HEADER HYDROLASE 09-JUL-20 7CJ1 TITLE THE CRYSTAL STRUCTURE OF FXIA SERINE PROTEASE DOMAIN IN COMPLEX WITH TITLE 2 BENZAMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XI; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: FXI,PLASMA THROMBOPLASTIN ANTECEDENT,PTA; COMPND 5 EC: 3.4.21.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F11; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS FACTOR XI, BLOOD COAGULATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.JIANG,M.HUANG REVDAT 3 29-NOV-23 7CJ1 1 REMARK REVDAT 2 20-APR-22 7CJ1 1 JRNL REMARK REVDAT 1 13-APR-22 7CJ1 0 JRNL AUTH L.JIANG,M.HUANG JRNL TITL THE CRYSTAL STRUCTURE OF FXIA SERINE PROTEASE DOMAIN IN JRNL TITL 2 COMPLEX WITH BENZAMIDINE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 15888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 850 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.24000 REMARK 3 B12 (A**2) : 0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.582 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.423 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.241 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.876 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.823 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7720 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10428 ; 1.163 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 920 ; 5.136 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;36.700 ;23.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1336 ;17.248 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;16.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1120 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5744 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 16 A 243 3 REMARK 3 1 B 16 B 243 3 REMARK 3 1 C 16 C 243 3 REMARK 3 1 D 16 D 243 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 944 ; 0.020 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 B (A): 944 ; 0.020 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 C (A): 944 ; 0.030 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 D (A): 944 ; 0.020 ; 0.050 REMARK 3 LOOSE POSITIONAL 1 A (A): 933 ; 0.090 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 933 ; 0.080 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 933 ; 0.090 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 D (A): 933 ; 0.080 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 944 ; 0.030 ; 0.500 REMARK 3 TIGHT THERMAL 1 B (A**2): 944 ; 0.030 ; 0.500 REMARK 3 TIGHT THERMAL 1 C (A**2): 944 ; 0.030 ; 0.500 REMARK 3 TIGHT THERMAL 1 D (A**2): 944 ; 0.030 ; 0.500 REMARK 3 LOOSE THERMAL 1 A (A**2): 933 ; 0.040 ;10.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 933 ; 0.040 ;10.000 REMARK 3 LOOSE THERMAL 1 C (A**2): 933 ; 0.040 ;10.000 REMARK 3 LOOSE THERMAL 1 D (A**2): 933 ; 0.040 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16815 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.13300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1ZHR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG2000 MME, 0.1 M TRIS-HCL PH8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.71200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 223.42400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS C 136 SG CYS C 201 1.06 REMARK 500 SG CYS B 136 SG CYS B 201 1.10 REMARK 500 SG CYS D 136 SG CYS D 201 1.24 REMARK 500 SG CYS A 136 SG CYS A 201 1.28 REMARK 500 OG SER A 198B O HOH A 1101 2.11 REMARK 500 CB CYS C 136 SG CYS C 201 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 111 NH1 ARG A 185 1665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 243 CD GLN A 243 NE2 -0.178 REMARK 500 ASP B 148 C LYS B 149 N 0.162 REMARK 500 CYS C 201 CB CYS C 201 SG 0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 63 CD - CE - NZ ANGL. DEV. = 16.5 DEGREES REMARK 500 PRO A 198 C - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 LYS B 63 CD - CE - NZ ANGL. DEV. = 17.2 DEGREES REMARK 500 PRO B 121 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO B 198 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 CYS B 201 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 PRO C 198 C - N - CD ANGL. DEV. = -16.9 DEGREES REMARK 500 CYS C 201 CB - CA - C ANGL. DEV. = 9.3 DEGREES REMARK 500 CYS C 201 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 LYS D 145 CD - CE - NZ ANGL. DEV. = 15.8 DEGREES REMARK 500 CYS D 201 CB - CA - C ANGL. DEV. = 7.3 DEGREES REMARK 500 CYS D 201 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 135 73.94 -115.89 REMARK 500 ARG A 147 72.15 -112.17 REMARK 500 ASP A 148 -157.34 -135.16 REMARK 500 GLU A 202C -0.22 64.93 REMARK 500 ARG B 119 160.57 173.16 REMARK 500 ASP B 135 73.76 -115.49 REMARK 500 ARG B 147 67.40 -107.01 REMARK 500 ASP B 148 -158.19 -135.27 REMARK 500 LYS B 149 -161.91 -125.25 REMARK 500 GLU B 202C -0.24 64.42 REMARK 500 ASP C 135 72.65 -114.01 REMARK 500 ARG C 147 72.47 -113.56 REMARK 500 LYS C 149 -168.94 -127.52 REMARK 500 GLN D 48 45.16 -143.46 REMARK 500 ARG D 119 158.58 178.61 REMARK 500 ASP D 135 72.93 -113.86 REMARK 500 ARG D 147 75.17 -110.32 REMARK 500 LYS D 149 -159.33 -123.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 7CJ1 A 16 243 UNP P03951 FA11_HUMAN 388 623 DBREF 7CJ1 B 16 243 UNP P03951 FA11_HUMAN 388 623 DBREF 7CJ1 C 16 243 UNP P03951 FA11_HUMAN 388 623 DBREF 7CJ1 D 16 243 UNP P03951 FA11_HUMAN 388 623 SEQADV 7CJ1 GLN A 73 UNP P03951 ASN 450 CONFLICT SEQADV 7CJ1 GLN A 113 UNP P03951 ASN 491 CONFLICT SEQADV 7CJ1 SER A 123 UNP P03951 CYS 500 CONFLICT SEQADV 7CJ1 GLN B 73 UNP P03951 ASN 450 CONFLICT SEQADV 7CJ1 GLN B 113 UNP P03951 ASN 491 CONFLICT SEQADV 7CJ1 SER B 123 UNP P03951 CYS 500 CONFLICT SEQADV 7CJ1 GLN C 73 UNP P03951 ASN 450 CONFLICT SEQADV 7CJ1 GLN C 113 UNP P03951 ASN 491 CONFLICT SEQADV 7CJ1 SER C 123 UNP P03951 CYS 500 CONFLICT SEQADV 7CJ1 GLN D 73 UNP P03951 ASN 450 CONFLICT SEQADV 7CJ1 GLN D 113 UNP P03951 ASN 491 CONFLICT SEQADV 7CJ1 SER D 123 UNP P03951 CYS 500 CONFLICT SEQRES 1 A 236 ILE VAL GLY GLY THR ALA SER VAL ARG GLY GLU TRP PRO SEQRES 2 A 236 TRP GLN VAL THR LEU HIS THR THR SER PRO THR GLN ARG SEQRES 3 A 236 HIS LEU CYS GLY GLY SER ILE ILE GLY ASN GLN TRP ILE SEQRES 4 A 236 LEU THR ALA ALA HIS CYS PHE TYR GLY VAL GLU SER PRO SEQRES 5 A 236 LYS ILE LEU ARG VAL TYR SER GLY ILE LEU GLN GLN SER SEQRES 6 A 236 GLU ILE LYS GLU ASP THR SER PHE PHE GLY VAL GLN GLU SEQRES 7 A 236 ILE ILE ILE HIS ASP GLN TYR LYS MET ALA GLU SER GLY SEQRES 8 A 236 TYR ASP ILE ALA LEU LEU LYS LEU GLU THR THR VAL GLN SEQRES 9 A 236 TYR THR ASP SER GLN ARG PRO ILE SER LEU PRO SER LYS SEQRES 10 A 236 GLY ASP ARG ASN VAL ILE TYR THR ASP CYS TRP VAL THR SEQRES 11 A 236 GLY TRP GLY TYR ARG LYS LEU ARG ASP LYS ILE GLN ASN SEQRES 12 A 236 THR LEU GLN LYS ALA LYS ILE PRO LEU VAL THR ASN GLU SEQRES 13 A 236 GLU CYS GLN LYS ARG TYR ARG GLY HIS LYS ILE THR HIS SEQRES 14 A 236 LYS MET ILE CYS ALA GLY TYR ARG GLU GLY GLY LYS ASP SEQRES 15 A 236 ALA CYS LYS GLY ASP SER GLY GLY PRO LEU SER CYS LYS SEQRES 16 A 236 HIS ASN GLU VAL TRP HIS LEU VAL GLY ILE THR SER TRP SEQRES 17 A 236 GLY GLU GLY CYS ALA GLN ARG GLU ARG PRO GLY VAL TYR SEQRES 18 A 236 THR ASN VAL VAL GLU TYR VAL ASP TRP ILE LEU GLU LYS SEQRES 19 A 236 THR GLN SEQRES 1 B 236 ILE VAL GLY GLY THR ALA SER VAL ARG GLY GLU TRP PRO SEQRES 2 B 236 TRP GLN VAL THR LEU HIS THR THR SER PRO THR GLN ARG SEQRES 3 B 236 HIS LEU CYS GLY GLY SER ILE ILE GLY ASN GLN TRP ILE SEQRES 4 B 236 LEU THR ALA ALA HIS CYS PHE TYR GLY VAL GLU SER PRO SEQRES 5 B 236 LYS ILE LEU ARG VAL TYR SER GLY ILE LEU GLN GLN SER SEQRES 6 B 236 GLU ILE LYS GLU ASP THR SER PHE PHE GLY VAL GLN GLU SEQRES 7 B 236 ILE ILE ILE HIS ASP GLN TYR LYS MET ALA GLU SER GLY SEQRES 8 B 236 TYR ASP ILE ALA LEU LEU LYS LEU GLU THR THR VAL GLN SEQRES 9 B 236 TYR THR ASP SER GLN ARG PRO ILE SER LEU PRO SER LYS SEQRES 10 B 236 GLY ASP ARG ASN VAL ILE TYR THR ASP CYS TRP VAL THR SEQRES 11 B 236 GLY TRP GLY TYR ARG LYS LEU ARG ASP LYS ILE GLN ASN SEQRES 12 B 236 THR LEU GLN LYS ALA LYS ILE PRO LEU VAL THR ASN GLU SEQRES 13 B 236 GLU CYS GLN LYS ARG TYR ARG GLY HIS LYS ILE THR HIS SEQRES 14 B 236 LYS MET ILE CYS ALA GLY TYR ARG GLU GLY GLY LYS ASP SEQRES 15 B 236 ALA CYS LYS GLY ASP SER GLY GLY PRO LEU SER CYS LYS SEQRES 16 B 236 HIS ASN GLU VAL TRP HIS LEU VAL GLY ILE THR SER TRP SEQRES 17 B 236 GLY GLU GLY CYS ALA GLN ARG GLU ARG PRO GLY VAL TYR SEQRES 18 B 236 THR ASN VAL VAL GLU TYR VAL ASP TRP ILE LEU GLU LYS SEQRES 19 B 236 THR GLN SEQRES 1 C 236 ILE VAL GLY GLY THR ALA SER VAL ARG GLY GLU TRP PRO SEQRES 2 C 236 TRP GLN VAL THR LEU HIS THR THR SER PRO THR GLN ARG SEQRES 3 C 236 HIS LEU CYS GLY GLY SER ILE ILE GLY ASN GLN TRP ILE SEQRES 4 C 236 LEU THR ALA ALA HIS CYS PHE TYR GLY VAL GLU SER PRO SEQRES 5 C 236 LYS ILE LEU ARG VAL TYR SER GLY ILE LEU GLN GLN SER SEQRES 6 C 236 GLU ILE LYS GLU ASP THR SER PHE PHE GLY VAL GLN GLU SEQRES 7 C 236 ILE ILE ILE HIS ASP GLN TYR LYS MET ALA GLU SER GLY SEQRES 8 C 236 TYR ASP ILE ALA LEU LEU LYS LEU GLU THR THR VAL GLN SEQRES 9 C 236 TYR THR ASP SER GLN ARG PRO ILE SER LEU PRO SER LYS SEQRES 10 C 236 GLY ASP ARG ASN VAL ILE TYR THR ASP CYS TRP VAL THR SEQRES 11 C 236 GLY TRP GLY TYR ARG LYS LEU ARG ASP LYS ILE GLN ASN SEQRES 12 C 236 THR LEU GLN LYS ALA LYS ILE PRO LEU VAL THR ASN GLU SEQRES 13 C 236 GLU CYS GLN LYS ARG TYR ARG GLY HIS LYS ILE THR HIS SEQRES 14 C 236 LYS MET ILE CYS ALA GLY TYR ARG GLU GLY GLY LYS ASP SEQRES 15 C 236 ALA CYS LYS GLY ASP SER GLY GLY PRO LEU SER CYS LYS SEQRES 16 C 236 HIS ASN GLU VAL TRP HIS LEU VAL GLY ILE THR SER TRP SEQRES 17 C 236 GLY GLU GLY CYS ALA GLN ARG GLU ARG PRO GLY VAL TYR SEQRES 18 C 236 THR ASN VAL VAL GLU TYR VAL ASP TRP ILE LEU GLU LYS SEQRES 19 C 236 THR GLN SEQRES 1 D 236 ILE VAL GLY GLY THR ALA SER VAL ARG GLY GLU TRP PRO SEQRES 2 D 236 TRP GLN VAL THR LEU HIS THR THR SER PRO THR GLN ARG SEQRES 3 D 236 HIS LEU CYS GLY GLY SER ILE ILE GLY ASN GLN TRP ILE SEQRES 4 D 236 LEU THR ALA ALA HIS CYS PHE TYR GLY VAL GLU SER PRO SEQRES 5 D 236 LYS ILE LEU ARG VAL TYR SER GLY ILE LEU GLN GLN SER SEQRES 6 D 236 GLU ILE LYS GLU ASP THR SER PHE PHE GLY VAL GLN GLU SEQRES 7 D 236 ILE ILE ILE HIS ASP GLN TYR LYS MET ALA GLU SER GLY SEQRES 8 D 236 TYR ASP ILE ALA LEU LEU LYS LEU GLU THR THR VAL GLN SEQRES 9 D 236 TYR THR ASP SER GLN ARG PRO ILE SER LEU PRO SER LYS SEQRES 10 D 236 GLY ASP ARG ASN VAL ILE TYR THR ASP CYS TRP VAL THR SEQRES 11 D 236 GLY TRP GLY TYR ARG LYS LEU ARG ASP LYS ILE GLN ASN SEQRES 12 D 236 THR LEU GLN LYS ALA LYS ILE PRO LEU VAL THR ASN GLU SEQRES 13 D 236 GLU CYS GLN LYS ARG TYR ARG GLY HIS LYS ILE THR HIS SEQRES 14 D 236 LYS MET ILE CYS ALA GLY TYR ARG GLU GLY GLY LYS ASP SEQRES 15 D 236 ALA CYS LYS GLY ASP SER GLY GLY PRO LEU SER CYS LYS SEQRES 16 D 236 HIS ASN GLU VAL TRP HIS LEU VAL GLY ILE THR SER TRP SEQRES 17 D 236 GLY GLU GLY CYS ALA GLN ARG GLU ARG PRO GLY VAL TYR SEQRES 18 D 236 THR ASN VAL VAL GLU TYR VAL ASP TRP ILE LEU GLU LYS SEQRES 19 D 236 THR GLN HET BEN A1001 9 HET BEN B1001 9 HET BEN C1001 9 HET BEN D1001 9 HETNAM BEN BENZAMIDINE FORMUL 5 BEN 4(C7 H8 N2) FORMUL 9 HOH *142(H2 O) HELIX 1 AA1 ALA A 55 TYR A 59A 5 6 HELIX 2 AA2 SER A 61 LYS A 63 5 3 HELIX 3 AA3 GLN A 73 ILE A 77 5 5 HELIX 4 AA4 MET A 96 GLY A 100 5 5 HELIX 5 AA5 LYS A 127 ASN A 131 5 5 HELIX 6 AA6 THR A 164 TYR A 172 1 9 HELIX 7 AA7 TYR A 234 THR A 242 1 9 HELIX 8 AA8 ALA B 55 TYR B 59A 5 6 HELIX 9 AA9 SER B 61 LYS B 63 5 3 HELIX 10 AB1 GLN B 73 ILE B 77 5 5 HELIX 11 AB2 MET B 96 GLY B 100 5 5 HELIX 12 AB3 LYS B 127 ASN B 131 5 5 HELIX 13 AB4 THR B 164 TYR B 172 1 9 HELIX 14 AB5 TYR B 234 THR B 242 1 9 HELIX 15 AB6 ALA C 55 TYR C 59A 5 6 HELIX 16 AB7 SER C 61 LYS C 63 5 3 HELIX 17 AB8 GLN C 73 ILE C 77 5 5 HELIX 18 AB9 MET C 96 GLY C 100 5 5 HELIX 19 AC1 LYS C 127 ASN C 131 5 5 HELIX 20 AC2 THR C 164 TYR C 172 1 9 HELIX 21 AC3 TYR C 234 THR C 242 1 9 HELIX 22 AC4 ALA D 55 TYR D 59A 5 6 HELIX 23 AC5 SER D 61 LYS D 63 5 3 HELIX 24 AC6 GLN D 73 ILE D 77 5 5 HELIX 25 AC7 MET D 96 GLY D 100 5 5 HELIX 26 AC8 SER D 126 ASN D 131 5 6 HELIX 27 AC9 THR D 164 TYR D 172 1 9 HELIX 28 AD1 TYR D 234 THR D 242 1 9 SHEET 1 AA1 8 THR A 20 ALA A 21 0 SHEET 2 AA1 8 GLN A 156 LYS A 159 -1 O LYS A 157 N THR A 20 SHEET 3 AA1 8 CYS A 136 GLY A 140 -1 N VAL A 138 O ALA A 158 SHEET 4 AA1 8 PRO A 198 HIS A 202A-1 O SER A 198B N TRP A 137 SHEET 5 AA1 8 VAL A 202D TRP A 215 -1 O VAL A 202D N HIS A 202A SHEET 6 AA1 8 GLY A 226 ASN A 230 -1 O VAL A 227 N TRP A 215 SHEET 7 AA1 8 MET A 180 ALA A 183 -1 N ILE A 181 O TYR A 228 SHEET 8 AA1 8 LEU A 162 VAL A 163 -1 N VAL A 163 O CYS A 182 SHEET 1 AA2 6 LEU A 65 SER A 69 0 SHEET 2 AA2 6 GLN A 30 THR A 35 -1 N HIS A 34 O ARG A 66 SHEET 3 AA2 6 ARG A 37D GLY A 46 -1 O LEU A 39 N LEU A 33 SHEET 4 AA2 6 TRP A 51 THR A 54 -1 O LEU A 53 N SER A 43 SHEET 5 AA2 6 ALA A 104 LEU A 108 -1 O ALA A 104 N THR A 54 SHEET 6 AA2 6 VAL A 85 ILE A 90 -1 N GLN A 86 O LYS A 107 SHEET 1 AA3 8 THR B 20 ALA B 21 0 SHEET 2 AA3 8 GLN B 156 LYS B 159 -1 O LYS B 157 N THR B 20 SHEET 3 AA3 8 CYS B 136 GLY B 140 -1 N VAL B 138 O ALA B 158 SHEET 4 AA3 8 PRO B 198 HIS B 202A-1 O SER B 198B N TRP B 137 SHEET 5 AA3 8 VAL B 202D TRP B 215 -1 O VAL B 202D N HIS B 202A SHEET 6 AA3 8 GLY B 226 ASN B 230 -1 O VAL B 227 N TRP B 215 SHEET 7 AA3 8 MET B 180 ALA B 183 -1 N ILE B 181 O TYR B 228 SHEET 8 AA3 8 LEU B 162 VAL B 163 -1 N VAL B 163 O CYS B 182 SHEET 1 AA4 6 LEU B 65 SER B 69 0 SHEET 2 AA4 6 GLN B 30 THR B 35 -1 N HIS B 34 O ARG B 66 SHEET 3 AA4 6 ARG B 37D GLY B 46 -1 O LEU B 39 N LEU B 33 SHEET 4 AA4 6 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 43 SHEET 5 AA4 6 ALA B 104 LEU B 108 -1 O ALA B 104 N THR B 54 SHEET 6 AA4 6 VAL B 85 ILE B 90 -1 N GLN B 86 O LYS B 107 SHEET 1 AA5 8 THR C 20 ALA C 21 0 SHEET 2 AA5 8 GLN C 156 LYS C 159 -1 O LYS C 157 N THR C 20 SHEET 3 AA5 8 CYS C 136 GLY C 140 -1 N VAL C 138 O ALA C 158 SHEET 4 AA5 8 PRO C 198 HIS C 202A-1 O SER C 198B N TRP C 137 SHEET 5 AA5 8 VAL C 202D TRP C 215 -1 O VAL C 202D N HIS C 202A SHEET 6 AA5 8 GLY C 226 ASN C 230 -1 O VAL C 227 N TRP C 215 SHEET 7 AA5 8 MET C 180 ALA C 183 -1 N ILE C 181 O TYR C 228 SHEET 8 AA5 8 LEU C 162 VAL C 163 -1 N VAL C 163 O CYS C 182 SHEET 1 AA6 6 LEU C 65 SER C 69 0 SHEET 2 AA6 6 GLN C 30 THR C 35 -1 N HIS C 34 O ARG C 66 SHEET 3 AA6 6 ARG C 37D GLY C 46 -1 O LEU C 39 N LEU C 33 SHEET 4 AA6 6 TRP C 51 THR C 54 -1 O LEU C 53 N SER C 43 SHEET 5 AA6 6 ALA C 104 LEU C 108 -1 O ALA C 104 N THR C 54 SHEET 6 AA6 6 VAL C 85 ILE C 90 -1 N GLN C 86 O LYS C 107 SHEET 1 AA7 8 THR D 20 ALA D 21 0 SHEET 2 AA7 8 GLN D 156 LYS D 159 -1 O LYS D 157 N THR D 20 SHEET 3 AA7 8 CYS D 136 GLY D 140 -1 N VAL D 138 O ALA D 158 SHEET 4 AA7 8 PRO D 198 HIS D 202A-1 O SER D 198B N TRP D 137 SHEET 5 AA7 8 VAL D 202D TRP D 215 -1 O VAL D 202D N HIS D 202A SHEET 6 AA7 8 GLY D 226 ASN D 230 -1 O VAL D 227 N TRP D 215 SHEET 7 AA7 8 MET D 180 ALA D 183 -1 N ILE D 181 O TYR D 228 SHEET 8 AA7 8 LEU D 162 VAL D 163 -1 N VAL D 163 O CYS D 182 SHEET 1 AA8 6 LEU D 65 SER D 69 0 SHEET 2 AA8 6 GLN D 30 THR D 35 -1 N HIS D 34 O ARG D 66 SHEET 3 AA8 6 ARG D 37D GLY D 46 -1 O LEU D 39 N LEU D 33 SHEET 4 AA8 6 TRP D 51 THR D 54 -1 O LEU D 53 N SER D 43 SHEET 5 AA8 6 ALA D 104 LEU D 108 -1 O ALA D 104 N THR D 54 SHEET 6 AA8 6 VAL D 85 ILE D 90 -1 N GLN D 86 O LYS D 107 SSBOND 1 CYS A 40 CYS A 58 1555 1555 2.03 SSBOND 2 CYS A 168 CYS A 182 1555 1555 2.03 SSBOND 3 CYS A 191 CYS A 219 1555 1555 2.04 SSBOND 4 CYS B 40 CYS B 58 1555 1555 1.99 SSBOND 5 CYS B 168 CYS B 182 1555 1555 2.03 SSBOND 6 CYS B 191 CYS B 219 1555 1555 2.04 SSBOND 7 CYS C 40 CYS C 58 1555 1555 2.03 SSBOND 8 CYS C 168 CYS C 182 1555 1555 2.02 SSBOND 9 CYS C 191 CYS C 219 1555 1555 2.02 SSBOND 10 CYS D 40 CYS D 58 1555 1555 2.03 SSBOND 11 CYS D 168 CYS D 182 1555 1555 2.03 SSBOND 12 CYS D 191 CYS D 219 1555 1555 2.02 CISPEP 1 SER A 37 PRO A 37A 0 -5.12 CISPEP 2 SER B 37 PRO B 37A 0 -11.00 CISPEP 3 SER C 37 PRO C 37A 0 -5.25 CISPEP 4 SER D 37 PRO D 37A 0 -5.97 CRYST1 49.084 49.084 335.136 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020373 0.011762 0.000000 0.00000 SCALE2 0.000000 0.023525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002984 0.00000