HEADER RNA BINDING PROTEIN 17-JUL-20 7CKK TITLE STRUCTURAL COMPLEX OF FTO BOUND WITH DAC51 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAT MASS AND OBESITY-ASSOCIATED PROTEIN,U6 SMALL NUCLEAR RNA COMPND 5 (2'-O-METHYLADENOSINE-N(6)-)-DEMETHYLASE FTO,U6 SMALL NUCLEAR RNA COMPND 6 N(6)-METHYLADENOSINE-DEMETHYLASE FTO,MRNA (2'-O-METHYLADENOSINE-N(6)- COMPND 7 )-DEMETHYLASE FTO,M6A(M)-DEMETHYLASE FTO,MRNA N(6)-METHYLADENOSINE COMPND 8 DEMETHYLASE FTO,TRNA N1-METHYL ADENINE DEMETHYLASE FTO; COMPND 9 EC: 1.14.11.-,1.14.11.53; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FTO, KIAA1752; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS INHIBITOR, COMPLEX, DEMETHYLASE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.YANG,J.GAN REVDAT 3 29-NOV-23 7CKK 1 REMARK REVDAT 2 02-FEB-22 7CKK 1 JRNL REVDAT 1 21-JUL-21 7CKK 0 JRNL AUTH Y.LIU,G.LIANG,H.XU,W.DONG,Z.DONG,Z.QIU,Z.ZHANG,F.LI,Y.HUANG, JRNL AUTH 2 Y.LI,J.WU,S.YIN,Y.ZHANG,P.GUO,J.LIU,J.J.XI,P.JIANG,D.HAN, JRNL AUTH 3 C.G.YANG,M.M.XU JRNL TITL TUMORS EXPLOIT FTO-MEDIATED REGULATION OF GLYCOLYTIC JRNL TITL 2 METABOLISM TO EVADE IMMUNE SURVEILLANCE. JRNL REF CELL METAB. V. 33 1221 2021 JRNL REFN ESSN 1932-7420 JRNL PMID 33910046 JRNL DOI 10.1016/J.CMET.2021.04.001 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 22821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1250 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1056 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.339 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.242 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3480 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3193 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4733 ; 1.318 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7299 ; 0.912 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 419 ; 6.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;35.350 ;24.036 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;14.666 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.496 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3949 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 827 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9735 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26488 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 1.16200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QKN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE (PH 5.8), 12 % REMARK 280 (W/V) POLYETHYLENE GLYCOL 3350, 8 % ISOPROPANOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.06200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.02766 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.17967 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 71.06200 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 41.02766 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.17967 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 71.06200 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 41.02766 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.17967 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.05533 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 56.35933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 82.05533 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 56.35933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 82.05533 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 56.35933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 123 REMARK 465 ASN A 124 REMARK 465 ILE A 125 REMARK 465 LYS A 126 REMARK 465 HIS A 127 REMARK 465 THR A 128 REMARK 465 LYS A 162 REMARK 465 ALA A 163 REMARK 465 ASN A 164 REMARK 465 GLU A 165 REMARK 465 ASP A 166 REMARK 465 ALA A 167 REMARK 465 VAL A 168 REMARK 465 PRO A 169 REMARK 465 LEU A 170 REMARK 465 CYS A 171 REMARK 465 MET A 172 REMARK 465 SER A 173 REMARK 465 ALA A 174 REMARK 465 ASP A 175 REMARK 465 PHE A 176 REMARK 465 PRO A 177 REMARK 465 ARG A 178 REMARK 465 VAL A 179 REMARK 465 GLY A 180 REMARK 465 MET A 181 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 TYR A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 GLN A 188 REMARK 465 GLU A 250 REMARK 465 GLY A 251 REMARK 465 PRO A 252 REMARK 465 GLU A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 SER A 256 REMARK 465 GLU A 257 REMARK 465 ASP A 258 REMARK 465 ASP A 259 REMARK 465 SER A 260 REMARK 465 HIS A 261 REMARK 465 LEU A 262 REMARK 465 PRO A 465 REMARK 465 ALA A 466 REMARK 465 ASP A 467 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 44 CG CD1 CD2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 ASP A 353 CG OD1 OD2 REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 ASN A 387 CG OD1 ND2 REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 SER A 458 OG REMARK 470 ARG A 459 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 462 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 464 CG CD1 CD2 REMARK 470 GLN A 468 CG CD OE1 NE2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 LYS A 478 CG CD CE NZ REMARK 470 ASP A 479 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 239 18.72 58.23 REMARK 500 TRP A 278 -6.71 72.14 REMARK 500 GLN A 291 104.04 -41.73 REMARK 500 ASP A 299 -125.72 59.78 REMARK 500 TRP A 378 -66.59 -122.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 115 VAL A 116 148.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 771 DISTANCE = 5.81 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B6C A 602 DBREF 7CKK A 32 500 UNP Q9C0B1 FTO_HUMAN 32 500 SEQADV 7CKK GLY A 28 UNP Q9C0B1 EXPRESSION TAG SEQADV 7CKK SER A 29 UNP Q9C0B1 EXPRESSION TAG SEQADV 7CKK HIS A 30 UNP Q9C0B1 EXPRESSION TAG SEQADV 7CKK MET A 31 UNP Q9C0B1 EXPRESSION TAG SEQADV 7CKK LEU A 45 UNP Q9C0B1 LYS 45 ENGINEERED MUTATION SEQRES 1 A 473 GLY SER HIS MET THR PRO LYS ASP ASP GLU PHE TYR GLN SEQRES 2 A 473 GLN TRP GLN LEU LEU TYR PRO LYS LEU ILE LEU ARG GLU SEQRES 3 A 473 ALA SER SER VAL SER GLU GLU LEU HIS LYS GLU VAL GLN SEQRES 4 A 473 GLU ALA PHE LEU THR LEU HIS LYS HIS GLY CYS LEU PHE SEQRES 5 A 473 ARG ASP LEU VAL ARG ILE GLN GLY LYS ASP LEU LEU THR SEQRES 6 A 473 PRO VAL SER ARG ILE LEU ILE GLY ASN PRO GLY CYS THR SEQRES 7 A 473 TYR LYS TYR LEU ASN THR ARG LEU PHE THR VAL PRO TRP SEQRES 8 A 473 PRO VAL LYS GLY SER ASN ILE LYS HIS THR GLU ALA GLU SEQRES 9 A 473 ILE ALA ALA ALA CYS GLU THR PHE LEU LYS LEU ASN ASP SEQRES 10 A 473 TYR LEU GLN ILE GLU THR ILE GLN ALA LEU GLU GLU LEU SEQRES 11 A 473 ALA ALA LYS GLU LYS ALA ASN GLU ASP ALA VAL PRO LEU SEQRES 12 A 473 CYS MET SER ALA ASP PHE PRO ARG VAL GLY MET GLY SER SEQRES 13 A 473 SER TYR ASN GLY GLN ASP GLU VAL ASP ILE LYS SER ARG SEQRES 14 A 473 ALA ALA TYR ASN VAL THR LEU LEU ASN PHE MET ASP PRO SEQRES 15 A 473 GLN LYS MET PRO TYR LEU LYS GLU GLU PRO TYR PHE GLY SEQRES 16 A 473 MET GLY LYS MET ALA VAL SER TRP HIS HIS ASP GLU ASN SEQRES 17 A 473 LEU VAL ASP ARG SER ALA VAL ALA VAL TYR SER TYR SER SEQRES 18 A 473 CYS GLU GLY PRO GLU GLU GLU SER GLU ASP ASP SER HIS SEQRES 19 A 473 LEU GLU GLY ARG ASP PRO ASP ILE TRP HIS VAL GLY PHE SEQRES 20 A 473 LYS ILE SER TRP ASP ILE GLU THR PRO GLY LEU ALA ILE SEQRES 21 A 473 PRO LEU HIS GLN GLY ASP CYS TYR PHE MET LEU ASP ASP SEQRES 22 A 473 LEU ASN ALA THR HIS GLN HIS CYS VAL LEU ALA GLY SER SEQRES 23 A 473 GLN PRO ARG PHE SER SER THR HIS ARG VAL ALA GLU CYS SEQRES 24 A 473 SER THR GLY THR LEU ASP TYR ILE LEU GLN ARG CYS GLN SEQRES 25 A 473 LEU ALA LEU GLN ASN VAL CYS ASP ASP VAL ASP ASN ASP SEQRES 26 A 473 ASP VAL SER LEU LYS SER PHE GLU PRO ALA VAL LEU LYS SEQRES 27 A 473 GLN GLY GLU GLU ILE HIS ASN GLU VAL GLU PHE GLU TRP SEQRES 28 A 473 LEU ARG GLN PHE TRP PHE GLN GLY ASN ARG TYR ARG LYS SEQRES 29 A 473 CYS THR ASP TRP TRP CYS GLN PRO MET ALA GLN LEU GLU SEQRES 30 A 473 ALA LEU TRP LYS LYS MET GLU GLY VAL THR ASN ALA VAL SEQRES 31 A 473 LEU HIS GLU VAL LYS ARG GLU GLY LEU PRO VAL GLU GLN SEQRES 32 A 473 ARG ASN GLU ILE LEU THR ALA ILE LEU ALA SER LEU THR SEQRES 33 A 473 ALA ARG GLN ASN LEU ARG ARG GLU TRP HIS ALA ARG CYS SEQRES 34 A 473 GLN SER ARG ILE ALA ARG THR LEU PRO ALA ASP GLN LYS SEQRES 35 A 473 PRO GLU CYS ARG PRO TYR TRP GLU LYS ASP ASP ALA SER SEQRES 36 A 473 MET PRO LEU PRO PHE ASP LEU THR ASP ILE VAL SER GLU SEQRES 37 A 473 LEU ARG GLY GLN LEU HET OGA A 601 10 HET B6C A 602 26 HETNAM OGA N-OXALYLGLYCINE HETNAM B6C 2-{[2,6-DICHLORO-4-(3,5-DIMETHYL-1H-PYRAZOL-4-YL) HETNAM 2 B6C PHENYL]AMINO}-N-HYDROXYBENZAMIDE FORMUL 2 OGA C4 H5 N O5 FORMUL 3 B6C C18 H16 CL2 N4 O2 FORMUL 4 HOH *71(H2 O) HELIX 1 AA1 GLU A 37 TYR A 46 1 10 HELIX 2 AA2 GLU A 53 VAL A 57 5 5 HELIX 3 AA3 SER A 58 HIS A 75 1 18 HELIX 4 AA4 ALA A 130 GLU A 161 1 32 HELIX 5 AA5 GLU A 190 ALA A 197 1 8 HELIX 6 AA6 ASP A 208 MET A 212 5 5 HELIX 7 AA7 ASP A 300 THR A 304 1 5 HELIX 8 AA8 THR A 330 LEU A 342 1 13 HELIX 9 AA9 GLN A 343 VAL A 345 5 3 HELIX 10 AB1 GLU A 360 TRP A 378 1 19 HELIX 11 AB2 TRP A 378 PHE A 384 1 7 HELIX 12 AB3 ASN A 387 THR A 393 1 7 HELIX 13 AB4 TRP A 396 LYS A 422 1 27 HELIX 14 AB5 PRO A 427 CYS A 456 1 30 HELIX 15 AB6 SER A 458 THR A 463 1 6 HELIX 16 AB7 LEU A 489 LEU A 500 1 12 SHEET 1 AA1 6 HIS A 30 MET A 31 0 SHEET 2 AA1 6 GLY A 284 LEU A 289 1 O GLY A 284 N MET A 31 SHEET 3 AA1 6 TRP A 270 ILE A 276 -1 N TRP A 270 O LEU A 289 SHEET 4 AA1 6 HIS A 305 LEU A 310 -1 O LEU A 310 N HIS A 271 SHEET 5 AA1 6 LYS A 225 HIS A 231 -1 N HIS A 231 O HIS A 307 SHEET 6 AA1 6 LYS A 216 GLU A 217 -1 N LYS A 216 O MET A 226 SHEET 1 AA2 7 LEU A 49 ARG A 52 0 SHEET 2 AA2 7 CYS A 294 MET A 297 -1 O CYS A 294 N ARG A 52 SHEET 3 AA2 7 VAL A 242 SER A 248 -1 N VAL A 242 O MET A 297 SHEET 4 AA2 7 ARG A 316 ARG A 322 -1 O HIS A 321 N ALA A 243 SHEET 5 AA2 7 VAL A 201 MET A 207 -1 N ASN A 205 O SER A 318 SHEET 6 AA2 7 SER A 95 GLY A 100 -1 N SER A 95 O PHE A 206 SHEET 7 AA2 7 VAL A 116 PRO A 117 1 O VAL A 116 N LEU A 98 SHEET 1 AA3 2 LEU A 82 ILE A 85 0 SHEET 2 AA3 2 LYS A 88 LEU A 91 -1 O LEU A 90 N VAL A 83 SHEET 1 AA4 2 THR A 105 TYR A 108 0 SHEET 2 AA4 2 THR A 111 PHE A 114 -1 O LEU A 113 N TYR A 106 CISPEP 1 ARG A 473 PRO A 474 0 -1.88 SITE 1 AC1 8 HIS A 231 ASP A 233 TYR A 295 HIS A 307 SITE 2 AC1 8 ARG A 316 SER A 318 THR A 320 ARG A 322 SITE 1 AC2 9 PRO A 93 ARG A 96 TYR A 106 TYR A 108 SITE 2 AC2 9 VAL A 228 SER A 229 HIS A 231 HIS A 232 SITE 3 AC2 9 GLU A 234 CRYST1 142.124 142.124 84.539 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007036 0.004062 0.000000 0.00000 SCALE2 0.000000 0.008125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011829 0.00000