HEADER LYASE 03-AUG-20 7CNW TITLE CRYSTAL STRUCTURE OF APO PSD FROM E. COLI (1.90 A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLSERINE DECARBOXYLASE BETA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 EC: 4.1.1.65; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PHOSPHATIDYLSERINE DECARBOXYLASE ALPHA CHAIN; COMPND 8 CHAIN: B, D; COMPND 9 EC: 4.1.1.65; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PSD, FAZ83_09855; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: PSD, FAZ83_09855; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PHOSPHATIDYLSERINE DECARBOXYLASE, PYRUVOYL-DEPENDENT DECARBOXYLASE, KEYWDS 2 AUTO-CLEAVED, SERINE PROTEASE, MEMBRANE PROTEIN, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KIM,G.CHO REVDAT 2 15-NOV-23 7CNW 1 LINK ATOM REVDAT 1 24-MAR-21 7CNW 0 JRNL AUTH G.CHO,E.LEE,J.KIM JRNL TITL STRUCTURAL INSIGHTS INTO PHOSPHATIDYLETHANOLAMINE FORMATION JRNL TITL 2 IN BACTERIAL MEMBRANE BIOGENESIS. JRNL REF SCI REP V. 11 5785 2021 JRNL REFN ESSN 2045-2322 JRNL PMID 33707636 JRNL DOI 10.1038/S41598-021-85195-5 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 67965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3593 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4346 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4445 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.11000 REMARK 3 B22 (A**2) : 2.23000 REMARK 3 B33 (A**2) : -1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.333 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4644 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4417 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6314 ; 1.579 ; 1.669 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10211 ; 1.291 ; 1.599 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 7.016 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;31.969 ;21.402 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 755 ;14.152 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;14.309 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5046 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 969 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 252 C 4 252 7712 0.090 0.050 REMARK 3 2 B 255 287 D 255 287 683 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CNW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300016715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71625 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 2.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.3, 28% W/V PEGMME REMARK 280 2000, 5% W/V 1.6-HEXANEDIOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.72150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.54450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.90850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.54450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.72150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.90850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 288 REMARK 465 HIS B 289 REMARK 465 HIS B 290 REMARK 465 HIS B 291 REMARK 465 HIS B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 GLY B 295 REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 ASN C 3 REMARK 465 GLY D 288 REMARK 465 HIS D 289 REMARK 465 HIS D 290 REMARK 465 HIS D 291 REMARK 465 HIS D 292 REMARK 465 HIS D 293 REMARK 465 HIS D 294 REMARK 465 GLY D 295 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 ASP A 56 CG OD1 OD2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 ASP A 81 CG OD1 OD2 REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 GLN B 270 CG CD OE1 NE2 REMARK 470 ARG C 29 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 43 CG CD CE NZ REMARK 470 LYS C 50 CG CD CE NZ REMARK 470 GLU C 74 CG CD OE1 OE2 REMARK 470 ASP C 81 CG OD1 OD2 REMARK 470 LYS C 108 CG CD CE NZ REMARK 470 GLU D 269 CG CD OE1 OE2 REMARK 470 GLN D 270 CG CD OE1 NE2 REMARK 470 GLU D 272 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 181 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 PYR D 254 O - C - N ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 101 -106.09 60.66 REMARK 500 ILE A 205 -59.89 78.05 REMARK 500 LEU B 274 2.42 86.02 REMARK 500 GLU C 101 -105.15 61.02 REMARK 500 ILE C 205 -59.51 75.49 REMARK 500 ALA C 232 158.96 -48.54 REMARK 500 LEU D 274 2.08 85.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PYR B 254 10.19 REMARK 500 PYR D 254 24.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LMT A 301 REMARK 610 LMT C 301 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 25 O REMARK 620 2 LYS A 28 O 103.3 REMARK 620 N 1 DBREF1 7CNW A 1 253 UNP A0A6D2XQZ0_ECOLI DBREF2 7CNW A A0A6D2XQZ0 1 253 DBREF1 7CNW B 254 287 UNP A0A6D2XQZ0_ECOLI DBREF2 7CNW B A0A6D2XQZ0 254 287 DBREF1 7CNW C 1 253 UNP A0A6D2XQZ0_ECOLI DBREF2 7CNW C A0A6D2XQZ0 1 253 DBREF1 7CNW D 254 287 UNP A0A6D2XQZ0_ECOLI DBREF2 7CNW D A0A6D2XQZ0 254 287 SEQADV 7CNW PYR B 254 UNP A0A6D2XQZ SER 254 MODIFIED RESIDUE SEQADV 7CNW GLY B 288 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS B 289 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS B 290 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS B 291 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS B 292 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS B 293 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS B 294 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW GLY B 295 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW PYR D 254 UNP A0A6D2XQZ SER 254 MODIFIED RESIDUE SEQADV 7CNW GLY D 288 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS D 289 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS D 290 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS D 291 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS D 292 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS D 293 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW HIS D 294 UNP A0A6D2XQZ EXPRESSION TAG SEQADV 7CNW GLY D 295 UNP A0A6D2XQZ EXPRESSION TAG SEQRES 1 A 253 MET LEU ASN SER PHE LYS LEU SER LEU GLN TYR ILE LEU SEQRES 2 A 253 PRO LYS LEU TRP LEU THR ARG LEU ALA GLY TRP GLY ALA SEQRES 3 A 253 SER LYS ARG ALA GLY TRP LEU THR LYS LEU VAL ILE ASP SEQRES 4 A 253 LEU PHE VAL LYS TYR TYR LYS VAL ASP MET LYS GLU ALA SEQRES 5 A 253 GLN LYS PRO ASP THR ALA SER TYR ARG THR PHE ASN GLU SEQRES 6 A 253 PHE PHE VAL ARG PRO LEU ARG ASP GLU VAL ARG PRO ILE SEQRES 7 A 253 ASP THR ASP PRO ASN VAL LEU VAL MET PRO ALA ASP GLY SEQRES 8 A 253 VAL ILE SER GLN LEU GLY LYS ILE GLU GLU ASP LYS ILE SEQRES 9 A 253 LEU GLN ALA LYS GLY HIS ASN TYR SER LEU GLU ALA LEU SEQRES 10 A 253 LEU ALA GLY ASN TYR LEU MET ALA ASP LEU PHE ARG ASN SEQRES 11 A 253 GLY THR PHE VAL THR THR TYR LEU SER PRO ARG ASP TYR SEQRES 12 A 253 HIS ARG VAL HIS MET PRO CYS ASN GLY ILE LEU ARG GLU SEQRES 13 A 253 MET ILE TYR VAL PRO GLY ASP LEU PHE SER VAL ASN HIS SEQRES 14 A 253 LEU THR ALA GLN ASN VAL PRO ASN LEU PHE ALA ARG ASN SEQRES 15 A 253 GLU ARG VAL ILE CYS LEU PHE ASP THR GLU PHE GLY PRO SEQRES 16 A 253 MET ALA GLN ILE LEU VAL GLY ALA THR ILE VAL GLY SER SEQRES 17 A 253 ILE GLU THR VAL TRP ALA GLY THR ILE THR PRO PRO ARG SEQRES 18 A 253 GLU GLY ILE ILE LYS ARG TRP THR TRP PRO ALA GLY GLU SEQRES 19 A 253 ASN ASP GLY SER VAL ALA LEU LEU LYS GLY GLN GLU MET SEQRES 20 A 253 GLY ARG PHE LYS LEU GLY SEQRES 1 B 42 PYR THR VAL ILE ASN LEU PHE ALA PRO GLY LYS VAL ASN SEQRES 2 B 42 LEU VAL GLU GLN LEU GLU SER LEU SER VAL THR LYS ILE SEQRES 3 B 42 GLY GLN PRO LEU ALA VAL SER THR GLY HIS HIS HIS HIS SEQRES 4 B 42 HIS HIS GLY SEQRES 1 C 253 MET LEU ASN SER PHE LYS LEU SER LEU GLN TYR ILE LEU SEQRES 2 C 253 PRO LYS LEU TRP LEU THR ARG LEU ALA GLY TRP GLY ALA SEQRES 3 C 253 SER LYS ARG ALA GLY TRP LEU THR LYS LEU VAL ILE ASP SEQRES 4 C 253 LEU PHE VAL LYS TYR TYR LYS VAL ASP MET LYS GLU ALA SEQRES 5 C 253 GLN LYS PRO ASP THR ALA SER TYR ARG THR PHE ASN GLU SEQRES 6 C 253 PHE PHE VAL ARG PRO LEU ARG ASP GLU VAL ARG PRO ILE SEQRES 7 C 253 ASP THR ASP PRO ASN VAL LEU VAL MET PRO ALA ASP GLY SEQRES 8 C 253 VAL ILE SER GLN LEU GLY LYS ILE GLU GLU ASP LYS ILE SEQRES 9 C 253 LEU GLN ALA LYS GLY HIS ASN TYR SER LEU GLU ALA LEU SEQRES 10 C 253 LEU ALA GLY ASN TYR LEU MET ALA ASP LEU PHE ARG ASN SEQRES 11 C 253 GLY THR PHE VAL THR THR TYR LEU SER PRO ARG ASP TYR SEQRES 12 C 253 HIS ARG VAL HIS MET PRO CYS ASN GLY ILE LEU ARG GLU SEQRES 13 C 253 MET ILE TYR VAL PRO GLY ASP LEU PHE SER VAL ASN HIS SEQRES 14 C 253 LEU THR ALA GLN ASN VAL PRO ASN LEU PHE ALA ARG ASN SEQRES 15 C 253 GLU ARG VAL ILE CYS LEU PHE ASP THR GLU PHE GLY PRO SEQRES 16 C 253 MET ALA GLN ILE LEU VAL GLY ALA THR ILE VAL GLY SER SEQRES 17 C 253 ILE GLU THR VAL TRP ALA GLY THR ILE THR PRO PRO ARG SEQRES 18 C 253 GLU GLY ILE ILE LYS ARG TRP THR TRP PRO ALA GLY GLU SEQRES 19 C 253 ASN ASP GLY SER VAL ALA LEU LEU LYS GLY GLN GLU MET SEQRES 20 C 253 GLY ARG PHE LYS LEU GLY SEQRES 1 D 42 PYR THR VAL ILE ASN LEU PHE ALA PRO GLY LYS VAL ASN SEQRES 2 D 42 LEU VAL GLU GLN LEU GLU SER LEU SER VAL THR LYS ILE SEQRES 3 D 42 GLY GLN PRO LEU ALA VAL SER THR GLY HIS HIS HIS HIS SEQRES 4 D 42 HIS HIS GLY HET PYR B 254 5 HET PYR D 254 5 HET LMT A 301 25 HET LMT A 302 35 HET NA A 303 1 HET NA A 304 1 HET LMT C 301 26 HETNAM PYR PYRUVIC ACID HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM NA SODIUM ION FORMUL 2 PYR 2(C3 H4 O3) FORMUL 5 LMT 3(C24 H46 O11) FORMUL 7 NA 2(NA 1+) FORMUL 10 HOH *179(H2 O) HELIX 1 AA1 SER A 4 LEU A 13 1 10 HELIX 2 AA2 PRO A 14 SER A 27 1 14 HELIX 3 AA3 GLY A 31 LYS A 46 1 16 HELIX 4 AA4 ASP A 48 ALA A 52 5 5 HELIX 5 AA5 ASP A 56 TYR A 60 5 5 HELIX 6 AA6 THR A 62 VAL A 68 1 7 HELIX 7 AA7 ARG A 72 ARG A 76 5 5 HELIX 8 AA8 LEU A 114 LEU A 118 1 5 HELIX 9 AA9 ASN A 121 LEU A 127 1 7 HELIX 10 AB1 ASN A 168 VAL A 175 1 8 HELIX 11 AB2 ASN A 177 ASN A 182 1 6 HELIX 12 AB3 PHE C 5 LEU C 13 1 9 HELIX 13 AB4 PRO C 14 SER C 27 1 14 HELIX 14 AB5 ALA C 30 LYS C 46 1 17 HELIX 15 AB6 ASP C 48 ALA C 52 5 5 HELIX 16 AB7 ASP C 56 TYR C 60 5 5 HELIX 17 AB8 THR C 62 VAL C 68 1 7 HELIX 18 AB9 ARG C 72 ARG C 76 5 5 HELIX 19 AC1 LEU C 114 LEU C 118 1 5 HELIX 20 AC2 ASN C 121 LEU C 127 1 7 HELIX 21 AC3 ASN C 168 VAL C 175 1 8 HELIX 22 AC4 ASN C 177 ASN C 182 1 6 SHEET 1 AA1 3 VAL A 84 VAL A 86 0 SHEET 2 AA1 3 PRO B 282 SER B 286 -1 O LEU B 283 N LEU A 85 SHEET 3 AA1 3 VAL B 265 LEU B 267 -1 N ASN B 266 O VAL B 285 SHEET 1 AA2 3 LYS A 226 THR A 229 0 SHEET 2 AA2 3 GLY A 152 VAL A 160 -1 N TYR A 159 O LYS A 226 SHEET 3 AA2 3 VAL A 239 LEU A 241 -1 O LEU A 241 N GLY A 152 SHEET 1 AA3 8 LYS A 226 THR A 229 0 SHEET 2 AA3 8 GLY A 152 VAL A 160 -1 N TYR A 159 O LYS A 226 SHEET 3 AA3 8 ARG A 184 THR A 191 -1 O ILE A 186 N ILE A 158 SHEET 4 AA3 8 GLY A 194 VAL A 201 -1 O MET A 196 N PHE A 189 SHEET 5 AA3 8 VAL B 256 PHE B 260 -1 O ILE B 257 N ILE A 199 SHEET 6 AA3 8 THR A 132 TYR A 137 -1 N THR A 136 O VAL B 256 SHEET 7 AA3 8 GLY A 91 LYS A 98 -1 N SER A 94 O THR A 135 SHEET 8 AA3 8 VAL B 276 THR B 277 -1 O THR B 277 N GLY A 91 SHEET 1 AA4 2 LYS A 103 ALA A 107 0 SHEET 2 AA4 2 HIS A 110 SER A 113 -1 O HIS A 110 N GLN A 106 SHEET 1 AA5 4 ARG A 145 HIS A 147 0 SHEET 2 AA5 4 GLU A 246 LYS A 251 -1 O MET A 247 N VAL A 146 SHEET 3 AA5 4 SER A 208 THR A 211 -1 N GLU A 210 O ARG A 249 SHEET 4 AA5 4 GLY A 215 THR A 218 -1 O ILE A 217 N ILE A 209 SHEET 1 AA6 3 VAL C 84 VAL C 86 0 SHEET 2 AA6 3 PRO D 282 SER D 286 -1 O LEU D 283 N LEU C 85 SHEET 3 AA6 3 VAL D 265 LEU D 267 -1 N ASN D 266 O VAL D 285 SHEET 1 AA7 3 LYS C 226 THR C 229 0 SHEET 2 AA7 3 GLY C 152 VAL C 160 -1 N TYR C 159 O LYS C 226 SHEET 3 AA7 3 VAL C 239 LEU C 241 -1 O LEU C 241 N GLY C 152 SHEET 1 AA8 8 LYS C 226 THR C 229 0 SHEET 2 AA8 8 GLY C 152 VAL C 160 -1 N TYR C 159 O LYS C 226 SHEET 3 AA8 8 ARG C 184 THR C 191 -1 O LEU C 188 N ARG C 155 SHEET 4 AA8 8 GLY C 194 VAL C 201 -1 O MET C 196 N PHE C 189 SHEET 5 AA8 8 VAL D 256 PHE D 260 -1 O ILE D 257 N ILE C 199 SHEET 6 AA8 8 THR C 132 TYR C 137 -1 N THR C 136 O VAL D 256 SHEET 7 AA8 8 GLY C 91 LYS C 98 -1 N SER C 94 O THR C 135 SHEET 8 AA8 8 VAL D 276 THR D 277 -1 O THR D 277 N GLY C 91 SHEET 1 AA9 2 LYS C 103 ALA C 107 0 SHEET 2 AA9 2 HIS C 110 SER C 113 -1 O HIS C 110 N GLN C 106 SHEET 1 AB1 4 ARG C 145 HIS C 147 0 SHEET 2 AB1 4 GLU C 246 LYS C 251 -1 O MET C 247 N VAL C 146 SHEET 3 AB1 4 SER C 208 THR C 211 -1 N GLU C 210 O ARG C 249 SHEET 4 AB1 4 GLY C 215 THR C 218 -1 O ILE C 217 N ILE C 209 LINK C PYR B 254 N THR B 255 1555 1555 1.35 LINK C PYR D 254 N THR D 255 1555 1555 1.37 LINK O GLY A 25 NA NA A 303 1555 1555 2.75 LINK O LYS A 28 NA NA A 303 1555 1555 2.66 CISPEP 1 THR A 218 PRO A 219 0 -5.58 CISPEP 2 PRO A 219 PRO A 220 0 -6.17 CISPEP 3 THR C 218 PRO C 219 0 -3.86 CISPEP 4 PRO C 219 PRO C 220 0 2.58 CRYST1 77.443 79.817 147.089 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012913 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006799 0.00000