HEADER OXIDOREDUCTASE 14-JUL-20 7CJW TITLE SOLUTION STRUCTURE OF MONOMERIC SUPEROXIDE DISMUTASE 1 WITH AN TITLE 2 ADDITIONAL MUTATION H46W IN A CROWDED ENVIRONMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOMERIC HUMAN CU,ZN SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: LOOPS IV AND VII DELETED, APO FORM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: SOD1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DISMUTASE, MONOMER, AMYLOID, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.IWAKAWA,D.MORIMOTO,E.WALINDA,J.DANIELSSON,M.SHIRAKAWA,K.SUGASE REVDAT 3 15-MAY-24 7CJW 1 REMARK REVDAT 2 14-JUN-23 7CJW 1 REMARK REVDAT 1 26-MAY-21 7CJW 0 JRNL AUTH N.IWAKAWA,D.MORIMOTO,E.WALINDA,S.LEEB,M.SHIRAKAWA, JRNL AUTH 2 J.DANIELSSON,K.SUGASE JRNL TITL TRANSIENT DIFFUSIVE INTERACTIONS WITH A PROTEIN CROWDER JRNL TITL 2 AFFECT AGGREGATION PROCESSES OF SUPEROXIDE DISMUTASE 1 JRNL TITL 3 BETA-BARREL. JRNL REF J.PHYS.CHEM.B V. 125 2521 2021 JRNL REFN ISSN 1089-5647 JRNL PMID 33657322 JRNL DOI 10.1021/ACS.JPCB.0C11162 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.5, MOLMOL 2K.2 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), KORADI, REMARK 3 BILLETER AND WUTHRICH (MOLMOL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CJW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300014389. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] MONOMERIC REMARK 210 HUMAN CU,ZN SUPEROXIDE DISMUTASE, REMARK 210 LOOPS IV AND VII DELETED, APO REMARK 210 FORM, WITH AN ADDITIONAL REMARK 210 MUTATION H46W, 10 MM BIS-TRIS, REMARK 210 50 MG/ML LYSOZYME FROM EGG WHITE, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-15N HSQC; 2D 1H- REMARK 210 13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D HNCO; 3D HN(CA) REMARK 210 CO; 3D HNCA; 3D HN(CO)CA; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D CC(CO) REMARK 210 NH; 3D HCCH-COSY; 3D HCCH-TOCSY; REMARK 210 3D H(CCO)NH; 2D (HB)CB(CGCD)HD; REMARK 210 2D (HB)CB(CGCDCE)HE REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 9.6, TALOS, CCPNMR REMARK 210 ANALYSIS 2.4.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 28 -178.23 -69.78 REMARK 500 1 LEU A 38 176.01 -53.52 REMARK 500 1 SER A 77 -179.71 -174.94 REMARK 500 1 HIS A 80 31.54 -97.52 REMARK 500 1 ARG A 85 -176.21 -61.26 REMARK 500 1 ALA A 97 -75.99 -67.17 REMARK 500 2 PRO A 28 -175.77 -69.79 REMARK 500 2 LEU A 38 -179.52 -55.35 REMARK 500 2 SER A 77 -179.98 -176.32 REMARK 500 2 HIS A 80 32.00 -96.46 REMARK 500 2 ARG A 85 -176.21 -61.10 REMARK 500 2 LYS A 92 103.20 -160.48 REMARK 500 3 LEU A 38 168.28 -49.64 REMARK 500 3 SER A 77 -179.89 -178.17 REMARK 500 3 HIS A 80 33.70 -97.09 REMARK 500 3 ARG A 85 -176.39 -61.28 REMARK 500 3 ALA A 97 -169.11 -60.38 REMARK 500 3 SER A 103 145.19 -174.21 REMARK 500 4 PRO A 28 -175.64 -69.80 REMARK 500 4 LEU A 38 176.76 -53.82 REMARK 500 4 SER A 77 -179.83 -175.01 REMARK 500 4 HIS A 80 31.64 -97.23 REMARK 500 4 ARG A 85 -175.30 -62.06 REMARK 500 4 ALA A 95 111.61 -177.92 REMARK 500 4 SER A 99 93.59 -179.41 REMARK 500 4 LEU A 101 -62.89 -96.03 REMARK 500 4 SER A 103 146.25 -173.07 REMARK 500 5 LEU A 38 173.27 -51.85 REMARK 500 5 HIS A 80 35.63 -97.14 REMARK 500 5 ARG A 85 -175.65 -63.27 REMARK 500 5 ALA A 95 143.58 -175.77 REMARK 500 5 ALA A 97 111.50 66.09 REMARK 500 5 SER A 103 144.69 -171.68 REMARK 500 6 LEU A 38 177.80 -54.24 REMARK 500 6 LEU A 54 145.08 -179.96 REMARK 500 6 SER A 77 -179.79 -175.31 REMARK 500 6 HIS A 80 31.46 -96.01 REMARK 500 6 ARG A 85 -174.81 -63.10 REMARK 500 6 SER A 99 140.41 -179.39 REMARK 500 7 PRO A 28 -173.84 -69.77 REMARK 500 7 LEU A 38 -176.71 -57.13 REMARK 500 7 SER A 77 -179.74 -177.54 REMARK 500 7 HIS A 80 33.02 -97.28 REMARK 500 7 ARG A 85 -175.41 -61.88 REMARK 500 7 ALA A 97 -75.77 -51.52 REMARK 500 7 SER A 99 95.03 -178.17 REMARK 500 7 SER A 103 145.23 -175.00 REMARK 500 8 PRO A 28 -177.68 -69.83 REMARK 500 8 LEU A 38 174.83 -52.97 REMARK 500 8 HIS A 80 34.23 -95.38 REMARK 500 REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36360 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF MONOMERIC SUPEROXIDE DISMUTASE 1 WITH AN REMARK 900 ADDITIONAL MUTATION H46W IN A CROWDED ENVIRONMENT DBREF 7CJW A 1 110 PDB 7CJW 7CJW 1 110 SEQRES 1 A 110 ALA THR LYS ALA VAL ALA VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 110 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 110 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 A 110 GLU GLY LEU HIS GLY PHE TRP VAL HIS GLY ALA GLY GLY SEQRES 5 A 110 ASP LEU GLY ASN VAL THR ALA ASP LYS ASP GLY VAL ALA SEQRES 6 A 110 ASP VAL SER ILE GLU ASP SER VAL ILE SER LEU SER GLY SEQRES 7 A 110 ASP HIS SER ILE ILE GLY ARG THR LEU VAL VAL HIS GLU SEQRES 8 A 110 LYS ALA GLY ALA GLY ALA GLY SER ARG LEU ALA SER GLY SEQRES 9 A 110 VAL ILE GLY ILE ALA GLN SHEET 1 AA1 5 VAL A 64 SER A 68 0 SHEET 2 AA1 5 TRP A 32 LYS A 36 -1 N ILE A 35 O ALA A 65 SHEET 3 AA1 5 ILE A 17 ASN A 19 -1 N ILE A 17 O SER A 34 SHEET 4 AA1 5 ALA A 4 VAL A 7 -1 N ALA A 6 O ILE A 18 SHEET 5 AA1 5 GLY A 107 ILE A 108 -1 O GLY A 107 N VAL A 5 SHEET 1 AA2 2 PHE A 45 HIS A 48 0 SHEET 2 AA2 2 THR A 86 VAL A 89 -1 O THR A 86 N HIS A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1