HEADER PROTEIN BINDING 30-JUL-20 7CNA TITLE CRYSTAL STRUCTURE OF SPINDLIN1/C11ORF84 COMPLEX BOUND TO HISTONE TITLE 2 H3K4ME3K9ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPINDLIN-1; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: OVARIAN CANCER-RELATED PROTEIN,SPINDLIN1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SPINDLIN INTERACTOR AND REPRESSOR OF CHROMATIN-BINDING COMPND 8 PROTEIN; COMPND 9 CHAIN: B, E; COMPND 10 SYNONYM: SPIN1-DOCKING PROTEIN,SPIN-DOC; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: ALA-ARG-THR-M3L-GLN-THR-ALA-ARG-M3L-SER-THR; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: ALA-ARG-THR-M3L-GLN-THR-ALA-ARG-M3L-SER-GLY; COMPND 18 CHAIN: F; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPIN1, OCR, SPIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SPINDOC, C11ORF84; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630 KEYWDS EPIGENETIC READER, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.M.QIAN REVDAT 4 29-NOV-23 7CNA 1 REMARK REVDAT 3 18-AUG-21 7CNA 1 COMPND HET FORMUL ATOM REVDAT 2 11-AUG-21 7CNA 1 JRNL REVDAT 1 13-JAN-21 7CNA 0 JRNL AUTH Y.DU,Y.YAN,S.XIE,H.HUANG,X.WANG,R.K.NG,M.M.ZHOU,C.QIAN JRNL TITL STRUCTURAL MECHANISM OF BIVALENT HISTONE H3K4ME3K9ME3 JRNL TITL 2 RECOGNITION BY THE SPINDLIN1/C11ORF84 COMPLEX IN RRNA JRNL TITL 3 TRANSCRIPTION ACTIVATION. JRNL REF NAT COMMUN V. 12 949 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33574238 JRNL DOI 10.1038/S41467-021-21236-X REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 64741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.1950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3891 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.381 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4060 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3688 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5506 ; 1.798 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8526 ; 1.468 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 489 ; 7.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;34.058 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 641 ;13.419 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;12.513 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4550 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 883 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 51 262 D 51 262 6114 0.100 0.050 REMARK 3 2 B 255 282 E 255 282 738 0.050 0.050 REMARK 3 3 C 1 11 F 1 11 190 0.180 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CNA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300017917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.02600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.11000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MZF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE PH 6.5, 35% REMARK 280 PEG3350, 5% GLYCEROL, 2% BENZAMIDINE HYDROCHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.59200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 196 REMARK 465 ASN A 197 REMARK 465 ASP A 198 REMARK 465 SER A 199 REMARK 465 PRO A 200 REMARK 465 PRO A 201 REMARK 465 ALA A 202 REMARK 465 GLU A 203 REMARK 465 ASN D 197 REMARK 465 ASP D 198 REMARK 465 SER D 199 REMARK 465 PRO D 200 REMARK 465 PRO D 201 REMARK 465 ALA D 202 REMARK 465 GLU E 254 REMARK 465 GLY C 12 REMARK 465 GLY F 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 51 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 227 CE NZ REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 470 GLN B 283 CG CD OE1 NE2 REMARK 470 ARG D 51 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 117 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 122 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 148 CE NZ REMARK 470 SER D 196 OG REMARK 470 GLU D 203 CG CD OE1 OE2 REMARK 470 ARG D 204 CD NE CZ NH1 NH2 REMARK 470 LYS D 222 CE NZ REMARK 470 GLU D 223 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 57 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 MET D 231 CG - SD - CE ANGL. DEV. = -20.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 83 84.87 -156.26 REMARK 500 VAL A 161 -50.44 72.67 REMARK 500 ASP A 173 83.81 -159.84 REMARK 500 PRO A 174 45.18 -85.39 REMARK 500 ARG B 263 20.54 -147.96 REMARK 500 ASN D 83 83.80 -152.91 REMARK 500 VAL D 161 -51.70 70.97 REMARK 500 ASP D 173 86.03 -160.44 REMARK 500 PRO D 174 42.51 -84.57 REMARK 500 ARG E 263 19.43 -145.99 REMARK 500 M3L C 9 150.37 -49.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 7CNA A 51 262 UNP Q9Y657 SPIN1_HUMAN 51 262 DBREF 7CNA B 254 283 UNP Q9BUA3 SPNDC_HUMAN 254 283 DBREF 7CNA D 51 262 UNP Q9Y657 SPIN1_HUMAN 51 262 DBREF 7CNA E 254 283 UNP Q9BUA3 SPNDC_HUMAN 254 283 DBREF 7CNA C 1 12 PDB 7CNA 7CNA 1 12 DBREF 7CNA F 1 12 PDB 7CNA 7CNA 1 12 SEQRES 1 A 212 ARG ASN ILE VAL GLY CYS ARG ILE GLN HIS GLY TRP LYS SEQRES 2 A 212 GLU GLY ASN GLY PRO VAL THR GLN TRP LYS GLY THR VAL SEQRES 3 A 212 LEU ASP GLN VAL PRO VAL ASN PRO SER LEU TYR LEU ILE SEQRES 4 A 212 LYS TYR ASP GLY PHE ASP CYS VAL TYR GLY LEU GLU LEU SEQRES 5 A 212 ASN LYS ASP GLU ARG VAL SER ALA LEU GLU VAL LEU PRO SEQRES 6 A 212 ASP ARG VAL ALA THR SER ARG ILE SER ASP ALA HIS LEU SEQRES 7 A 212 ALA ASP THR MET ILE GLY LYS ALA VAL GLU HIS MET PHE SEQRES 8 A 212 GLU THR GLU ASP GLY SER LYS ASP GLU TRP ARG GLY MET SEQRES 9 A 212 VAL LEU ALA ARG ALA PRO VAL MET ASN THR TRP PHE TYR SEQRES 10 A 212 ILE THR TYR GLU LYS ASP PRO VAL LEU TYR MET TYR GLN SEQRES 11 A 212 LEU LEU ASP ASP TYR LYS GLU GLY ASP LEU ARG ILE MET SEQRES 12 A 212 PRO ASP SER ASN ASP SER PRO PRO ALA GLU ARG GLU PRO SEQRES 13 A 212 GLY GLU VAL VAL ASP SER LEU VAL GLY LYS GLN VAL GLU SEQRES 14 A 212 TYR ALA LYS GLU ASP GLY SER LYS ARG THR GLY MET VAL SEQRES 15 A 212 ILE HIS GLN VAL GLU ALA LYS PRO SER VAL TYR PHE ILE SEQRES 16 A 212 LYS PHE ASP ASP ASP PHE HIS ILE TYR VAL TYR ASP LEU SEQRES 17 A 212 VAL LYS THR SER SEQRES 1 B 30 GLU THR PHE ALA ALA PRO ALA GLU VAL ARG HIS PHE THR SEQRES 2 B 30 ASP GLY SER PHE PRO ALA GLY PHE VAL LEU GLN LEU PHE SEQRES 3 B 30 SER HIS THR GLN SEQRES 1 D 212 ARG ASN ILE VAL GLY CYS ARG ILE GLN HIS GLY TRP LYS SEQRES 2 D 212 GLU GLY ASN GLY PRO VAL THR GLN TRP LYS GLY THR VAL SEQRES 3 D 212 LEU ASP GLN VAL PRO VAL ASN PRO SER LEU TYR LEU ILE SEQRES 4 D 212 LYS TYR ASP GLY PHE ASP CYS VAL TYR GLY LEU GLU LEU SEQRES 5 D 212 ASN LYS ASP GLU ARG VAL SER ALA LEU GLU VAL LEU PRO SEQRES 6 D 212 ASP ARG VAL ALA THR SER ARG ILE SER ASP ALA HIS LEU SEQRES 7 D 212 ALA ASP THR MET ILE GLY LYS ALA VAL GLU HIS MET PHE SEQRES 8 D 212 GLU THR GLU ASP GLY SER LYS ASP GLU TRP ARG GLY MET SEQRES 9 D 212 VAL LEU ALA ARG ALA PRO VAL MET ASN THR TRP PHE TYR SEQRES 10 D 212 ILE THR TYR GLU LYS ASP PRO VAL LEU TYR MET TYR GLN SEQRES 11 D 212 LEU LEU ASP ASP TYR LYS GLU GLY ASP LEU ARG ILE MET SEQRES 12 D 212 PRO ASP SER ASN ASP SER PRO PRO ALA GLU ARG GLU PRO SEQRES 13 D 212 GLY GLU VAL VAL ASP SER LEU VAL GLY LYS GLN VAL GLU SEQRES 14 D 212 TYR ALA LYS GLU ASP GLY SER LYS ARG THR GLY MET VAL SEQRES 15 D 212 ILE HIS GLN VAL GLU ALA LYS PRO SER VAL TYR PHE ILE SEQRES 16 D 212 LYS PHE ASP ASP ASP PHE HIS ILE TYR VAL TYR ASP LEU SEQRES 17 D 212 VAL LYS THR SER SEQRES 1 E 30 GLU THR PHE ALA ALA PRO ALA GLU VAL ARG HIS PHE THR SEQRES 2 E 30 ASP GLY SER PHE PRO ALA GLY PHE VAL LEU GLN LEU PHE SEQRES 3 E 30 SER HIS THR GLN SEQRES 1 C 12 ALA ARG THR M3L GLN THR ALA ARG M3L SER THR GLY SEQRES 1 F 12 ALA ARG THR M3L GLN THR ALA ARG M3L SER GLY GLY HET M3L C 4 12 HET M3L C 9 12 HET M3L F 4 12 HET M3L F 9 12 HET BEN A 301 9 HET BEN A 302 9 HET CL A 303 1 HET BEN D 301 9 HET BEN D 302 9 HET BEN D 303 9 HET CL D 304 1 HET GOL E 301 6 HET CL E 302 1 HET BEN C 101 9 HETNAM M3L N-TRIMETHYLLYSINE HETNAM BEN BENZAMIDINE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 M3L 4(C9 H21 N2 O2 1+) FORMUL 7 BEN 6(C7 H8 N2) FORMUL 9 CL 3(CL 1-) FORMUL 14 GOL C3 H8 O3 FORMUL 17 HOH *283(H2 O) HELIX 1 AA1 ASP A 125 ILE A 133 1 9 HELIX 2 AA2 GLN A 180 GLU A 187 1 8 HELIX 3 AA3 GLU A 205 VAL A 210 1 6 HELIX 4 AA4 ASP D 125 ILE D 133 1 9 HELIX 5 AA5 GLN D 180 GLU D 187 1 8 HELIX 6 AA6 GLU D 205 VAL D 210 1 6 HELIX 7 AA7 THR C 3 ALA C 7 5 5 HELIX 8 AA8 THR F 3 ALA F 7 5 5 SHEET 1 AA1 5 VAL A 97 LEU A 100 0 SHEET 2 AA1 5 TYR A 87 TYR A 91 -1 N ILE A 89 O TYR A 98 SHEET 3 AA1 5 VAL A 69 GLN A 79 -1 N LEU A 77 O LEU A 88 SHEET 4 AA1 5 ARG A 57 LYS A 63 -1 N TRP A 62 O THR A 70 SHEET 5 AA1 5 VAL A 108 VAL A 113 -1 O GLU A 112 N GLN A 59 SHEET 1 AA2 5 ASP A 173 TYR A 179 0 SHEET 2 AA2 5 PHE A 166 TYR A 170 -1 N ILE A 168 O TYR A 177 SHEET 3 AA2 5 LYS A 148 ARG A 158 -1 N LEU A 156 O TYR A 167 SHEET 4 AA2 5 ALA A 136 GLU A 142 -1 N PHE A 141 O ASP A 149 SHEET 5 AA2 5 LEU A 190 ILE A 192 -1 O ARG A 191 N GLU A 138 SHEET 1 AA3 7 GLU B 261 VAL B 262 0 SHEET 2 AA3 7 PHE B 274 LEU B 278 -1 O LEU B 276 N VAL B 262 SHEET 3 AA3 7 TYR A 254 LYS A 260 -1 N VAL A 259 O VAL B 275 SHEET 4 AA3 7 VAL A 242 PHE A 247 -1 N TYR A 243 O TYR A 256 SHEET 5 AA3 7 LYS A 227 GLN A 235 -1 N HIS A 234 O PHE A 244 SHEET 6 AA3 7 GLN A 217 ALA A 221 -1 N TYR A 220 O ARG A 228 SHEET 7 AA3 7 HIS B 264 PHE B 265 -1 O HIS B 264 N GLU A 219 SHEET 1 AA4 5 VAL D 97 LEU D 100 0 SHEET 2 AA4 5 TYR D 87 TYR D 91 -1 N ILE D 89 O TYR D 98 SHEET 3 AA4 5 VAL D 69 GLN D 79 -1 N LEU D 77 O LEU D 88 SHEET 4 AA4 5 ARG D 57 LYS D 63 -1 N TRP D 62 O THR D 70 SHEET 5 AA4 5 VAL D 108 VAL D 113 -1 O SER D 109 N GLY D 61 SHEET 1 AA5 5 ASP D 173 TYR D 179 0 SHEET 2 AA5 5 PHE D 166 TYR D 170 -1 N ILE D 168 O TYR D 177 SHEET 3 AA5 5 LYS D 148 ARG D 158 -1 N LEU D 156 O TYR D 167 SHEET 4 AA5 5 ALA D 136 GLU D 142 -1 N PHE D 141 O ASP D 149 SHEET 5 AA5 5 LEU D 190 ILE D 192 -1 O ARG D 191 N GLU D 138 SHEET 1 AA6 6 GLN D 217 ALA D 221 0 SHEET 2 AA6 6 LYS D 227 GLN D 235 -1 O ARG D 228 N TYR D 220 SHEET 3 AA6 6 VAL D 242 PHE D 247 -1 O PHE D 244 N HIS D 234 SHEET 4 AA6 6 TYR D 254 LYS D 260 -1 O TYR D 256 N TYR D 243 SHEET 5 AA6 6 PHE E 274 LEU E 278 -1 O GLN E 277 N ASP D 257 SHEET 6 AA6 6 GLU E 261 VAL E 262 -1 N VAL E 262 O LEU E 276 LINK C THR C 3 N M3L C 4 1555 1555 1.34 LINK C M3L C 4 N GLN C 5 1555 1555 1.33 LINK C ARG C 8 N M3L C 9 1555 1555 1.34 LINK C M3L C 9 N SER C 10 1555 1555 1.34 LINK C THR F 3 N M3L F 4 1555 1555 1.33 LINK C M3L F 4 N GLN F 5 1555 1555 1.33 LINK C ARG F 8 N M3L F 9 1555 1555 1.34 LINK C M3L F 9 N SER F 10 1555 1555 1.34 CRYST1 45.603 101.184 56.615 90.00 91.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021928 0.000000 0.000539 0.00000 SCALE2 0.000000 0.009883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017669 0.00000