HEADER LYASE 29-JUL-20 7CMY TITLE ISOCITRATE LYASE FROM BACILLUS CEREUS ATCC 14579 IN COMPLEX WITH TITLE 2 MAGNESSIUM ION, GLYOXYLATE, AND SUCCINATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE LYASE; COMPND 3 CHAIN: C, A; COMPND 4 EC: 4.1.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS (STRAIN ATCC 14579 / DSM 31 / SOURCE 3 JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711); SOURCE 4 ORGANISM_TAXID: 226900; SOURCE 5 STRAIN: ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / SOURCE 6 NRRL B-3711; SOURCE 7 GENE: BC_1128; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS ISOCITRATE LYASE, BACILLUS CEREUS, GLYOXYLATE CYCLE, METAL KEYWDS 2 UTILIZATION ENZYME, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.KIM,D.KI,S.H.LEE REVDAT 2 29-NOV-23 7CMY 1 REMARK REVDAT 1 04-AUG-21 7CMY 0 JRNL AUTH K.KIM,D.KI,S.H.LEE JRNL TITL ISOCITRATE LYASE FROM BACILLUS CEREUS ATCC 14579 IN COMPLEX JRNL TITL 2 WITH MAGNESSIUM ION, GLYOXYLATE, AND SUCCINATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 29820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1563 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2204 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6454 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.753 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.343 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.251 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.185 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6628 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5991 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8964 ; 1.672 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13896 ; 1.329 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 831 ; 7.520 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 362 ;33.969 ;22.735 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1094 ;16.586 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;19.771 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 855 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7578 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1414 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31543 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.17800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 1.20100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3I4E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% PEG 400, 100MM CHES PH 9.5, 200MM REMARK 280 NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.07800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.45500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.03900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.45500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.11700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.45500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.45500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.03900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.45500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.45500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 147.11700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.07800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -171.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 98.07800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 ASP C 320 REMARK 465 GLU C 321 REMARK 465 LYS C 322 REMARK 465 ALA C 323 REMARK 465 ILE C 324 REMARK 465 THR C 424 REMARK 465 LYS C 425 REMARK 465 LEU C 426 REMARK 465 GLU C 427 REMARK 465 HIS C 428 REMARK 465 HIS C 429 REMARK 465 HIS C 430 REMARK 465 HIS C 431 REMARK 465 HIS C 432 REMARK 465 HIS C 433 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 318 REMARK 465 GLU A 419 REMARK 465 GLU A 420 REMARK 465 ALA A 421 REMARK 465 GLN A 422 REMARK 465 PHE A 423 REMARK 465 THR A 424 REMARK 465 LYS A 425 REMARK 465 LEU A 426 REMARK 465 GLU A 427 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 330 OG SER A 333 1.43 REMARK 500 NE2 GLN A 156 OD1 ASN A 203 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 4 -73.63 -36.02 REMARK 500 PRO C 25 41.42 -88.76 REMARK 500 ASP C 94 2.03 -150.15 REMARK 500 ALA C 95 41.48 -155.26 REMARK 500 ASP C 104 76.71 -68.49 REMARK 500 GLN C 105 33.88 -145.35 REMARK 500 GLU C 150 -126.75 43.22 REMARK 500 TRP C 315 73.29 -53.66 REMARK 500 SER C 326 6.67 170.37 REMARK 500 SER C 409 122.39 -37.78 REMARK 500 LYS C 415 108.03 -57.71 REMARK 500 LYS A 8 22.59 -67.74 REMARK 500 LEU A 9 -70.43 -128.68 REMARK 500 PRO A 25 46.25 -85.08 REMARK 500 TYR A 61 169.25 173.61 REMARK 500 ALA A 95 34.23 -148.36 REMARK 500 GLU A 150 -125.22 40.07 REMARK 500 PRO A 217 44.35 -82.22 REMARK 500 TRP A 315 35.93 -66.93 REMARK 500 LYS A 316 -8.93 -147.07 REMARK 500 THR A 412 136.90 -36.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 14 LEU A 15 -149.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 691 DISTANCE = 6.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 148 OD2 REMARK 620 2 SIN C 502 O4 131.6 REMARK 620 3 GLV C 503 O1 70.9 63.1 REMARK 620 4 GLV C 503 O3 73.8 79.4 73.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 148 OD2 REMARK 620 2 GLV A 503 O1 76.6 REMARK 620 3 GLV A 503 O3 73.8 66.2 REMARK 620 N 1 2 DBREF 7CMY C 1 425 UNP Q81GQ9 Q81GQ9_BACCR 1 425 DBREF 7CMY A 1 425 UNP Q81GQ9 Q81GQ9_BACCR 1 425 SEQADV 7CMY LEU C 426 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY GLU C 427 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS C 428 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS C 429 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS C 430 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS C 431 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS C 432 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS C 433 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY LEU A 426 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY GLU A 427 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS A 428 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS A 429 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS A 430 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS A 431 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS A 432 UNP Q81GQ9 EXPRESSION TAG SEQADV 7CMY HIS A 433 UNP Q81GQ9 EXPRESSION TAG SEQRES 1 C 433 MET LYS ASN GLU ARG ILE GLU LYS LEU GLN GLU SER TRP SEQRES 2 C 433 GLU LEU ASP GLU ARG TRP GLU GLY ILE THR ARG PRO TYR SEQRES 3 C 433 SER ALA GLU ASP VAL ILE ARG LEU ARG GLY SER ILE ASP SEQRES 4 C 433 ILE GLU HIS THR LEU ALA ARG ARG GLY ALA GLU LYS LEU SEQRES 5 C 433 TRP THR SER LEU HIS THR GLU ASP TYR ILE ASN ALA LEU SEQRES 6 C 433 GLY ALA LEU THR GLY ASN GLN ALA MET GLN GLN VAL LYS SEQRES 7 C 433 ALA GLY LEU LYS ALA ILE TYR LEU SER GLY TRP GLN VAL SEQRES 8 C 433 ALA ALA ASP ALA ASN LEU SER GLY HIS MET TYR PRO ASP SEQRES 9 C 433 GLN SER LEU TYR PRO ALA ASN SER VAL PRO ALA VAL VAL SEQRES 10 C 433 LYS ARG ILE ASN GLN THR LEU GLN ARG ALA ASP GLN ILE SEQRES 11 C 433 GLN HIS MET GLU GLY SER ASP ASP THR ASP TYR PHE VAL SEQRES 12 C 433 PRO ILE VAL ALA ASP ALA GLU ALA GLY PHE GLY GLY GLN SEQRES 13 C 433 LEU ASN VAL PHE GLU LEU MET LYS GLY MET ILE GLU ALA SEQRES 14 C 433 GLY ALA SER GLY VAL HIS PHE GLU ASP GLN LEU SER SER SEQRES 15 C 433 GLU LYS LYS CYS GLY HIS LEU GLY GLY LYS VAL LEU LEU SEQRES 16 C 433 PRO THR GLN THR ALA VAL ARG ASN LEU ILE SER ALA ARG SEQRES 17 C 433 LEU ALA ALA ASP VAL MET GLY VAL PRO THR ILE ILE VAL SEQRES 18 C 433 ALA ARG THR ASP ALA ASP ALA ALA ASP LEU ILE THR SER SEQRES 19 C 433 ASP ILE ASP PRO VAL ASP LYS ALA PHE ILE THR GLY GLU SEQRES 20 C 433 ARG THR PRO GLU GLY PHE TYR ARG THR ASN ALA GLY LEU SEQRES 21 C 433 ASP GLN ALA ILE ALA ARG GLY LEU ALA TYR ALA PRO TYR SEQRES 22 C 433 ALA ASP LEU VAL TRP CYS GLU THR SER GLU PRO ASN LEU SEQRES 23 C 433 GLU ASP ALA LYS ARG PHE ALA ASP ALA ILE HIS LYS GLU SEQRES 24 C 433 HIS PRO GLY LYS LEU LEU ALA TYR ASN CYS SER PRO SER SEQRES 25 C 433 PHE ASN TRP LYS GLN LYS LEU ASP GLU LYS ALA ILE ALA SEQRES 26 C 433 SER PHE GLN LYS GLU ILE ALA SER TYR GLY TYR LYS PHE SEQRES 27 C 433 GLN PHE VAL THR LEU ALA GLY PHE HIS SER LEU ASN TYR SEQRES 28 C 433 GLY MET PHE GLU LEU ALA ARG GLY TYR LYS GLU ARG GLY SEQRES 29 C 433 MET ALA ALA TYR SER GLU LEU GLN GLN ALA GLU PHE ALA SEQRES 30 C 433 ALA GLU LYS HIS GLY TYR SER ALA THR ARG HIS GLN ARG SEQRES 31 C 433 GLU VAL GLY THR GLY TYR PHE ASP GLU VAL ALA GLN VAL SEQRES 32 C 433 ILE THR GLY GLY THR SER SER THR THR ALA LEU LYS GLY SEQRES 33 C 433 SER THR GLU GLU ALA GLN PHE THR LYS LEU GLU HIS HIS SEQRES 34 C 433 HIS HIS HIS HIS SEQRES 1 A 433 MET LYS ASN GLU ARG ILE GLU LYS LEU GLN GLU SER TRP SEQRES 2 A 433 GLU LEU ASP GLU ARG TRP GLU GLY ILE THR ARG PRO TYR SEQRES 3 A 433 SER ALA GLU ASP VAL ILE ARG LEU ARG GLY SER ILE ASP SEQRES 4 A 433 ILE GLU HIS THR LEU ALA ARG ARG GLY ALA GLU LYS LEU SEQRES 5 A 433 TRP THR SER LEU HIS THR GLU ASP TYR ILE ASN ALA LEU SEQRES 6 A 433 GLY ALA LEU THR GLY ASN GLN ALA MET GLN GLN VAL LYS SEQRES 7 A 433 ALA GLY LEU LYS ALA ILE TYR LEU SER GLY TRP GLN VAL SEQRES 8 A 433 ALA ALA ASP ALA ASN LEU SER GLY HIS MET TYR PRO ASP SEQRES 9 A 433 GLN SER LEU TYR PRO ALA ASN SER VAL PRO ALA VAL VAL SEQRES 10 A 433 LYS ARG ILE ASN GLN THR LEU GLN ARG ALA ASP GLN ILE SEQRES 11 A 433 GLN HIS MET GLU GLY SER ASP ASP THR ASP TYR PHE VAL SEQRES 12 A 433 PRO ILE VAL ALA ASP ALA GLU ALA GLY PHE GLY GLY GLN SEQRES 13 A 433 LEU ASN VAL PHE GLU LEU MET LYS GLY MET ILE GLU ALA SEQRES 14 A 433 GLY ALA SER GLY VAL HIS PHE GLU ASP GLN LEU SER SER SEQRES 15 A 433 GLU LYS LYS CYS GLY HIS LEU GLY GLY LYS VAL LEU LEU SEQRES 16 A 433 PRO THR GLN THR ALA VAL ARG ASN LEU ILE SER ALA ARG SEQRES 17 A 433 LEU ALA ALA ASP VAL MET GLY VAL PRO THR ILE ILE VAL SEQRES 18 A 433 ALA ARG THR ASP ALA ASP ALA ALA ASP LEU ILE THR SER SEQRES 19 A 433 ASP ILE ASP PRO VAL ASP LYS ALA PHE ILE THR GLY GLU SEQRES 20 A 433 ARG THR PRO GLU GLY PHE TYR ARG THR ASN ALA GLY LEU SEQRES 21 A 433 ASP GLN ALA ILE ALA ARG GLY LEU ALA TYR ALA PRO TYR SEQRES 22 A 433 ALA ASP LEU VAL TRP CYS GLU THR SER GLU PRO ASN LEU SEQRES 23 A 433 GLU ASP ALA LYS ARG PHE ALA ASP ALA ILE HIS LYS GLU SEQRES 24 A 433 HIS PRO GLY LYS LEU LEU ALA TYR ASN CYS SER PRO SER SEQRES 25 A 433 PHE ASN TRP LYS GLN LYS LEU ASP GLU LYS ALA ILE ALA SEQRES 26 A 433 SER PHE GLN LYS GLU ILE ALA SER TYR GLY TYR LYS PHE SEQRES 27 A 433 GLN PHE VAL THR LEU ALA GLY PHE HIS SER LEU ASN TYR SEQRES 28 A 433 GLY MET PHE GLU LEU ALA ARG GLY TYR LYS GLU ARG GLY SEQRES 29 A 433 MET ALA ALA TYR SER GLU LEU GLN GLN ALA GLU PHE ALA SEQRES 30 A 433 ALA GLU LYS HIS GLY TYR SER ALA THR ARG HIS GLN ARG SEQRES 31 A 433 GLU VAL GLY THR GLY TYR PHE ASP GLU VAL ALA GLN VAL SEQRES 32 A 433 ILE THR GLY GLY THR SER SER THR THR ALA LEU LYS GLY SEQRES 33 A 433 SER THR GLU GLU ALA GLN PHE THR LYS LEU GLU HIS HIS SEQRES 34 A 433 HIS HIS HIS HIS HET MG C 501 1 HET SIN C 502 8 HET GLV C 503 5 HET MG A 501 1 HET SIN A 502 8 HET GLV A 503 5 HETNAM MG MAGNESIUM ION HETNAM SIN SUCCINIC ACID HETNAM GLV GLYOXYLIC ACID HETSYN GLV GLYOXALATE; GLYOXYLATE FORMUL 3 MG 2(MG 2+) FORMUL 4 SIN 2(C4 H6 O4) FORMUL 5 GLV 2(C2 H2 O3) FORMUL 9 HOH *193(H2 O) HELIX 1 AA1 LYS C 2 ASP C 16 1 15 HELIX 2 AA2 GLU C 17 GLU C 20 5 4 HELIX 3 AA3 SER C 27 GLY C 36 1 10 HELIX 4 AA4 HIS C 42 HIS C 57 1 16 HELIX 5 AA5 THR C 69 GLY C 80 1 12 HELIX 6 AA6 SER C 87 ALA C 95 1 9 HELIX 7 AA7 ASN C 111 GLY C 135 1 25 HELIX 8 AA8 GLY C 155 ALA C 169 1 15 HELIX 9 AA9 LEU C 180 LYS C 184 5 5 HELIX 10 AB1 PRO C 196 MET C 214 1 19 HELIX 11 AB2 ASP C 237 ALA C 242 5 6 HELIX 12 AB3 GLY C 259 ALA C 271 1 13 HELIX 13 AB4 PRO C 272 ALA C 274 5 3 HELIX 14 AB5 ASN C 285 HIS C 300 1 16 HELIX 15 AB6 SER C 326 SER C 333 1 8 HELIX 16 AB7 LEU C 343 GLY C 364 1 22 HELIX 17 AB8 GLY C 364 ALA C 378 1 15 HELIX 18 AB9 GLU C 379 GLY C 382 5 4 HELIX 19 AC1 ARG C 387 VAL C 392 1 6 HELIX 20 AC2 GLY C 393 GLY C 406 1 14 HELIX 21 AC3 SER C 417 GLN C 422 1 6 HELIX 22 AC4 GLU A 4 ASP A 16 1 13 HELIX 23 AC5 GLU A 17 GLU A 20 5 4 HELIX 24 AC6 SER A 27 GLY A 36 1 10 HELIX 25 AC7 HIS A 42 GLU A 59 1 18 HELIX 26 AC8 THR A 69 GLY A 80 1 12 HELIX 27 AC9 SER A 87 ALA A 95 1 9 HELIX 28 AD1 ASN A 111 GLY A 135 1 25 HELIX 29 AD2 GLY A 155 GLY A 170 1 16 HELIX 30 AD3 LEU A 180 LYS A 184 5 5 HELIX 31 AD4 PRO A 196 MET A 214 1 19 HELIX 32 AD5 ASP A 237 ALA A 242 1 6 HELIX 33 AD6 GLY A 259 ALA A 271 1 13 HELIX 34 AD7 PRO A 272 ALA A 274 5 3 HELIX 35 AD8 ASN A 285 HIS A 300 1 16 HELIX 36 AD9 ASP A 320 SER A 326 1 7 HELIX 37 AE1 SER A 326 SER A 333 1 8 HELIX 38 AE2 LEU A 343 GLY A 364 1 22 HELIX 39 AE3 GLY A 364 GLU A 379 1 16 HELIX 40 AE4 LYS A 380 GLY A 382 5 3 HELIX 41 AE5 ARG A 387 VAL A 392 1 6 HELIX 42 AE6 GLY A 393 GLY A 406 1 14 SHEET 1 AA1 8 ILE C 62 LEU C 65 0 SHEET 2 AA1 8 TYR C 336 VAL C 341 1 O LYS C 337 N ILE C 62 SHEET 3 AA1 8 LEU C 304 ASN C 308 1 N TYR C 307 O PHE C 338 SHEET 4 AA1 8 LEU C 276 CYS C 279 1 N VAL C 277 O ALA C 306 SHEET 5 AA1 8 ILE C 219 THR C 224 1 N ALA C 222 O TRP C 278 SHEET 6 AA1 8 GLY C 173 GLU C 177 1 N PHE C 176 O ARG C 223 SHEET 7 AA1 8 ILE C 145 ASP C 148 1 N ALA C 147 O GLY C 173 SHEET 8 AA1 8 ILE C 84 LEU C 86 1 N LEU C 86 O VAL C 146 SHEET 1 AA2 3 LEU C 231 ILE C 232 0 SHEET 2 AA2 3 TYR C 254 THR C 256 -1 O TYR C 254 N ILE C 232 SHEET 3 AA2 3 ILE C 244 ARG C 248 -1 N GLU C 247 O ARG C 255 SHEET 1 AA3 8 ILE A 62 LEU A 65 0 SHEET 2 AA3 8 TYR A 336 VAL A 341 1 O LYS A 337 N ILE A 62 SHEET 3 AA3 8 LEU A 304 ASN A 308 1 N TYR A 307 O PHE A 338 SHEET 4 AA3 8 LEU A 276 CYS A 279 1 N VAL A 277 O ALA A 306 SHEET 5 AA3 8 ILE A 219 THR A 224 1 N ALA A 222 O LEU A 276 SHEET 6 AA3 8 GLY A 173 GLU A 177 1 N VAL A 174 O VAL A 221 SHEET 7 AA3 8 ILE A 145 ASP A 148 1 N ALA A 147 O GLY A 173 SHEET 8 AA3 8 ILE A 84 LEU A 86 1 N LEU A 86 O VAL A 146 SHEET 1 AA4 3 LEU A 231 ILE A 232 0 SHEET 2 AA4 3 TYR A 254 THR A 256 -1 O TYR A 254 N ILE A 232 SHEET 3 AA4 3 ILE A 244 ARG A 248 -1 N GLU A 247 O ARG A 255 LINK OD2 ASP C 148 MG MG C 501 1555 1555 2.49 LINK MG MG C 501 O4 SIN C 502 1555 1555 2.88 LINK MG MG C 501 O1 GLV C 503 1555 1555 2.03 LINK MG MG C 501 O3 GLV C 503 1555 1555 2.27 LINK OD2 ASP A 148 MG MG A 501 1555 1555 2.21 LINK MG MG A 501 O1 GLV A 503 1555 1555 2.73 LINK MG MG A 501 O3 GLV A 503 1555 1555 1.92 CRYST1 94.910 94.910 196.156 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010536 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005098 0.00000