER ALA SEQRES 10 A 299 GLY LEU GLN GLU GLN GLU ALA ALA LYS LYS PHE ILE ARG SEQRES 11 A 299 ILE LYS ARG GLU VAL SER VAL GLU GLU GLY ASP LYS ARG SEQRES 12 A 299 ALA VAL PHE VAL PRO PHE ASP GLY PHE LYS VAL SER PHE SEQRES 13 A 299 GLU ILE ASP PHE ASP HIS PRO VAL PHE ARG GLY ARG THR SEQRES 14 A 299 GLN GLN ALA SER VAL ASP PHE SER SER THR SER PHE VAL SEQRES 15 A 299 LYS GLU VAL SER ARG ALA ARG THR PHE GLY PHE MET ARG SEQRES 16 A 299 ASP ILE GLU TYR LEU ARG SER GLN ASN LEU ALA LEU GLY SEQRES 17 A 299 GLY SER VAL GLU ASN ALA ILE VAL VAL ASP GLU ASN ARG SEQRES 18 A 299 VAL LEU ASN GLU ASP GLY LEU ARG TYR GLU ASP GLU PHE SEQRES 19 A 299 VAL LYS HIS LYS ILE LEU ASP ALA ILE GLY ASP LEU TYR SEQRES 20 A 299 LEU LEU GLY ASN SER LEU ILE GLY GLU PHE ARG GLY PHE SEQRES 21 A 299 LYS SER GLY HIS ALA LEU ASN ASN GLN LEU LEU ARG THR SEQRES 22 A 299 LEU ILE ALA ASP LYS ASP ALA TRP GLU VAL VAL THR PHE SEQRES 23 A 299 GLU ASP ALA ARG THR ALA PRO ILE SER TYR MET ARG PRO SEQRES 1 B 299 MET ILE LYS GLN ARG THR LEU LYS ASN ILE ILE ARG ALA SEQRES 2 B 299 THR GLY VAL GLY LEU HIS SER GLY GLU LYS VAL TYR LEU SEQRES 3 B 299 THR LEU LYS PRO ALA PRO VAL ASP THR GLY ILE VAL PHE SEQRES 4 B 299 SER ARG THR ASP LEU ASP PRO VAL VAL GLU ILE PRO ALA SEQRES 5 B 299 ARG ALA GLU ASN VAL GLY GLU THR THR MET SER THR THR SEQRES 6 B 299 LEU VAL LYS GLY ASP VAL LYS VAL ASP THR VAL GLU HIS SEQRES 7 B 299 LEU LEU SER ALA MET ALA GLY LEU GLY ILE ASP ASN ALA SEQRES 8 B 299 TYR VAL GLU LEU SER ALA SER GLU VAL PRO ILE MET ASP SEQRES 9 B 299 GLY SER ALA GLY PRO PHE VAL PHE LEU ILE GLN SER ALA SEQRES 10 B 299 GLY LEU GLN GLU GLN GLU ALA ALA LYS LYS PHE ILE ARG SEQRES 11 B 299 ILE LYS ARG GLU VAL SER VAL GLU GLU GLY ASP LYS ARG SEQRES 12 B 299 ALA VAL PHE VAL PRO PHE ASP GLY PHE LYS VAL SER PHE SEQRES 13 B 299 GLU ILE ASP PHE ASP HIS PRO VAL PHE ARG GLY ARG THR SEQRES 14 B 299 GLN GLN ALA SER VAL ASP PHE SER SER THR SER PHE VAL SEQRES 15 B 299 LYS GLU VAL SER ARG ALA ARG THR PHE GLY PHE MET ARG SEQRES 16 B 299 ASP ILE GLU TYR LEU ARG SER GLN ASN LEU ALA LEU GLY SEQRES 17 B 299 GLY SER VAL GLU ASN ALA ILE VAL VAL ASP GLU ASN ARG SEQRES 18 B 299 VAL LEU ASN GLU ASP GLY LEU ARG TYR GLU ASP GLU PHE SEQRES 19 B 299 VAL LYS HIS LYS ILE LEU ASP ALA ILE GLY ASP LEU TYR SEQRES 20 B 299 LEU LEU GLY ASN SER LEU ILE GLY GLU PHE ARG GLY PHE SEQRES 21 B 299 LYS SER GLY HIS ALA LEU ASN ASN GLN LEU LEU ARG THR SEQRES 22 B 299 LEU ILE ALA ASP LYS ASP ALA TRP GLU VAL VAL THR PHE SEQRES 23 B 299 GLU ASP ALA ARG THR ALA PRO ILE SER TYR MET ARG PRO HET FXU A1300 22 HET ZN A1301 1 HET MG A1302 1 HET CL A1303 1 HET FXU B1300 22 HET ZN B1301 1 HET MG B1302 1 HET CL B1303 1 HETNAM FXU (2R)-2-AZANYL-4-METHYLSULFONYL-N-[3- HETNAM 2 FXU (TRIFLUOROMETHYLOXY)PHENYL]BUTANAMIDE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 FXU 2(C12 H15 F3 N2 O4 S) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 6 CL 2(CL 1-) FORMUL 11 HOH *361(H2 O) HELIX 1 AA1 ARG A 53 VAL A 57 5 5 HELIX 2 AA2 VAL A 76 GLY A 87 1 12 HELIX 3 AA3 ALA A 107 GLY A 118 1 12 HELIX 4 AA4 HIS A 162 ARG A 166 5 5 HELIX 5 AA5 SER A 177 VAL A 185 1 9 HELIX 6 AA6 MET A 194 GLN A 203 1 10 HELIX 7 AA7 ASN A 224 LEU A 228 5 5 HELIX 8 AA8 ASP A 232 TYR A 247 1 16 HELIX 9 AA9 LEU A 248 GLY A 250 5 3 HELIX 10 AB1 GLY A 263 ASP A 277 1 15 HELIX 11 AB2 ASP A 288 ALA A 292 5 5 HELIX 12 AB3 ARG B 53 VAL B 57 5 5 HELIX 13 AB4 VAL B 76 LEU B 86 1 11 HELIX 14 AB5 ALA B 107 GLY B 118 1 12 HELIX 15 AB6 SER B 177 VAL B 185 1 9 HELIX 16 AB7 MET B 194 GLN B 203 1 10 HELIX 17 AB8 ASN B 224 LEU B 228 5 5 HELIX 18 AB9 ASP B 232 TYR B 247 1 16 HELIX 19 AC1 LEU B 248 GLY B 250 5 3 HELIX 20 AC2 GLY B 263 ASP B 277 1 15 HELIX 21 AC3 ASP B 288 ALA B 292 5 5 SHEET 1 AA1 2 LYS A 3 LEU A 7 0 SHEET 2 AA1 2 LEU A 119 ALA A 125 -1 O GLN A 120 N THR A 6 SHEET 1 AA2 5 ILE A 11 VAL A 16 0 SHEET 2 AA2 5 LYS A 23 LYS A 29 -1 O LEU A 26 N ALA A 13 SHEET 3 AA2 5 ALA A 91 LEU A 95 -1 O GLU A 94 N THR A 27 SHEET 4 AA2 5 ILE A 37 ARG A 41 1 N VAL A 38 O VAL A 93 SHEET 5 AA2 5 VAL A 48 PRO A 51 -1 O VAL A 48 N ARG A 41 SHEET 1 AA3 2 LEU A 66 LYS A 68 0 SHEET 2 AA3 2 VAL A 71 VAL A 73 -1 O VAL A 73 N LEU A 66 SHEET 1 AA4 5 VAL A 135 GLU A 139 0 SHEET 2 AA4 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA4 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA4 5 PHE A 152 ILE A 158 1 N LYS A 153 O PHE A 257 SHEET 5 AA4 5 GLN A 170 ASP A 175 -1 O VAL A 174 N VAL A 154 SHEET 1 AA5 5 VAL A 135 GLU A 139 0 SHEET 2 AA5 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA5 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA5 5 PHE A 128 ILE A 131 1 N ILE A 131 O ILE A 254 SHEET 5 AA5 5 TRP A 281 VAL A 284 -1 O GLU A 282 N ARG A 130 SHEET 1 AA6 2 PHE A 191 PHE A 193 0 SHEET 2 AA6 2 ILE A 215 VAL A 217 1 O ILE A 215 N GLY A 192 SHEET 1 AA7 2 LYS B 3 LEU B 7 0 SHEET 2 AA7 2 LEU B 119 ALA B 125 -1 O GLN B 120 N THR B 6 SHEET 1 AA8 5 ILE B 11 VAL B 16 0 SHEET 2 AA8 5 LYS B 23 PRO B 30 -1 O LEU B 26 N ALA B 13 SHEET 3 AA8 5 ALA B 91 LEU B 95 -1 O GLU B 94 N THR B 27 SHEET 4 AA8 5 ILE B 37 ARG B 41 1 N VAL B 38 O VAL B 93 SHEET 5 AA8 5 VAL B 48 PRO B 51 -1 O ILE B 50 N PHE B 39 SHEET 1 AA9 2 LEU B 66 LYS B 68 0 SHEET 2 AA9 2 VAL B 71 VAL B 73 -1 O VAL B 71 N LYS B 68 SHEET 1 AB1 5 VAL B 135 GLU B 139 0 SHEET 2 AB1 5 LYS B 142 VAL B 147 -1 O PHE B 146 N VAL B 135 SHEET 3 AB1 5 SER B 252 PHE B 260 -1 O PHE B 260 N ARG B 143 SHEET 4 AB1 5 PHE B 152 ILE B 158 1 N SER B 155 O PHE B 257 SHEET 5 AB1 5 GLN B 170 ASP B 175 -1 O VAL B 174 N VAL B 154 SHEET 1 AB2 5 VAL B 135 GLU B 139 0 SHEET 2 AB2 5 LYS B 142 VAL B 147 -1 O PHE B 146 N VAL B 135 SHEET 3 AB2 5 SER B 252 PHE B 260 -1 O PHE B 260 N ARG B 143 SHEET 4 AB2 5 PHE B 128 ILE B 131 1 N ILE B 129 O ILE B 254 SHEET 5 AB2 5 TRP B 281 VAL B 284 -1 O GLU B 282 N ARG B 130 SHEET 1 AB3 2 PHE B 191 PHE B 193 0 SHEET 2 AB3 2 ILE B 215 VAL B 217 1 O ILE B 215 N GLY B 192 LINK NE2 HIS A 78 ZN ZN A1301 1555 1555 2.03 LINK NE2 HIS A 237 ZN ZN A1301 1555 1555 2.05 LINK OD1 ASP A 241 ZN ZN A1301 1555 1555 2.07 LINK OD1 ASP A 277 MG MG A1302 1555 1555 2.05 LINK OD1 ASP A 279 MG MG A1302 1555 1555 2.01 LINK N10 FXU A1300 ZN ZN A1301 1555 1555 1.96 LINK O13 FXU A1300 ZN ZN A1301 1555 1555 2.38 LINK MG MG A1302 O HOH A1414 1555 1555 1.90 LINK MG MG A1302 O HOH A1432 1555 1555 2.11 LINK MG MG A1302 O HOH A1530 1555 1555 2.12 LINK MG MG A1302 O HOH B1440 1555 1555 2.00 LINK O HOH A1446 MG MG B1302 1555 1555 2.01 LINK O HOH A1509 MG MG B1302 1555 1555 2.12 LINK NE2 HIS B 78 ZN ZN B1301 1555 1555 2.04 LINK NE2 HIS B 237 ZN ZN B1301 1555 1555 2.00 LINK OD1 ASP B 241 ZN ZN B1301 1555 1555 2.18 LINK OD1 ASP B 277 MG MG B1302 1555 1555 2.10 LINK OD1 ASP B 279 MG MG B1302 1555 1555 2.02 LINK N10 FXU B1300 ZN ZN B1301 1555 1555 1.95 LINK O13 FXU B1300 ZN ZN B1301 1555 1555 2.40 LINK MG MG B1302 O HOH B1410 1555 1555 2.02 LINK MG MG B1302 O HOH B1425 1555 1555 2.08 CISPEP 1 ASP A 45 PRO A 46 0 0.59 CISPEP 2 ASP B 45 PRO B 46 0 -2.68 SITE 1 AC1 16 LEU A 18 MET A 62 GLU A 77 HIS A 78 SITE 2 AC1 16 THR A 190 GLY A 192 ILE A 197 ASN A 213 SITE 3 AC1 16 ALA A 214 HIS A 237 LYS A 238 ASP A 241 SITE 4 AC1 16 HIS A 264 ZN A1301 HOH A1452 HOH A1560 SITE 1 AC2 4 HIS A 78 HIS A 237 ASP A 241 FXU A1300 SITE 1 AC3 6 ASP A 277 ASP A 279 HOH A1414 HOH A1432 SITE 2 AC3 6 HOH A1530 HOH B1440 SITE 1 AC4 2 ARG A 143 ARG A 258 SITE 1 AC5 16 LEU B 18 MET B 62 GLU B 77 HIS B 78 SITE 2 AC5 16 THR B 190 ILE B 197 ASN B 213 ALA B 214 SITE 3 AC5 16 HIS B 237 LYS B 238 ASP B 241 HIS B 264 SITE 4 AC5 16 ZN B1301 HOH B1467 HOH B1502 HOH B1506 SITE 1 AC6 4 HIS B 78 HIS B 237 ASP B 241 FXU B1300 SITE 1 AC7 6 HOH A1446 HOH A1509 ASP B 277 ASP B 279 SITE 2 AC7 6 HOH B1410 HOH B1425 SITE 1 AC8 2 ARG B 41 HOH B1537 CRYST1 68.367 51.180 96.763 90.00 108.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014627 0.000000 0.004814 0.00000 SCALE2 0.000000 0.019539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010880 0.00000