HEADER HYDROLASE 24-JUL-20 7CM2 TITLE THE CRYSTAL STRUCTURE OF HUMAN USP7 USP DOMAIN FROM BIORTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 208-560; COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME 7,HERPESVIRUS-ASSOCIATED UBIQUITIN- COMPND 6 SPECIFIC PROTEASE,UBIQUITIN THIOESTERASE 7,UBIQUITIN-SPECIFIC- COMPND 7 PROCESSING PROTEASE 7; COMPND 8 EC: 3.4.19.12; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP7, HAUSP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYSTEINE PROTEINASES, UBIQUITIN CARBOXYL-TERMINAL HYDROLASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.WANG,W.CHENG,Z.LV,D.LIN,B.ZHU,Q.MIAO,X.BAO,H.SHANG REVDAT 3 29-NOV-23 7CM2 1 REMARK REVDAT 2 09-FEB-22 7CM2 1 TITLE JRNL REVDAT 1 05-AUG-20 7CM2 0 JRNL AUTH F.WANG,W.CHENG,Z.LV,D.LIN,B.ZHU,Q.MIAO,X.BAO,H.SHANG JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN USP7 USP DOMAIN FROM BIORTUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 37690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.834 REMARK 3 FREE R VALUE TEST SET COUNT : 1822 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2647 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20200 REMARK 3 B22 (A**2) : 3.45000 REMARK 3 B33 (A**2) : -2.40800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.00800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.305 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5663 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5181 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7620 ; 1.177 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12096 ; 1.081 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 6.555 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 315 ;34.744 ;23.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1037 ;14.350 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;14.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 692 ; 0.043 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6246 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1128 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 918 ; 0.173 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 41 ; 0.124 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2567 ; 0.151 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 236 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2708 ; 1.736 ; 4.722 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2707 ; 1.736 ; 4.721 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3378 ; 3.022 ; 7.069 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3379 ; 3.021 ; 7.071 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2955 ; 1.589 ; 4.936 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2956 ; 1.588 ; 4.937 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4242 ; 2.752 ; 7.298 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4243 ; 2.752 ; 7.299 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7CM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37704 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 19.685 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.5, 25% PEG3,350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.56550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 191 REMARK 465 GLY A 192 REMARK 465 GLY A 193 REMARK 465 SER A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 GLU A 201 REMARK 465 ASN A 202 REMARK 465 LEU A 203 REMARK 465 TYR A 204 REMARK 465 PHE A 205 REMARK 465 GLN A 206 REMARK 465 GLY A 207 REMARK 465 ASP A 412 REMARK 465 PRO A 413 REMARK 465 ASP A 502 REMARK 465 ASP A 503 REMARK 465 ASP A 504 REMARK 465 LEU A 505 REMARK 465 SER A 506 REMARK 465 VAL A 507 REMARK 465 ARG A 508 REMARK 465 HIS A 509 REMARK 465 ARG A 555 REMARK 465 LYS A 556 REMARK 465 GLU A 557 REMARK 465 ARG A 558 REMARK 465 GLN A 559 REMARK 465 GLU A 560 REMARK 465 MET B 191 REMARK 465 GLY B 192 REMARK 465 GLY B 193 REMARK 465 SER B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 GLU B 201 REMARK 465 ASN B 202 REMARK 465 LEU B 203 REMARK 465 TYR B 204 REMARK 465 PHE B 205 REMARK 465 GLN B 206 REMARK 465 GLY B 207 REMARK 465 ASP B 502 REMARK 465 ASP B 503 REMARK 465 ASP B 504 REMARK 465 LEU B 505 REMARK 465 SER B 506 REMARK 465 VAL B 507 REMARK 465 ARG B 508 REMARK 465 ARG B 555 REMARK 465 LYS B 556 REMARK 465 GLU B 557 REMARK 465 ARG B 558 REMARK 465 GLN B 559 REMARK 465 GLU B 560 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 417 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 223 -110.43 53.52 REMARK 500 ASP A 380 98.11 -68.31 REMARK 500 THR A 415 -13.04 85.75 REMARK 500 ASP A 482 -109.41 54.42 REMARK 500 ILE A 494 -82.06 -103.77 REMARK 500 LEU A 528 31.85 -96.29 REMARK 500 LYS B 209 -102.60 -96.08 REMARK 500 CYS B 223 -109.27 56.86 REMARK 500 ASN B 460 -103.09 68.08 REMARK 500 ASP B 481 79.51 -116.88 REMARK 500 ASP B 482 -110.09 49.60 REMARK 500 ILE B 494 -83.39 -108.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 817 DISTANCE = 6.23 ANGSTROMS DBREF 7CM2 A 208 560 UNP Q93009 UBP7_HUMAN 208 560 DBREF 7CM2 B 208 560 UNP Q93009 UBP7_HUMAN 208 560 SEQADV 7CM2 MET A 191 UNP Q93009 INITIATING METHIONINE SEQADV 7CM2 GLY A 192 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 GLY A 193 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 SER A 194 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS A 195 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS A 196 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS A 197 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS A 198 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS A 199 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS A 200 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 GLU A 201 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 ASN A 202 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 LEU A 203 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 TYR A 204 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 PHE A 205 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 GLN A 206 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 GLY A 207 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 MET B 191 UNP Q93009 INITIATING METHIONINE SEQADV 7CM2 GLY B 192 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 GLY B 193 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 SER B 194 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS B 195 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS B 196 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS B 197 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS B 198 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS B 199 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 HIS B 200 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 GLU B 201 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 ASN B 202 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 LEU B 203 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 TYR B 204 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 PHE B 205 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 GLN B 206 UNP Q93009 EXPRESSION TAG SEQADV 7CM2 GLY B 207 UNP Q93009 EXPRESSION TAG SEQRES 1 A 370 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 A 370 TYR PHE GLN GLY LYS LYS HIS THR GLY TYR VAL GLY LEU SEQRES 3 A 370 LYS ASN GLN GLY ALA THR CYS TYR MET ASN SER LEU LEU SEQRES 4 A 370 GLN THR LEU PHE PHE THR ASN GLN LEU ARG LYS ALA VAL SEQRES 5 A 370 TYR MET MET PRO THR GLU GLY ASP ASP SER SER LYS SER SEQRES 6 A 370 VAL PRO LEU ALA LEU GLN ARG VAL PHE TYR GLU LEU GLN SEQRES 7 A 370 HIS SER ASP LYS PRO VAL GLY THR LYS LYS LEU THR LYS SEQRES 8 A 370 SER PHE GLY TRP GLU THR LEU ASP SER PHE MET GLN HIS SEQRES 9 A 370 ASP VAL GLN GLU LEU CYS ARG VAL LEU LEU ASP ASN VAL SEQRES 10 A 370 GLU ASN LYS MET LYS GLY THR CYS VAL GLU GLY THR ILE SEQRES 11 A 370 PRO LYS LEU PHE ARG GLY LYS MET VAL SER TYR ILE GLN SEQRES 12 A 370 CYS LYS GLU VAL ASP TYR ARG SER ASP ARG ARG GLU ASP SEQRES 13 A 370 TYR TYR ASP ILE GLN LEU SER ILE LYS GLY LYS LYS ASN SEQRES 14 A 370 ILE PHE GLU SER PHE VAL ASP TYR VAL ALA VAL GLU GLN SEQRES 15 A 370 LEU ASP GLY ASP ASN LYS TYR ASP ALA GLY GLU HIS GLY SEQRES 16 A 370 LEU GLN GLU ALA GLU LYS GLY VAL LYS PHE LEU THR LEU SEQRES 17 A 370 PRO PRO VAL LEU HIS LEU GLN LEU MET ARG PHE MET TYR SEQRES 18 A 370 ASP PRO GLN THR ASP GLN ASN ILE LYS ILE ASN ASP ARG SEQRES 19 A 370 PHE GLU PHE PRO GLU GLN LEU PRO LEU ASP GLU PHE LEU SEQRES 20 A 370 GLN LYS THR ASP PRO LYS ASP PRO ALA ASN TYR ILE LEU SEQRES 21 A 370 HIS ALA VAL LEU VAL HIS SER GLY ASP ASN HIS GLY GLY SEQRES 22 A 370 HIS TYR VAL VAL TYR LEU ASN PRO LYS GLY ASP GLY LYS SEQRES 23 A 370 TRP CYS LYS PHE ASP ASP ASP VAL VAL SER ARG CYS THR SEQRES 24 A 370 LYS GLU GLU ALA ILE GLU HIS ASN TYR GLY GLY HIS ASP SEQRES 25 A 370 ASP ASP LEU SER VAL ARG HIS CYS THR ASN ALA TYR MET SEQRES 26 A 370 LEU VAL TYR ILE ARG GLU SER LYS LEU SER GLU VAL LEU SEQRES 27 A 370 GLN ALA VAL THR ASP HIS ASP ILE PRO GLN GLN LEU VAL SEQRES 28 A 370 GLU ARG LEU GLN GLU GLU LYS ARG ILE GLU ALA GLN LYS SEQRES 29 A 370 ARG LYS GLU ARG GLN GLU SEQRES 1 B 370 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 B 370 TYR PHE GLN GLY LYS LYS HIS THR GLY TYR VAL GLY LEU SEQRES 3 B 370 LYS ASN GLN GLY ALA THR CYS TYR MET ASN SER LEU LEU SEQRES 4 B 370 GLN THR LEU PHE PHE THR ASN GLN LEU ARG LYS ALA VAL SEQRES 5 B 370 TYR MET MET PRO THR GLU GLY ASP ASP SER SER LYS SER SEQRES 6 B 370 VAL PRO LEU ALA LEU GLN ARG VAL PHE TYR GLU LEU GLN SEQRES 7 B 370 HIS SER ASP LYS PRO VAL GLY THR LYS LYS LEU THR LYS SEQRES 8 B 370 SER PHE GLY TRP GLU THR LEU ASP SER PHE MET GLN HIS SEQRES 9 B 370 ASP VAL GLN GLU LEU CYS ARG VAL LEU LEU ASP ASN VAL SEQRES 10 B 370 GLU ASN LYS MET LYS GLY THR CYS VAL GLU GLY THR ILE SEQRES 11 B 370 PRO LYS LEU PHE ARG GLY LYS MET VAL SER TYR ILE GLN SEQRES 12 B 370 CYS LYS GLU VAL ASP TYR ARG SER ASP ARG ARG GLU ASP SEQRES 13 B 370 TYR TYR ASP ILE GLN LEU SER ILE LYS GLY LYS LYS ASN SEQRES 14 B 370 ILE PHE GLU SER PHE VAL ASP TYR VAL ALA VAL GLU GLN SEQRES 15 B 370 LEU ASP GLY ASP ASN LYS TYR ASP ALA GLY GLU HIS GLY SEQRES 16 B 370 LEU GLN GLU ALA GLU LYS GLY VAL LYS PHE LEU THR LEU SEQRES 17 B 370 PRO PRO VAL LEU HIS LEU GLN LEU MET ARG PHE MET TYR SEQRES 18 B 370 ASP PRO GLN THR ASP GLN ASN ILE LYS ILE ASN ASP ARG SEQRES 19 B 370 PHE GLU PHE PRO GLU GLN LEU PRO LEU ASP GLU PHE LEU SEQRES 20 B 370 GLN LYS THR ASP PRO LYS ASP PRO ALA ASN TYR ILE LEU SEQRES 21 B 370 HIS ALA VAL LEU VAL HIS SER GLY ASP ASN HIS GLY GLY SEQRES 22 B 370 HIS TYR VAL VAL TYR LEU ASN PRO LYS GLY ASP GLY LYS SEQRES 23 B 370 TRP CYS LYS PHE ASP ASP ASP VAL VAL SER ARG CYS THR SEQRES 24 B 370 LYS GLU GLU ALA ILE GLU HIS ASN TYR GLY GLY HIS ASP SEQRES 25 B 370 ASP ASP LEU SER VAL ARG HIS CYS THR ASN ALA TYR MET SEQRES 26 B 370 LEU VAL TYR ILE ARG GLU SER LYS LEU SER GLU VAL LEU SEQRES 27 B 370 GLN ALA VAL THR ASP HIS ASP ILE PRO GLN GLN LEU VAL SEQRES 28 B 370 GLU ARG LEU GLN GLU GLU LYS ARG ILE GLU ALA GLN LYS SEQRES 29 B 370 ARG LYS GLU ARG GLN GLU HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL B 601 6 HET GOL B 602 6 HET GOL B 603 6 HET GOL B 604 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 8(C3 H8 O3) FORMUL 11 HOH *252(H2 O) HELIX 1 AA1 TYR A 224 PHE A 234 1 11 HELIX 2 AA2 THR A 235 MET A 244 1 10 HELIX 3 AA3 SER A 255 SER A 270 1 16 HELIX 4 AA4 THR A 276 GLY A 284 1 9 HELIX 5 AA5 SER A 290 HIS A 294 5 5 HELIX 6 AA6 ASP A 295 MET A 311 1 17 HELIX 7 AA7 GLY A 318 ARG A 325 1 8 HELIX 8 AA8 ASN A 359 VAL A 368 1 10 HELIX 9 AA9 ASP A 374 LYS A 378 5 5 HELIX 10 AB1 GLY A 382 HIS A 384 5 3 HELIX 11 AB2 ASP A 434 LEU A 437 5 4 HELIX 12 AB3 THR A 489 ILE A 494 1 6 HELIX 13 AB4 GLU A 495 TYR A 498 5 4 HELIX 14 AB5 LYS A 523 LEU A 528 1 6 HELIX 15 AB6 THR A 532 ILE A 536 5 5 HELIX 16 AB7 PRO A 537 ALA A 552 1 16 HELIX 17 AB8 TYR B 224 PHE B 234 1 11 HELIX 18 AB9 THR B 235 MET B 245 1 11 HELIX 19 AC1 SER B 255 SER B 270 1 16 HELIX 20 AC2 THR B 276 PHE B 283 1 8 HELIX 21 AC3 ASP B 295 LYS B 312 1 18 HELIX 22 AC4 GLY B 318 ARG B 325 1 8 HELIX 23 AC5 ASN B 359 VAL B 368 1 10 HELIX 24 AC6 ASP B 374 LYS B 378 5 5 HELIX 25 AC7 GLY B 382 HIS B 384 5 3 HELIX 26 AC8 ASP B 434 LEU B 437 5 4 HELIX 27 AC9 THR B 489 ILE B 494 1 6 HELIX 28 AD1 GLU B 495 TYR B 498 5 4 HELIX 29 AD2 LYS B 523 LEU B 528 1 6 HELIX 30 AD3 THR B 532 ILE B 536 5 5 HELIX 31 AD4 PRO B 537 LYS B 554 1 18 SHEET 1 AA1 4 ARG A 340 TYR A 347 0 SHEET 2 AA1 4 GLY A 326 CYS A 334 -1 N MET A 328 O GLU A 345 SHEET 3 AA1 4 ALA A 389 THR A 397 -1 O GLU A 390 N GLN A 333 SHEET 4 AA1 4 GLU A 371 LEU A 373 -1 N GLU A 371 O LYS A 391 SHEET 1 AA2 5 ILE A 350 LEU A 352 0 SHEET 2 AA2 5 VAL A 401 LEU A 406 1 O GLN A 405 N LEU A 352 SHEET 3 AA2 5 THR A 511 ARG A 520 -1 O TYR A 518 N LEU A 402 SHEET 4 AA2 5 ASN A 447 GLY A 458 -1 N HIS A 451 O VAL A 517 SHEET 5 AA2 5 GLN A 430 PRO A 432 -1 N LEU A 431 O TYR A 448 SHEET 1 AA3 7 ILE A 350 LEU A 352 0 SHEET 2 AA3 7 VAL A 401 LEU A 406 1 O GLN A 405 N LEU A 352 SHEET 3 AA3 7 THR A 511 ARG A 520 -1 O TYR A 518 N LEU A 402 SHEET 4 AA3 7 ASN A 447 GLY A 458 -1 N HIS A 451 O VAL A 517 SHEET 5 AA3 7 GLY A 463 LEU A 469 -1 O VAL A 466 N VAL A 455 SHEET 6 AA3 7 CYS A 478 ASP A 481 -1 O CYS A 478 N LEU A 469 SHEET 7 AA3 7 VAL A 484 ARG A 487 -1 O VAL A 484 N ASP A 481 SHEET 1 AA4 2 TYR A 379 ASP A 380 0 SHEET 2 AA4 2 LEU A 386 GLN A 387 -1 O GLN A 387 N TYR A 379 SHEET 1 AA5 2 PHE A 409 MET A 410 0 SHEET 2 AA5 2 ILE A 419 LYS A 420 -1 O ILE A 419 N MET A 410 SHEET 1 AA6 4 ARG B 340 TYR B 347 0 SHEET 2 AA6 4 GLY B 326 CYS B 334 -1 N SER B 330 O ARG B 343 SHEET 3 AA6 4 ALA B 389 THR B 397 -1 O GLU B 390 N GLN B 333 SHEET 4 AA6 4 GLU B 371 LEU B 373 -1 N GLU B 371 O LYS B 391 SHEET 1 AA7 5 ILE B 350 LEU B 352 0 SHEET 2 AA7 5 VAL B 401 LEU B 406 1 O GLN B 405 N LEU B 352 SHEET 3 AA7 5 THR B 511 ARG B 520 -1 O LEU B 516 N LEU B 404 SHEET 4 AA7 5 ASN B 447 SER B 457 -1 N HIS B 451 O VAL B 517 SHEET 5 AA7 5 GLN B 430 PRO B 432 -1 N LEU B 431 O TYR B 448 SHEET 1 AA8 7 ILE B 350 LEU B 352 0 SHEET 2 AA8 7 VAL B 401 LEU B 406 1 O GLN B 405 N LEU B 352 SHEET 3 AA8 7 THR B 511 ARG B 520 -1 O LEU B 516 N LEU B 404 SHEET 4 AA8 7 ASN B 447 SER B 457 -1 N HIS B 451 O VAL B 517 SHEET 5 AA8 7 HIS B 464 LEU B 469 -1 O VAL B 466 N VAL B 455 SHEET 6 AA8 7 CYS B 478 ASP B 481 -1 O PHE B 480 N VAL B 467 SHEET 7 AA8 7 VAL B 484 ARG B 487 -1 O SER B 486 N LYS B 479 SHEET 1 AA9 2 TYR B 379 ASP B 380 0 SHEET 2 AA9 2 LEU B 386 GLN B 387 -1 O GLN B 387 N TYR B 379 SHEET 1 AB1 2 PHE B 409 ASP B 412 0 SHEET 2 AB1 2 GLN B 417 LYS B 420 -1 O GLN B 417 N ASP B 412 CRYST1 76.050 69.131 76.858 90.00 96.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013149 0.000000 0.001400 0.00000 SCALE2 0.000000 0.014465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013085 0.00000