HEADER PROTEIN BINDING 08-AUG-20 7CQ1 TITLE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF MYCOBACTERIUM TITLE 2 TUBERCULOSIS RIBOSOME MATURATION FACTOR PROTEIN RIMM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME MATURATION FACTOR RIMM; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: RIMM, RV2907C, MTCY274.38C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS RIBOSOME MATURATION, 30S SUBUNIT, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.ZHANG,D.LIN REVDAT 5 15-MAY-24 7CQ1 1 REMARK REVDAT 4 14-JUN-23 7CQ1 1 REMARK REVDAT 3 19-MAY-21 7CQ1 1 JRNL REVDAT 2 28-APR-21 7CQ1 1 JRNL REVDAT 1 31-MAR-21 7CQ1 0 JRNL AUTH H.ZHANG,Q.ZHOU,C.GUO,L.FENG,H.WANG,X.LIAO,D.LIN JRNL TITL STRUCTURAL BASIS FOR THE C-TERMINAL DOMAIN OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS RIBOSOME MATURATION FACTOR RIMM TO BIND JRNL TITL 3 RIBOSOMAL PROTEIN S19. JRNL REF BIOMOLECULES V. 11 2021 JRNL REFN ESSN 2218-273X JRNL PMID 33919647 JRNL DOI 10.3390/BIOM11040597 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS ARIA2, CNS ARIA2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CQ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300017932. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM C-TERMINAL DOMAIN OF REMARK 210 RIBOSOME MATURATION FACTOR RIMM, REMARK 210 20 MM POTASSIUM PHOSPHATE, 100 REMARK 210 MM POTASSIUM CHLORIDE, 0.02 % W/ REMARK 210 V SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.6 MM [U-99% 15N] C-TERMINAL REMARK 210 DOMAIN OF RIBOSOME MATURATION REMARK 210 FACTOR RIMM, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 100 MM POTASSIUM REMARK 210 CHLORIDE, 0.02 % W/V SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 0.6 MM REMARK 210 [U-99% 13C; U-99% 15N] C- REMARK 210 TERMINAL DOMAIN OF RIBOSOME REMARK 210 MATURATION FACTOR RIMM, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 100 MM REMARK 210 POTASSIUM CHLORIDE, 0.02 % W/V REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HCCH-COSY; 3D H(CCO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 C(CO)NH; 3D 15N-EDITED NOESY- REMARK 210 HSQC; 3D 13C-EDITED NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRFAM-SPARKY 1.4.7 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 78 REMARK 465 GLU A 79 REMARK 465 HIS A 80 REMARK 465 HIS A 81 REMARK 465 HIS A 82 REMARK 465 HIS A 83 REMARK 465 HIS A 84 REMARK 465 HIS A 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 30 99.81 -68.23 REMARK 500 1 ASP A 44 -145.97 -137.01 REMARK 500 1 HIS A 71 -117.09 40.22 REMARK 500 1 LEU A 74 6.35 -62.27 REMARK 500 1 LEU A 76 155.70 63.46 REMARK 500 2 HIS A 30 99.48 -68.41 REMARK 500 2 ASP A 44 -116.68 -171.85 REMARK 500 2 HIS A 71 -122.91 50.71 REMARK 500 2 LEU A 74 5.85 -61.47 REMARK 500 2 LEU A 76 154.81 63.73 REMARK 500 3 ASP A 44 -156.34 -126.42 REMARK 500 3 HIS A 71 -121.69 50.43 REMARK 500 3 LEU A 74 3.40 -60.73 REMARK 500 3 LEU A 76 163.67 60.86 REMARK 500 4 ASP A 2 -69.64 -168.91 REMARK 500 4 THR A 3 150.93 65.99 REMARK 500 4 HIS A 30 99.71 -68.29 REMARK 500 4 ASP A 44 -141.57 -137.37 REMARK 500 4 HIS A 71 -122.10 48.18 REMARK 500 4 LEU A 74 6.49 -61.76 REMARK 500 4 LEU A 76 154.53 62.87 REMARK 500 5 HIS A 30 99.53 -68.34 REMARK 500 5 ASP A 44 -148.30 -126.94 REMARK 500 5 HIS A 71 -120.94 48.27 REMARK 500 5 LEU A 74 5.97 -61.14 REMARK 500 5 LEU A 76 157.72 62.99 REMARK 500 6 HIS A 30 99.97 -68.54 REMARK 500 6 ASP A 44 -155.86 -125.80 REMARK 500 6 HIS A 71 -122.02 47.79 REMARK 500 6 LEU A 74 6.77 -62.75 REMARK 500 6 LEU A 76 161.36 60.97 REMARK 500 7 ASP A 2 -67.76 -136.04 REMARK 500 7 THR A 3 84.82 57.76 REMARK 500 7 HIS A 30 99.89 -68.23 REMARK 500 7 ASP A 44 -152.71 -127.29 REMARK 500 7 HIS A 71 -122.69 48.25 REMARK 500 7 LEU A 74 6.99 -62.80 REMARK 500 7 LEU A 76 164.46 61.10 REMARK 500 8 HIS A 30 99.81 -68.12 REMARK 500 8 ASP A 44 -150.44 -129.63 REMARK 500 8 HIS A 71 -124.17 49.44 REMARK 500 8 LEU A 74 6.75 -61.79 REMARK 500 8 LEU A 76 168.78 60.67 REMARK 500 9 HIS A 30 99.90 -67.77 REMARK 500 9 ASP A 44 -147.80 -132.80 REMARK 500 9 HIS A 71 -121.44 46.53 REMARK 500 9 LEU A 74 -3.63 -52.62 REMARK 500 9 ASN A 75 -166.41 -100.51 REMARK 500 9 LEU A 76 159.39 -44.44 REMARK 500 10 HIS A 30 99.65 -68.13 REMARK 500 REMARK 500 THIS ENTRY HAS 107 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36368 RELATED DB: BMRB REMARK 900 C-TERMINAL DOMAIN OF MYCOBACTERIUM TUBERCULOSIS RIMM DBREF 7CQ1 A 2 77 UNP P9WH19 RIMM_MYCTU 101 176 SEQADV 7CQ1 MET A 1 UNP P9WH19 INITIATING METHIONINE SEQADV 7CQ1 LEU A 78 UNP P9WH19 EXPRESSION TAG SEQADV 7CQ1 GLU A 79 UNP P9WH19 EXPRESSION TAG SEQADV 7CQ1 HIS A 80 UNP P9WH19 EXPRESSION TAG SEQADV 7CQ1 HIS A 81 UNP P9WH19 EXPRESSION TAG SEQADV 7CQ1 HIS A 82 UNP P9WH19 EXPRESSION TAG SEQADV 7CQ1 HIS A 83 UNP P9WH19 EXPRESSION TAG SEQADV 7CQ1 HIS A 84 UNP P9WH19 EXPRESSION TAG SEQADV 7CQ1 HIS A 85 UNP P9WH19 EXPRESSION TAG SEQRES 1 A 85 MET ASP THR TYR TYR ASP HIS GLN LEU VAL GLY LEU MET SEQRES 2 A 85 VAL GLN THR ALA THR GLY GLU GLY VAL GLY VAL VAL THR SEQRES 3 A 85 GLU VAL VAL HIS THR ALA ALA GLY GLU LEU LEU ALA VAL SEQRES 4 A 85 LYS ARG ASP SER ASP GLU VAL LEU VAL PRO PHE VAL ARG SEQRES 5 A 85 ALA ILE VAL THR SER VAL SER LEU ASP ASP GLY ILE VAL SEQRES 6 A 85 GLU ILE ASP PRO PRO HIS GLY LEU LEU ASN LEU GLU LEU SEQRES 7 A 85 GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 TYR A 5 VAL A 10 1 6 SHEET 1 AA1 6 GLU A 45 PHE A 50 0 SHEET 2 AA1 6 GLU A 35 LYS A 40 -1 N VAL A 39 O VAL A 46 SHEET 3 AA1 6 GLY A 23 GLU A 27 -1 N THR A 26 O ALA A 38 SHEET 4 AA1 6 MET A 13 THR A 16 -1 N VAL A 14 O GLY A 23 SHEET 5 AA1 6 ILE A 64 ILE A 67 1 O VAL A 65 N MET A 13 SHEET 6 AA1 6 SER A 57 SER A 59 -1 N SER A 57 O GLU A 66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1