HEADER TRANSFERASE 20-JUL-20 7CL1 TITLE HUMAN SIRT6 IN COMPLEX WITH ALLOSTERIC ACTIVATOR MDL-801 (3.2A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 6,SIR2-LIKE PROTEIN 6; COMPND 5 EC: 2.3.1.286; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: THR-ALA-ARG-LYS-SER-THR-GLY-GLY; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT6, SIR2L6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEACYLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SONG,J.ZHANG REVDAT 3 12-MAY-21 7CL1 1 JRNL REVDAT 2 24-MAR-21 7CL1 1 JRNL REVDAT 1 24-FEB-21 7CL1 0 JRNL AUTH Z.HUANG,J.ZHAO,W.DENG,Y.CHEN,J.SHANG,K.SONG,L.ZHANG,C.WANG, JRNL AUTH 2 S.LU,X.YANG,B.HE,J.MIN,H.HU,M.TAN,J.XU,Q.ZHANG,J.ZHONG, JRNL AUTH 3 X.SUN,Z.MAO,H.LIN,M.XIAO,Y.E.CHIN,H.JIANG,H.SHEN,Y.XU, JRNL AUTH 4 G.CHEN,J.ZHANG JRNL TITL REPLY TO: BINDING SITE FOR MDL-801 ON SIRT6. JRNL REF NAT.CHEM.BIOL. V. 17 522 2021 JRNL REFN ESSN 1552-4469 JRNL PMID 33649600 JRNL DOI 10.1038/S41589-021-00750-5 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 115.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 666 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2361 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.644 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.328 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2542 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2450 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3439 ; 1.519 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5638 ; 1.219 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 6.692 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;34.413 ;22.115 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 413 ;16.100 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.294 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 378 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2744 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 557 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12720 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 115.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M (NH4)2SO4, 0.1 M MES PH 6.5, 20% REMARK 280 W/V PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 81.40350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.40350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.40350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.40350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 81.40350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.40350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 81.40350 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 81.40350 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 81.40350 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 81.40350 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 81.40350 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 81.40350 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 81.40350 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 81.40350 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 81.40350 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 81.40350 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 81.40350 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 81.40350 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 122.10525 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 40.70175 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 40.70175 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 122.10525 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 122.10525 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 122.10525 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 40.70175 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 40.70175 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 122.10525 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 40.70175 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 122.10525 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 40.70175 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 122.10525 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 40.70175 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 40.70175 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 40.70175 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 122.10525 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 40.70175 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 122.10525 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 122.10525 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 122.10525 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 40.70175 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 40.70175 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 122.10525 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 122.10525 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 40.70175 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 40.70175 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 40.70175 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 40.70175 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 122.10525 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 40.70175 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 122.10525 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 40.70175 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 122.10525 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 122.10525 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 122.10525 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 VAL A 1 REMARK 465 LYS A 298 REMARK 465 GLU A 299 REMARK 465 GLU A 300 REMARK 465 SER A 301 REMARK 465 PRO A 302 REMARK 465 THR A 303 REMARK 465 ARG A 304 REMARK 465 ILE A 305 REMARK 465 ASN A 306 REMARK 465 GLY A 307 REMARK 465 SER A 308 REMARK 465 ILE A 309 REMARK 465 PRO A 310 REMARK 465 ALA A 311 REMARK 465 GLY A 312 REMARK 465 PRO A 313 REMARK 465 LYS A 314 REMARK 465 GLN A 315 REMARK 465 GLU A 316 REMARK 465 PRO A 317 REMARK 465 CYS A 318 REMARK 465 ALA A 319 REMARK 465 GLN A 320 REMARK 465 HIS A 321 REMARK 465 ASN A 322 REMARK 465 GLY A 323 REMARK 465 SER A 324 REMARK 465 GLU A 325 REMARK 465 PRO A 326 REMARK 465 ALA A 327 REMARK 465 SER A 328 REMARK 465 PRO A 329 REMARK 465 LYS A 330 REMARK 465 ARG A 331 REMARK 465 GLU A 332 REMARK 465 ARG A 333 REMARK 465 PRO A 334 REMARK 465 THR A 335 REMARK 465 SER A 336 REMARK 465 PRO A 337 REMARK 465 ALA A 338 REMARK 465 PRO A 339 REMARK 465 HIS A 340 REMARK 465 ARG A 341 REMARK 465 PRO A 342 REMARK 465 PRO A 343 REMARK 465 LYS A 344 REMARK 465 ARG A 345 REMARK 465 VAL A 346 REMARK 465 LYS A 347 REMARK 465 ALA A 348 REMARK 465 LYS A 349 REMARK 465 ALA A 350 REMARK 465 VAL A 351 REMARK 465 PRO A 352 REMARK 465 SER A 353 REMARK 465 GLN C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 5 CAO G4X C 101 2.08 REMARK 500 NZ LYS C 5 SAQ G4X C 101 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 5 8.43 -69.01 REMARK 500 HIS A 253 77.82 -112.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 3 ALA A 4 149.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 139 SG REMARK 620 2 CYS A 142 SG 99.7 REMARK 620 3 CYS A 164 SG 106.4 102.0 REMARK 620 4 CYS A 175 SG 113.7 120.1 113.2 REMARK 620 N 1 2 3 DBREF 7CL1 A -1 353 UNP Q8N6T7 SIR6_HUMAN 1 355 DBREF 7CL1 C 1 9 PDB 7CL1 7CL1 1 9 SEQRES 1 A 355 MET SER VAL ASN TYR ALA ALA GLY LEU SER PRO TYR ALA SEQRES 2 A 355 ASP LYS GLY LYS CYS GLY LEU PRO GLU ILE PHE ASP PRO SEQRES 3 A 355 PRO GLU GLU LEU GLU ARG LYS VAL TRP GLU LEU ALA ARG SEQRES 4 A 355 LEU VAL TRP GLN SER SER SER VAL VAL PHE HIS THR GLY SEQRES 5 A 355 ALA GLY ILE SER THR ALA SER GLY ILE PRO ASP PHE ARG SEQRES 6 A 355 GLY PRO HIS GLY VAL TRP THR MET GLU GLU ARG GLY LEU SEQRES 7 A 355 ALA PRO LYS PHE ASP THR THR PHE GLU SER ALA ARG PRO SEQRES 8 A 355 THR GLN THR HIS MET ALA LEU VAL GLN LEU GLU ARG VAL SEQRES 9 A 355 GLY LEU LEU ARG PHE LEU VAL SER GLN ASN VAL ASP GLY SEQRES 10 A 355 LEU HIS VAL ARG SER GLY PHE PRO ARG ASP LYS LEU ALA SEQRES 11 A 355 GLU LEU HIS GLY ASN MET PHE VAL GLU GLU CYS ALA LYS SEQRES 12 A 355 CYS LYS THR GLN TYR VAL ARG ASP THR VAL VAL GLY THR SEQRES 13 A 355 MET GLY LEU LYS ALA THR GLY ARG LEU CYS THR VAL ALA SEQRES 14 A 355 LYS ALA ARG GLY LEU ARG ALA CYS ARG GLY GLU LEU ARG SEQRES 15 A 355 ASP THR ILE LEU ASP TRP GLU ASP SER LEU PRO ASP ARG SEQRES 16 A 355 ASP LEU ALA LEU ALA ASP GLU ALA SER ARG ASN ALA ASP SEQRES 17 A 355 LEU SER ILE THR LEU GLY THR SER LEU GLN ILE ARG PRO SEQRES 18 A 355 SER GLY ASN LEU PRO LEU ALA THR LYS ARG ARG GLY GLY SEQRES 19 A 355 ARG LEU VAL ILE VAL ASN LEU GLN PRO THR LYS HIS ASP SEQRES 20 A 355 ARG HIS ALA ASP LEU ARG ILE HIS GLY TYR VAL ASP GLU SEQRES 21 A 355 VAL MET THR ARG LEU MET LYS HIS LEU GLY LEU GLU ILE SEQRES 22 A 355 PRO ALA TRP ASP GLY PRO ARG VAL LEU GLU ARG ALA LEU SEQRES 23 A 355 PRO PRO LEU PRO ARG PRO PRO THR PRO LYS LEU GLU PRO SEQRES 24 A 355 LYS GLU GLU SER PRO THR ARG ILE ASN GLY SER ILE PRO SEQRES 25 A 355 ALA GLY PRO LYS GLN GLU PRO CYS ALA GLN HIS ASN GLY SEQRES 26 A 355 SER GLU PRO ALA SER PRO LYS ARG GLU ARG PRO THR SER SEQRES 27 A 355 PRO ALA PRO HIS ARG PRO PRO LYS ARG VAL LYS ALA LYS SEQRES 28 A 355 ALA VAL PRO SER SEQRES 1 C 9 GLN THR ALA ARG LYS SER THR GLY GLY HET AR6 A 401 36 HET ZN A 402 1 HET 8L9 A 403 34 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET SO4 A 408 5 HET PEG A 409 7 HET G4X C 101 17 HET SO4 C 102 5 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM ZN ZINC ION HETNAM 8L9 5-[[3,5-BIS(CHLORANYL)PHENYL]SULFONYLAMINO]-2-[(5- HETNAM 2 8L9 BROMANYL-4-FLUORANYL-2-METHYL-PHENYL)SULFAMOYL]BENZOIC HETNAM 3 8L9 ACID HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM G4X HEXADECANETHIAL HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 AR6 C15 H23 N5 O14 P2 FORMUL 4 ZN ZN 2+ FORMUL 5 8L9 C20 H14 BR CL2 F N2 O6 S2 FORMUL 6 GOL 4(C3 H8 O3) FORMUL 10 SO4 2(O4 S 2-) FORMUL 11 PEG C4 H10 O3 FORMUL 12 G4X C16 H32 S FORMUL 14 HOH *38(H2 O) HELIX 1 AA1 ASN A 2 GLY A 6 5 5 HELIX 2 AA2 PRO A 24 SER A 42 1 19 HELIX 3 AA3 ALA A 51 SER A 54 5 4 HELIX 4 AA4 GLY A 67 ARG A 74 1 8 HELIX 5 AA5 THR A 90 VAL A 102 1 13 HELIX 6 AA6 GLY A 115 GLY A 121 1 7 HELIX 7 AA7 PRO A 123 ASP A 125 5 3 HELIX 8 AA8 PRO A 191 ALA A 205 1 15 HELIX 9 AA9 PRO A 219 GLY A 221 5 3 HELIX 10 AB1 ASN A 222 ARG A 230 1 9 HELIX 11 AB2 HIS A 244 ALA A 248 5 5 HELIX 12 AB3 TYR A 255 LEU A 267 1 13 SHEET 1 AA1 6 LEU A 127 GLU A 129 0 SHEET 2 AA1 6 PHE A 107 SER A 110 1 N SER A 110 O ALA A 128 SHEET 3 AA1 6 VAL A 45 THR A 49 1 N PHE A 47 O VAL A 109 SHEET 4 AA1 6 LEU A 207 LEU A 211 1 O LEU A 211 N HIS A 48 SHEET 5 AA1 6 ARG A 233 VAL A 237 1 O VAL A 237 N THR A 210 SHEET 6 AA1 6 LEU A 250 ILE A 252 1 O ILE A 252 N ILE A 236 SHEET 1 AA2 4 GLN A 145 VAL A 147 0 SHEET 2 AA2 4 VAL A 136 CYS A 139 -1 N GLU A 137 O TYR A 146 SHEET 3 AA2 4 GLU A 178 ASP A 181 -1 O ARG A 180 N GLU A 138 SHEET 4 AA2 4 ALA A 159 LEU A 163 -1 N THR A 160 O LEU A 179 LINK NZ LYS C 5 CAP G4X C 101 1555 1555 1.26 LINK SG CYS A 139 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 142 ZN ZN A 402 1555 1555 2.30 LINK SG CYS A 164 ZN ZN A 402 1555 1555 2.33 LINK SG CYS A 175 ZN ZN A 402 1555 1555 2.35 CISPEP 1 ARG A 218 PRO A 219 0 -5.79 CRYST1 162.807 162.807 162.807 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006142 0.00000