HEADER OXIDOREDUCTASE 28-JUL-20 7CMQ TITLE CRYSTAL STRUCTURE OF BACILLUS SP. TB-90 URATE OXIDASE IMPROVED BY TITLE 2 HUMIDITY CONTROL AT 88% RH. COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIC ACID DEGRADATION BIFUNCTIONAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: URATE OXIDASE; COMPND 5 EC: 1.7.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP. (STRAIN TB-90); SOURCE 3 ORGANISM_TAXID: 36824; SOURCE 4 STRAIN: TB-90; SOURCE 5 GENE: UAO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 668369 KEYWDS PROTEIN ENGINEERING, ENZYME, LOOP FLEXIBILITY, ENTROPY OF ACTIVATION, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.HIBI,T.ITOH,Y.NISHIYA REVDAT 2 29-NOV-23 7CMQ 1 REMARK REVDAT 1 12-AUG-20 7CMQ 0 SPRSDE 12-AUG-20 7CMQ 5Z2A JRNL AUTH T.HIBI,T.ITOH,Y.NISHIYA JRNL TITL FLEXIBILITY OF A DISTAL INTERFACE LOOP MODULATES WATER JRNL TITL 2 NETWORK IN THE ACTIVE SITE OF BACILLUS SP. TB-90 URATE JRNL TITL 3 OXIDASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.HIBI,A.KUME,A.KAWAMURA,T.ITOH,H.FUKADA,Y.NISHIYA REMARK 1 TITL HYPERSTABILIZATION OF TETRAMERIC BACILLUS SP. TB-90 URATE REMARK 1 TITL 2 OXIDASE BY INTRODUCING DISULFIDE BONDS THROUGH STRUCTURAL REMARK 1 TITL 3 PLASTICITY. REMARK 1 REF BIOCHEMISTRY V. 55 724 2016 REMARK 1 REFN ISSN 1520-4995 REMARK 1 PMID 26739254 REMARK 1 DOI 10.1021/ACS.BIOCHEM.5B01119. REMARK 1 REFERENCE 2 REMARK 1 AUTH T.HIBI,Y.HAYASHI,H.FUKADA,T.ITOH,T.NAGO,Y.NISHIYA REMARK 1 TITL INTERSUBUNIT SALT BRIDGES WITH A SULFATE ANION CONTROL REMARK 1 TITL 2 SUBUNIT DISSOCIATION AND THERMAL STABILIZATION OF BACILLUS REMARK 1 TITL 3 SP. TB-90 URATE OXIDASE. REMARK 1 REF BIOCHEMISTRY V. 53 3879 2014 REMARK 1 REFN ISSN 1520-4995 REMARK 1 PMID 24897238 REMARK 1 DOI 10.1021/BI500137B REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 82323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1000 - 5.0700 0.92 2668 139 0.2013 0.2358 REMARK 3 2 5.0700 - 4.0200 0.99 2745 145 0.1392 0.1698 REMARK 3 3 4.0200 - 3.5100 1.00 2767 146 0.1601 0.1780 REMARK 3 4 3.5100 - 3.1900 1.00 2746 144 0.1643 0.1949 REMARK 3 5 3.1900 - 2.9600 1.00 2719 143 0.1621 0.1726 REMARK 3 6 2.9600 - 2.7900 1.00 2744 145 0.1592 0.1667 REMARK 3 7 2.7900 - 2.6500 1.00 2722 143 0.1588 0.1675 REMARK 3 8 2.6500 - 2.5300 1.00 2693 142 0.1601 0.2076 REMARK 3 9 2.5300 - 2.4400 1.00 2716 143 0.1687 0.2045 REMARK 3 10 2.4400 - 2.3500 1.00 2728 143 0.1674 0.2082 REMARK 3 11 2.3500 - 2.2800 1.00 2688 142 0.1620 0.2031 REMARK 3 12 2.2800 - 2.2100 1.00 2705 142 0.1582 0.1987 REMARK 3 13 2.2100 - 2.1600 1.00 2699 142 0.1548 0.2131 REMARK 3 14 2.1600 - 2.1000 1.00 2700 142 0.1564 0.1780 REMARK 3 15 2.1000 - 2.0500 1.00 2685 141 0.1616 0.1816 REMARK 3 16 2.0500 - 2.0100 1.00 2675 141 0.1626 0.2127 REMARK 3 17 2.0100 - 1.9700 1.00 2691 142 0.1683 0.1857 REMARK 3 18 1.9700 - 1.9300 1.00 2692 141 0.1726 0.2125 REMARK 3 19 1.9300 - 1.9000 1.00 2711 143 0.1864 0.2152 REMARK 3 20 1.9000 - 1.8700 1.00 2679 141 0.1860 0.2086 REMARK 3 21 1.8700 - 1.8400 1.00 2695 142 0.1898 0.2149 REMARK 3 22 1.8400 - 1.8100 1.00 2688 142 0.1907 0.2114 REMARK 3 23 1.8100 - 1.7800 1.00 2690 141 0.1977 0.2412 REMARK 3 24 1.7800 - 1.7600 1.00 2696 142 0.1995 0.2256 REMARK 3 25 1.7600 - 1.7300 1.00 2660 140 0.2110 0.2822 REMARK 3 26 1.7300 - 1.7100 1.00 2698 142 0.2276 0.2683 REMARK 3 27 1.7100 - 1.6900 1.00 2658 140 0.2453 0.2872 REMARK 3 28 1.6900 - 1.6700 1.00 2711 143 0.2481 0.2525 REMARK 3 29 1.6700 - 1.6500 0.96 2539 133 0.3293 0.3524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.172 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.051 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4997 REMARK 3 ANGLE : 1.036 6780 REMARK 3 CHIRALITY : 0.060 756 REMARK 3 PLANARITY : 0.007 865 REMARK 3 DIHEDRAL : 14.346 1782 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 13.9651 4.1901 38.4381 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.2049 REMARK 3 T33: 0.1808 T12: -0.0075 REMARK 3 T13: 0.0169 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.6462 L22: 0.5130 REMARK 3 L33: 0.5146 L12: -0.0973 REMARK 3 L13: 0.0087 L23: -0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: 0.2135 S13: 0.0777 REMARK 3 S21: -0.0664 S22: 0.0045 S23: -0.0605 REMARK 3 S31: -0.0340 S32: 0.0648 S33: -0.0232 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82336 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 46.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WLV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 8000, 0.1 M TRIS-HCL, 0.08 M REMARK 280 K2SO4, 2 MM 8-AZAXTHANTINE, PH 8.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.53150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.72150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.25700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.53150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.72150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.25700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.53150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.72150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.25700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.53150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.72150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.25700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 7 REMARK 465 ASN A 130 REMARK 465 GLU A 311 REMARK 465 ASP A 312 REMARK 465 LEU A 313 REMARK 465 PRO A 314 REMARK 465 HIS A 315 REMARK 465 GLU A 316 REMARK 465 ASN A 317 REMARK 465 ILE A 318 REMARK 465 LEU A 319 REMARK 465 ARG B 7 REMARK 465 ASP B 312 REMARK 465 LEU B 313 REMARK 465 PRO B 314 REMARK 465 HIS B 315 REMARK 465 GLU B 316 REMARK 465 ASN B 317 REMARK 465 ILE B 318 REMARK 465 LEU B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 10 CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 29 CG1 CG2 REMARK 470 LYS A 50 CE NZ REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 VAL A 128 CG1 CG2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 ASN A 132 CG OD1 ND2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 ASN A 160 OD1 ND2 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 ASN A 223 CG OD1 ND2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 ARG A 258 CZ NH1 NH2 REMARK 470 GLN A 268 OE1 NE2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 TYR B 10 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 50 CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 LYS B 82 CD CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 GLU B 158 CG CD OE1 OE2 REMARK 470 ARG B 258 CZ NH1 NH2 REMARK 470 GLU B 269 OE1 OE2 REMARK 470 LYS B 281 CE NZ REMARK 470 GLU B 284 CG CD OE1 OE2 REMARK 470 GLU B 285 CG CD OE1 OE2 REMARK 470 GLU B 288 CG CD OE1 OE2 REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 38 11.07 -142.59 REMARK 500 ASN A 145 -145.09 -92.77 REMARK 500 ASP A 190 -158.56 -144.72 REMARK 500 ASN A 200 85.39 -155.97 REMARK 500 SER A 248 167.95 177.63 REMARK 500 ASN B 145 -146.34 -93.59 REMARK 500 ASN B 200 89.60 -159.56 REMARK 500 SER B 248 166.16 172.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 724 DISTANCE = 6.78 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXY A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXY B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 DBREF 7CMQ A 7 319 UNP Q45697 PUCL_BACSB 177 489 DBREF 7CMQ B 7 319 UNP Q45697 PUCL_BACSB 177 489 SEQRES 1 A 313 ARG VAL MET TYR TYR GLY LYS GLY ASP VAL PHE ALA TYR SEQRES 2 A 313 ARG THR TYR LEU LYS PRO LEU THR GLY VAL ARG THR ILE SEQRES 3 A 313 PRO GLU SER PRO PHE SER GLY ARG ASP HIS ILE LEU PHE SEQRES 4 A 313 GLY VAL ASN VAL LYS ILE SER VAL GLY GLY THR LYS LEU SEQRES 5 A 313 LEU THR SER PHE THR LYS GLY ASP ASN SER LEU VAL VAL SEQRES 6 A 313 ALA THR ASP SER MET LYS ASN PHE ILE GLN LYS HIS LEU SEQRES 7 A 313 ALA SER TYR THR GLY THR THR ILE GLU GLY PHE LEU GLU SEQRES 8 A 313 TYR VAL ALA THR SER PHE LEU LYS LYS TYR SER HIS ILE SEQRES 9 A 313 GLU LYS ILE SER LEU ILE GLY GLU GLU ILE PRO PHE GLU SEQRES 10 A 313 THR THR PHE ALA VAL LYS ASN GLY ASN ARG ALA ALA SER SEQRES 11 A 313 GLU LEU VAL PHE LYS LYS SER ARG ASN GLU TYR ALA THR SEQRES 12 A 313 ALA TYR LEU ASN MET VAL ARG ASN GLU ASP ASN THR LEU SEQRES 13 A 313 ASN ILE THR GLU GLN GLN SER GLY LEU ALA GLY LEU GLN SEQRES 14 A 313 LEU ILE LYS VAL SER GLY ASN SER PHE VAL GLY PHE ILE SEQRES 15 A 313 ARG ASP GLU TYR THR THR LEU PRO GLU ASP SER ASN ARG SEQRES 16 A 313 PRO LEU PHE VAL TYR LEU ASN ILE LYS TRP LYS TYR LYS SEQRES 17 A 313 ASN THR GLU ASP SER PHE GLY THR ASN PRO GLU ASN TYR SEQRES 18 A 313 VAL ALA ALA GLU GLN ILE ARG ASP ILE ALA THR SER VAL SEQRES 19 A 313 PHE HIS GLU THR GLU THR LEU SER ILE GLN HIS LEU ILE SEQRES 20 A 313 TYR LEU ILE GLY ARG ARG ILE LEU GLU ARG PHE PRO GLN SEQRES 21 A 313 LEU GLN GLU VAL TYR PHE GLU SER GLN ASN HIS THR TRP SEQRES 22 A 313 ASP LYS ILE VAL GLU GLU ILE PRO GLU SER GLU GLY LYS SEQRES 23 A 313 VAL TYR THR GLU PRO ARG PRO PRO TYR GLY PHE GLN CYS SEQRES 24 A 313 PHE THR VAL THR GLN GLU ASP LEU PRO HIS GLU ASN ILE SEQRES 25 A 313 LEU SEQRES 1 B 313 ARG VAL MET TYR TYR GLY LYS GLY ASP VAL PHE ALA TYR SEQRES 2 B 313 ARG THR TYR LEU LYS PRO LEU THR GLY VAL ARG THR ILE SEQRES 3 B 313 PRO GLU SER PRO PHE SER GLY ARG ASP HIS ILE LEU PHE SEQRES 4 B 313 GLY VAL ASN VAL LYS ILE SER VAL GLY GLY THR LYS LEU SEQRES 5 B 313 LEU THR SER PHE THR LYS GLY ASP ASN SER LEU VAL VAL SEQRES 6 B 313 ALA THR ASP SER MET LYS ASN PHE ILE GLN LYS HIS LEU SEQRES 7 B 313 ALA SER TYR THR GLY THR THR ILE GLU GLY PHE LEU GLU SEQRES 8 B 313 TYR VAL ALA THR SER PHE LEU LYS LYS TYR SER HIS ILE SEQRES 9 B 313 GLU LYS ILE SER LEU ILE GLY GLU GLU ILE PRO PHE GLU SEQRES 10 B 313 THR THR PHE ALA VAL LYS ASN GLY ASN ARG ALA ALA SER SEQRES 11 B 313 GLU LEU VAL PHE LYS LYS SER ARG ASN GLU TYR ALA THR SEQRES 12 B 313 ALA TYR LEU ASN MET VAL ARG ASN GLU ASP ASN THR LEU SEQRES 13 B 313 ASN ILE THR GLU GLN GLN SER GLY LEU ALA GLY LEU GLN SEQRES 14 B 313 LEU ILE LYS VAL SER GLY ASN SER PHE VAL GLY PHE ILE SEQRES 15 B 313 ARG ASP GLU TYR THR THR LEU PRO GLU ASP SER ASN ARG SEQRES 16 B 313 PRO LEU PHE VAL TYR LEU ASN ILE LYS TRP LYS TYR LYS SEQRES 17 B 313 ASN THR GLU ASP SER PHE GLY THR ASN PRO GLU ASN TYR SEQRES 18 B 313 VAL ALA ALA GLU GLN ILE ARG ASP ILE ALA THR SER VAL SEQRES 19 B 313 PHE HIS GLU THR GLU THR LEU SER ILE GLN HIS LEU ILE SEQRES 20 B 313 TYR LEU ILE GLY ARG ARG ILE LEU GLU ARG PHE PRO GLN SEQRES 21 B 313 LEU GLN GLU VAL TYR PHE GLU SER GLN ASN HIS THR TRP SEQRES 22 B 313 ASP LYS ILE VAL GLU GLU ILE PRO GLU SER GLU GLY LYS SEQRES 23 B 313 VAL TYR THR GLU PRO ARG PRO PRO TYR GLY PHE GLN CYS SEQRES 24 B 313 PHE THR VAL THR GLN GLU ASP LEU PRO HIS GLU ASN ILE SEQRES 25 B 313 LEU HET AZA A 401 14 HET OXY A 402 2 HET SO4 A 403 5 HET EDO A 404 10 HET AZA B 401 14 HET OXY B 402 2 HET EDO B 403 10 HET EDO B 404 10 HET EDO B 405 10 HET EDO B 406 10 HETNAM AZA 8-AZAXANTHINE HETNAM OXY OXYGEN MOLECULE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 AZA 2(C4 H3 N5 O2) FORMUL 4 OXY 2(O2) FORMUL 5 SO4 O4 S 2- FORMUL 6 EDO 5(C2 H6 O2) FORMUL 13 HOH *386(H2 O) HELIX 1 AA1 GLY A 55 LYS A 57 5 3 HELIX 2 AA2 LEU A 58 LYS A 64 1 7 HELIX 3 AA3 ALA A 72 TYR A 87 1 16 HELIX 4 AA4 THR A 91 TYR A 107 1 17 HELIX 5 AA5 ASN A 215 GLY A 221 5 7 HELIX 6 AA6 ASN A 223 TYR A 227 5 5 HELIX 7 AA7 ALA A 229 THR A 244 1 16 HELIX 8 AA8 SER A 248 PHE A 264 1 17 HELIX 9 AA9 GLY B 55 LYS B 57 5 3 HELIX 10 AB1 LEU B 58 LYS B 64 1 7 HELIX 11 AB2 ALA B 72 TYR B 87 1 16 HELIX 12 AB3 THR B 91 TYR B 107 1 17 HELIX 13 AB4 ASN B 215 PHE B 220 5 6 HELIX 14 AB5 ASN B 223 TYR B 227 5 5 HELIX 15 AB6 ALA B 229 THR B 244 1 16 HELIX 16 AB7 SER B 248 PHE B 264 1 17 SHEET 1 AA117 MET A 9 THR A 21 0 SHEET 2 AA117 LEU A 44 GLY A 54 -1 O PHE A 45 N ARG A 20 SHEET 3 AA117 LYS A 112 GLU A 119 -1 O SER A 114 N SER A 52 SHEET 4 AA117 TYR A 147 ARG A 156 -1 O MET A 154 N ILE A 113 SHEET 5 AA117 LEU A 162 ILE A 177 -1 O ALA A 172 N TYR A 147 SHEET 6 AA117 PHE A 204 TYR A 213 -1 O LEU A 207 N LEU A 174 SHEET 7 AA117 LEU A 267 ASN A 276 -1 O TYR A 271 N LYS A 210 SHEET 8 AA117 TYR A 301 THR A 309 -1 O VAL A 308 N VAL A 270 SHEET 9 AA117 MET B 9 THR B 21 -1 O GLY B 14 N TYR A 301 SHEET 10 AA117 LEU B 44 GLY B 54 -1 O PHE B 45 N ARG B 20 SHEET 11 AA117 LYS B 112 ILE B 120 -1 O SER B 114 N SER B 52 SHEET 12 AA117 TYR B 147 ARG B 156 -1 O ALA B 148 N GLU B 119 SHEET 13 AA117 LEU B 162 ILE B 177 -1 O ALA B 172 N TYR B 147 SHEET 14 AA117 PHE B 204 TYR B 213 -1 O LEU B 207 N LEU B 174 SHEET 15 AA117 LEU B 267 ASN B 276 -1 O TYR B 271 N LYS B 210 SHEET 16 AA117 TYR B 301 THR B 309 -1 O VAL B 308 N VAL B 270 SHEET 17 AA117 MET A 9 THR A 21 -1 N GLY A 14 O TYR B 301 SHEET 1 AA2 2 PHE A 122 VAL A 128 0 SHEET 2 AA2 2 ARG A 133 LYS A 142 -1 O LYS A 141 N GLU A 123 SHEET 1 AA3 2 ASP A 280 VAL A 283 0 SHEET 2 AA3 2 VAL A 293 THR A 295 -1 O VAL A 293 N ILE A 282 SHEET 1 AA4 2 PHE B 122 LYS B 129 0 SHEET 2 AA4 2 ASN B 132 LYS B 142 -1 O LYS B 141 N GLU B 123 SHEET 1 AA5 2 ASP B 280 VAL B 283 0 SHEET 2 AA5 2 VAL B 293 THR B 295 -1 O VAL B 293 N ILE B 282 SITE 1 AC1 11 PHE A 184 LEU A 195 ARG A 201 SER A 248 SITE 2 AC1 11 ILE A 249 GLN A 250 ASN A 276 OXY A 402 SITE 3 AC1 11 HOH A 595 ALA B 72 THR B 73 SITE 1 AC2 5 ASN A 276 GLY A 302 GLN A 304 AZA A 401 SITE 2 AC2 5 THR B 73 SITE 1 AC3 2 ARG A 298 ARG B 298 SITE 1 AC4 7 HIS A 42 ILE A 43 LEU A 44 PHE A 122 SITE 2 AC4 7 PHE A 140 HOH A 539 HOH A 542 SITE 1 AC5 11 ALA A 72 THR A 73 PHE B 184 LEU B 195 SITE 2 AC5 11 ARG B 201 SER B 248 ILE B 249 GLN B 250 SITE 3 AC5 11 ASN B 276 OXY B 402 HOH B 592 SITE 1 AC6 5 THR A 73 ASN B 276 GLY B 302 GLN B 304 SITE 2 AC6 5 AZA B 401 SITE 1 AC7 4 GLU B 119 GLU B 231 ARG B 234 EDO B 404 SITE 1 AC8 6 GLU B 123 SER B 143 ASN B 145 GLU B 146 SITE 2 AC8 6 EDO B 403 HOH B 551 SITE 1 AC9 7 HIS B 42 ILE B 43 LEU B 44 PHE B 122 SITE 2 AC9 7 PHE B 140 HOH B 560 HOH B 599 SITE 1 AD1 4 GLU B 119 HOH B 525 HOH B 538 HOH B 569 CRYST1 71.063 133.443 144.514 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006920 0.00000