HEADER HYDROLASE 08-AUG-20 7CQ2 TITLE CRYSTAL STRUCTURE OF SLX1-SLX4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS.; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SLX4 ISOFORM 1; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN YJM789); SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 307796; SOURCE 5 STRAIN: YJM789; SOURCE 6 GENE: SLX1, SCY_0436; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCDF-DUET; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 GENE: SLX4, GI526_G0003928; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PCDF-DUET KEYWDS ENDONUCLEASE COMPLEX, HOLLIDAY JUNCTION, SLX1-SLX4, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.XU,M.WANG,J.SUN,G.LI,N.YANG,R.M.XU REVDAT 2 29-DEC-21 7CQ2 1 JRNL REVDAT 1 16-JUN-21 7CQ2 0 JRNL AUTH X.XU,M.WANG,J.SUN,Z.YU,G.LI,N.YANG,R.M.XU JRNL TITL STRUCTURE SPECIFIC DNA RECOGNITION BY THE SLX1-SLX4 JRNL TITL 2 ENDONUCLEASE COMPLEX. JRNL REF NUCLEIC ACIDS RES. V. 49 7740 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34181713 JRNL DOI 10.1093/NAR/GKAB542 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 57417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4000 - 5.3829 0.98 5463 273 0.1913 0.2180 REMARK 3 2 5.3829 - 4.2738 0.97 5389 293 0.1719 0.2363 REMARK 3 3 4.2738 - 3.7340 0.99 5461 301 0.1797 0.2384 REMARK 3 4 3.7340 - 3.3927 0.99 5483 289 0.1849 0.2542 REMARK 3 5 3.3927 - 3.1496 0.99 5486 292 0.2171 0.3008 REMARK 3 6 3.1496 - 2.9640 0.99 5457 338 0.2400 0.3178 REMARK 3 7 2.9640 - 2.8156 0.99 5447 286 0.2293 0.2715 REMARK 3 8 2.8156 - 2.6930 0.98 5449 311 0.2488 0.3281 REMARK 3 9 2.6930 - 2.5894 0.98 5441 263 0.2560 0.3306 REMARK 3 10 2.5894 - 2.5000 0.97 5390 305 0.2636 0.3268 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 37.44 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.76220 REMARK 3 B22 (A**2) : 6.44120 REMARK 3 B33 (A**2) : -18.20340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6111 REMARK 3 ANGLE : 0.740 8214 REMARK 3 CHIRALITY : 0.054 883 REMARK 3 PLANARITY : 0.003 1053 REMARK 3 DIHEDRAL : 13.253 2302 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CQ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58698 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1M SODIUM CACODYLATE TRIHYDRATE, 20% PEG 3350 REMARK 280 AND 0.2 M NDSB-201, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.64200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.48300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.98000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.48300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.64200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.98000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 LYS A 4 REMARK 465 ILE A 5 REMARK 465 GLY A 50 REMARK 465 GLY A 51 REMARK 465 ALA A 52 REMARK 465 TYR A 53 REMARK 465 ARG A 54 REMARK 465 THR A 55 REMARK 465 LYS A 56 REMARK 465 GLU A 96 REMARK 465 LYS A 97 REMARK 465 ASP A 98 REMARK 465 ARG A 99 REMARK 465 VAL A 100 REMARK 465 VAL A 101 REMARK 465 LYS A 102 REMARK 465 HIS A 103 REMARK 465 LYS A 104 REMARK 465 ALA A 105 REMARK 465 GLY A 106 REMARK 465 GLU A 152 REMARK 465 ARG A 153 REMARK 465 ASP A 154 REMARK 465 ARG A 155 REMARK 465 PHE A 156 REMARK 465 GLY A 303 REMARK 465 LYS A 304 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 GLU B 231 REMARK 465 GLN B 232 REMARK 465 GLY B 303 REMARK 465 LYS B 304 REMARK 465 MET C 598 REMARK 465 GLY C 599 REMARK 465 SER C 600 REMARK 465 SER C 601 REMARK 465 HIS C 602 REMARK 465 HIS C 603 REMARK 465 HIS C 604 REMARK 465 HIS C 605 REMARK 465 HIS C 606 REMARK 465 HIS C 607 REMARK 465 SER C 608 REMARK 465 GLN C 609 REMARK 465 SER C 610 REMARK 465 ALA C 611 REMARK 465 ALA C 612 REMARK 465 SER C 613 REMARK 465 SER C 614 REMARK 465 ILE C 615 REMARK 465 ALA C 616 REMARK 465 SER C 617 REMARK 465 PRO C 618 REMARK 465 GLU C 619 REMARK 465 LYS C 620 REMARK 465 PHE C 621 REMARK 465 CYS C 622 REMARK 465 GLU C 623 REMARK 465 ILE C 624 REMARK 465 MET C 625 REMARK 465 MET C 626 REMARK 465 SER C 627 REMARK 465 GLN C 628 REMARK 465 SER C 629 REMARK 465 MET C 630 REMARK 465 LYS C 631 REMARK 465 GLU C 632 REMARK 465 LEU C 633 REMARK 465 ARG C 634 REMARK 465 GLN C 635 REMARK 465 SER C 636 REMARK 465 LEU C 637 REMARK 465 LYS C 638 REMARK 465 THR C 639 REMARK 465 VAL C 640 REMARK 465 GLY C 641 REMARK 465 LEU C 642 REMARK 465 LYS C 643 REMARK 465 PRO C 644 REMARK 465 MET C 645 REMARK 465 ARG C 646 REMARK 465 THR C 647 REMARK 465 LYS C 648 REMARK 465 VAL C 649 REMARK 465 GLU C 650 REMARK 465 ILE C 651 REMARK 465 ILE C 652 REMARK 465 GLN C 653 REMARK 465 SER C 654 REMARK 465 LEU C 655 REMARK 465 GLN C 656 REMARK 465 THR C 657 REMARK 465 ALA C 658 REMARK 465 SER C 659 REMARK 465 GLN C 660 REMARK 465 ILE C 661 REMARK 465 LEU C 662 REMARK 465 SER C 663 REMARK 465 THR C 664 REMARK 465 ALA C 665 REMARK 465 ASN C 666 REMARK 465 PRO C 667 REMARK 465 ASP C 668 REMARK 465 ASN C 669 REMARK 465 LYS C 670 REMARK 465 GLY C 671 REMARK 465 GLU C 672 REMARK 465 HIS C 673 REMARK 465 MET D 598 REMARK 465 GLY D 599 REMARK 465 SER D 600 REMARK 465 SER D 601 REMARK 465 HIS D 602 REMARK 465 HIS D 603 REMARK 465 HIS D 604 REMARK 465 HIS D 605 REMARK 465 HIS D 606 REMARK 465 HIS D 607 REMARK 465 SER D 608 REMARK 465 GLN D 609 REMARK 465 SER D 610 REMARK 465 ALA D 611 REMARK 465 ALA D 612 REMARK 465 SER D 613 REMARK 465 SER D 614 REMARK 465 ILE D 615 REMARK 465 ALA D 616 REMARK 465 SER D 617 REMARK 465 PRO D 618 REMARK 465 GLU D 619 REMARK 465 LYS D 620 REMARK 465 PHE D 621 REMARK 465 CYS D 622 REMARK 465 GLU D 623 REMARK 465 ILE D 624 REMARK 465 MET D 625 REMARK 465 MET D 626 REMARK 465 SER D 627 REMARK 465 GLN D 628 REMARK 465 SER D 629 REMARK 465 MET D 630 REMARK 465 LYS D 631 REMARK 465 GLU D 632 REMARK 465 LEU D 633 REMARK 465 ARG D 634 REMARK 465 GLN D 635 REMARK 465 SER D 636 REMARK 465 LEU D 637 REMARK 465 LYS D 638 REMARK 465 THR D 639 REMARK 465 VAL D 640 REMARK 465 GLY D 641 REMARK 465 LEU D 642 REMARK 465 LYS D 643 REMARK 465 PRO D 644 REMARK 465 MET D 645 REMARK 465 ARG D 646 REMARK 465 THR D 647 REMARK 465 LYS D 648 REMARK 465 VAL D 649 REMARK 465 GLU D 650 REMARK 465 ILE D 651 REMARK 465 ILE D 652 REMARK 465 GLN D 653 REMARK 465 SER D 654 REMARK 465 LEU D 655 REMARK 465 GLN D 656 REMARK 465 THR D 657 REMARK 465 ALA D 658 REMARK 465 SER D 659 REMARK 465 GLN D 660 REMARK 465 ILE D 661 REMARK 465 LEU D 662 REMARK 465 SER D 663 REMARK 465 THR D 664 REMARK 465 ALA D 665 REMARK 465 ASN D 666 REMARK 465 PRO D 667 REMARK 465 ASP D 668 REMARK 465 ASN D 669 REMARK 465 LYS D 670 REMARK 465 GLY D 671 REMARK 465 GLU D 672 REMARK 465 HIS D 673 REMARK 465 GLY D 674 REMARK 465 ASP D 746 REMARK 465 LYS D 747 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 22.76 -156.66 REMARK 500 PHE A 150 70.96 60.35 REMARK 500 CYS A 246 -68.63 -104.92 REMARK 500 GLN B 6 107.71 -57.08 REMARK 500 THR B 33 149.24 -170.42 REMARK 500 ASP B 154 75.00 -105.49 REMARK 500 GLU B 222 12.06 59.57 REMARK 500 CYS B 246 -86.66 -148.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 218 SG REMARK 620 2 CYS A 221 SG 108.1 REMARK 620 3 HIS A 251 ND1 109.0 96.5 REMARK 620 4 CYS A 254 SG 114.9 107.7 118.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 241 SG REMARK 620 2 CYS A 246 SG 105.8 REMARK 620 3 CYS A 279 SG 104.1 114.1 REMARK 620 4 CYS A 282 SG 112.4 110.8 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 218 SG REMARK 620 2 CYS B 221 SG 105.8 REMARK 620 3 HIS B 251 ND1 93.2 109.6 REMARK 620 4 CYS B 254 SG 112.5 107.2 126.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 241 SG REMARK 620 2 CYS B 246 SG 100.8 REMARK 620 3 CYS B 279 SG 111.7 112.9 REMARK 620 4 CYS B 282 SG 105.2 119.8 106.1 REMARK 620 N 1 2 3 DBREF 7CQ2 A 1 304 UNP A6ZLG6 SLX1_YEAS7 1 304 DBREF 7CQ2 B 1 304 UNP A6ZLG6 SLX1_YEAS7 1 304 DBREF1 7CQ2 C 610 747 UNP A0A6A5PU22_YEASX DBREF2 7CQ2 C A0A6A5PU22 610 747 DBREF1 7CQ2 D 610 747 UNP A0A6A5PU22_YEASX DBREF2 7CQ2 D A0A6A5PU22 610 747 SEQADV 7CQ2 MET C 598 UNP A0A6A5PU2 INITIATING METHIONINE SEQADV 7CQ2 GLY C 599 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 SER C 600 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 SER C 601 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS C 602 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS C 603 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS C 604 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS C 605 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS C 606 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS C 607 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 SER C 608 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 GLN C 609 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 MET D 598 UNP A0A6A5PU2 INITIATING METHIONINE SEQADV 7CQ2 GLY D 599 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 SER D 600 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 SER D 601 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS D 602 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS D 603 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS D 604 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS D 605 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS D 606 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 HIS D 607 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 SER D 608 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ2 GLN D 609 UNP A0A6A5PU2 EXPRESSION TAG SEQRES 1 A 304 MET SER GLN LYS ILE GLN GLN HIS GLN PHE PRO ASP PHE SEQRES 2 A 304 TYR CYS CYS TYR LEU LEU GLN SER ILE ASN LYS ARG GLN SEQRES 3 A 304 SER PHE TYR VAL GLY SER THR PRO ASN PRO VAL ARG ARG SEQRES 4 A 304 LEU ARG GLN HIS ASN GLY LYS LEU ALA VAL GLY GLY ALA SEQRES 5 A 304 TYR ARG THR LYS ARG ASP GLY SER ARG PRO TRP GLU MET SEQRES 6 A 304 ILE MET ILE VAL ARG GLY PHE PRO SER LYS ILE ALA ALA SEQRES 7 A 304 LEU GLN PHE GLU HIS ALA TRP GLN HIS GLY TYR GLN THR SEQRES 8 A 304 HIS TYR ILE ALA GLU LYS ASP ARG VAL VAL LYS HIS LYS SEQRES 9 A 304 ALA GLY GLY ARG THR LEU HIS HIS LYS VAL ALA LEU MET SEQRES 10 A 304 LYS LEU LEU LEU LYS HIS GLU PHE PHE GLN ARG MET ASN SEQRES 11 A 304 LEU ILE VAL GLU VAL PHE ASN ILE LYS ALA TRP GLU VAL SEQRES 12 A 304 TRP LYS GLN ASP LYS PHE PHE ILE GLU ARG ASP ARG PHE SEQRES 13 A 304 PRO ILE ASN ILE GLN ILE ASN GLU ASN ALA LEU GLU GLU SEQRES 14 A 304 PRO LYS GLU LYS THR VAL ASP VAL LEU MET ASP HIS SER SEQRES 15 A 304 ASP GLU ASN LEU LYS VAL VAL GLU ALA VAL TYR THR LYS SEQRES 16 A 304 VAL ILE GLU ASN GLU ARG ASN ILE PHE GLU THR PHE GLU SEQRES 17 A 304 LYS LYS LEU THR THR GLY VAL VAL ARG CYS GLU ILE CYS SEQRES 18 A 304 GLU LYS GLU ILE ASP TYR THR SER GLU GLU GLN ASN LEU SEQRES 19 A 304 LYS PRO PHE VAL ALA LEU CYS ASN ASN LYS ASP CYS GLY SEQRES 20 A 304 CYS VAL ASN HIS LEU LYS CYS LEU HIS ARG TYR PHE LEU SEQRES 21 A 304 ASP ASP GLU GLN LEU ILE VAL GLY ARG ARG ASN LEU ILE SEQRES 22 A 304 PRO ARG GLY GLY LYS CYS PRO LYS CYS ASP MET PHE CYS SEQRES 23 A 304 ASP TRP THR THR LEU VAL LYS PHE SER THR ARG MET LYS SEQRES 24 A 304 LEU ALA HIS GLY LYS SEQRES 1 B 304 MET SER GLN LYS ILE GLN GLN HIS GLN PHE PRO ASP PHE SEQRES 2 B 304 TYR CYS CYS TYR LEU LEU GLN SER ILE ASN LYS ARG GLN SEQRES 3 B 304 SER PHE TYR VAL GLY SER THR PRO ASN PRO VAL ARG ARG SEQRES 4 B 304 LEU ARG GLN HIS ASN GLY LYS LEU ALA VAL GLY GLY ALA SEQRES 5 B 304 TYR ARG THR LYS ARG ASP GLY SER ARG PRO TRP GLU MET SEQRES 6 B 304 ILE MET ILE VAL ARG GLY PHE PRO SER LYS ILE ALA ALA SEQRES 7 B 304 LEU GLN PHE GLU HIS ALA TRP GLN HIS GLY TYR GLN THR SEQRES 8 B 304 HIS TYR ILE ALA GLU LYS ASP ARG VAL VAL LYS HIS LYS SEQRES 9 B 304 ALA GLY GLY ARG THR LEU HIS HIS LYS VAL ALA LEU MET SEQRES 10 B 304 LYS LEU LEU LEU LYS HIS GLU PHE PHE GLN ARG MET ASN SEQRES 11 B 304 LEU ILE VAL GLU VAL PHE ASN ILE LYS ALA TRP GLU VAL SEQRES 12 B 304 TRP LYS GLN ASP LYS PHE PHE ILE GLU ARG ASP ARG PHE SEQRES 13 B 304 PRO ILE ASN ILE GLN ILE ASN GLU ASN ALA LEU GLU GLU SEQRES 14 B 304 PRO LYS GLU LYS THR VAL ASP VAL LEU MET ASP HIS SER SEQRES 15 B 304 ASP GLU ASN LEU LYS VAL VAL GLU ALA VAL TYR THR LYS SEQRES 16 B 304 VAL ILE GLU ASN GLU ARG ASN ILE PHE GLU THR PHE GLU SEQRES 17 B 304 LYS LYS LEU THR THR GLY VAL VAL ARG CYS GLU ILE CYS SEQRES 18 B 304 GLU LYS GLU ILE ASP TYR THR SER GLU GLU GLN ASN LEU SEQRES 19 B 304 LYS PRO PHE VAL ALA LEU CYS ASN ASN LYS ASP CYS GLY SEQRES 20 B 304 CYS VAL ASN HIS LEU LYS CYS LEU HIS ARG TYR PHE LEU SEQRES 21 B 304 ASP ASP GLU GLN LEU ILE VAL GLY ARG ARG ASN LEU ILE SEQRES 22 B 304 PRO ARG GLY GLY LYS CYS PRO LYS CYS ASP MET PHE CYS SEQRES 23 B 304 ASP TRP THR THR LEU VAL LYS PHE SER THR ARG MET LYS SEQRES 24 B 304 LEU ALA HIS GLY LYS SEQRES 1 C 150 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN SER SEQRES 2 C 150 ALA ALA SER SER ILE ALA SER PRO GLU LYS PHE CYS GLU SEQRES 3 C 150 ILE MET MET SER GLN SER MET LYS GLU LEU ARG GLN SER SEQRES 4 C 150 LEU LYS THR VAL GLY LEU LYS PRO MET ARG THR LYS VAL SEQRES 5 C 150 GLU ILE ILE GLN SER LEU GLN THR ALA SER GLN ILE LEU SEQRES 6 C 150 SER THR ALA ASN PRO ASP ASN LYS GLY GLU HIS GLY GLY SEQRES 7 C 150 VAL ALA ASN PHE SER LYS ILE GLU ILE PHE ASP HIS LEU SEQRES 8 C 150 THR GLU LEU ILE GLU ALA PHE PRO ASP PHE LEU GLU ARG SEQRES 9 C 150 ILE TYR THR PHE GLU PRO ILE PRO LEU ASN GLU LEU ILE SEQRES 10 C 150 GLU LYS LEU PHE SER ALA GLU PRO PHE VAL SER GLN ILE SEQRES 11 C 150 ASP GLU MET THR ILE ARG GLU TRP ALA ASP VAL GLN GLY SEQRES 12 C 150 ILE CYS LEU ARG ASN ASP LYS SEQRES 1 D 150 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN SER SEQRES 2 D 150 ALA ALA SER SER ILE ALA SER PRO GLU LYS PHE CYS GLU SEQRES 3 D 150 ILE MET MET SER GLN SER MET LYS GLU LEU ARG GLN SER SEQRES 4 D 150 LEU LYS THR VAL GLY LEU LYS PRO MET ARG THR LYS VAL SEQRES 5 D 150 GLU ILE ILE GLN SER LEU GLN THR ALA SER GLN ILE LEU SEQRES 6 D 150 SER THR ALA ASN PRO ASP ASN LYS GLY GLU HIS GLY GLY SEQRES 7 D 150 VAL ALA ASN PHE SER LYS ILE GLU ILE PHE ASP HIS LEU SEQRES 8 D 150 THR GLU LEU ILE GLU ALA PHE PRO ASP PHE LEU GLU ARG SEQRES 9 D 150 ILE TYR THR PHE GLU PRO ILE PRO LEU ASN GLU LEU ILE SEQRES 10 D 150 GLU LYS LEU PHE SER ALA GLU PRO PHE VAL SER GLN ILE SEQRES 11 D 150 ASP GLU MET THR ILE ARG GLU TRP ALA ASP VAL GLN GLY SEQRES 12 D 150 ILE CYS LEU ARG ASN ASP LYS HET ZN A 401 1 HET ZN A 402 1 HET GOL A 403 6 HET ZN B 401 1 HET ZN B 402 1 HET GOL B 403 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN 4(ZN 2+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 11 HOH *125(H2 O) HELIX 1 AA1 ASN A 35 ASN A 44 1 10 HELIX 2 AA2 SER A 74 GLY A 88 1 15 HELIX 3 AA3 TYR A 89 ILE A 94 5 6 HELIX 4 AA4 THR A 109 HIS A 123 1 15 HELIX 5 AA5 HIS A 123 ARG A 128 1 6 HELIX 6 AA6 ILE A 138 ASP A 147 1 10 HELIX 7 AA7 THR A 174 THR A 213 1 40 HELIX 8 AA8 GLU A 231 LYS A 235 5 5 HELIX 9 AA9 LEU A 252 GLY A 268 1 17 HELIX 10 AB1 TRP A 288 HIS A 302 1 15 HELIX 11 AB2 ASN B 35 ASN B 44 1 10 HELIX 12 AB3 SER B 74 HIS B 87 1 14 HELIX 13 AB4 THR B 109 HIS B 123 1 15 HELIX 14 AB5 HIS B 123 ARG B 128 1 6 HELIX 15 AB6 ILE B 138 ASP B 147 1 10 HELIX 16 AB7 THR B 174 THR B 212 1 39 HELIX 17 AB8 LEU B 252 GLN B 264 1 13 HELIX 18 AB9 TRP B 288 HIS B 302 1 15 HELIX 19 AC1 SER C 680 GLU C 693 1 14 HELIX 20 AC2 PHE C 695 THR C 704 1 10 HELIX 21 AC3 LEU C 710 GLU C 721 1 12 HELIX 22 AC4 PRO C 722 ILE C 727 5 6 HELIX 23 AC5 ASP C 728 GLY C 740 1 13 HELIX 24 AC6 SER D 680 GLU D 693 1 14 HELIX 25 AC7 PHE D 695 TYR D 703 1 9 HELIX 26 AC8 LEU D 710 GLU D 721 1 12 HELIX 27 AC9 PRO D 722 ILE D 727 5 6 HELIX 28 AD1 ASP D 728 GLY D 740 1 13 SHEET 1 AA1 5 PHE A 28 THR A 33 0 SHEET 2 AA1 5 CYS A 15 SER A 21 -1 N LEU A 19 O TYR A 29 SHEET 3 AA1 5 TRP A 63 ARG A 70 -1 O VAL A 69 N CYS A 16 SHEET 4 AA1 5 ILE A 132 ASN A 137 -1 O ILE A 132 N ARG A 70 SHEET 5 AA1 5 ILE A 160 LEU A 167 1 O GLN A 161 N VAL A 133 SHEET 1 AA2 2 VAL A 238 LEU A 240 0 SHEET 2 AA2 2 VAL A 249 HIS A 251 -1 O ASN A 250 N ALA A 239 SHEET 1 AA3 2 GLY A 276 LYS A 278 0 SHEET 2 AA3 2 PHE A 285 ASP A 287 -1 O CYS A 286 N GLY A 277 SHEET 1 AA4 5 PHE B 28 THR B 33 0 SHEET 2 AA4 5 CYS B 15 SER B 21 -1 N LEU B 19 O TYR B 29 SHEET 3 AA4 5 TRP B 63 ARG B 70 -1 O VAL B 69 N CYS B 16 SHEET 4 AA4 5 ILE B 132 ASN B 137 -1 O PHE B 136 N ILE B 66 SHEET 5 AA4 5 ASN B 159 LEU B 167 1 O GLN B 161 N VAL B 133 SHEET 1 AA5 2 VAL B 216 ARG B 217 0 SHEET 2 AA5 2 GLU B 224 ILE B 225 -1 O ILE B 225 N VAL B 216 SHEET 1 AA6 2 VAL B 238 LEU B 240 0 SHEET 2 AA6 2 VAL B 249 HIS B 251 -1 O ASN B 250 N ALA B 239 SHEET 1 AA7 2 GLY B 276 LYS B 278 0 SHEET 2 AA7 2 PHE B 285 ASP B 287 -1 O CYS B 286 N GLY B 277 SHEET 1 AA8 2 ILE C 708 PRO C 709 0 SHEET 2 AA8 2 LEU C 743 ARG C 744 1 O ARG C 744 N ILE C 708 SHEET 1 AA9 2 ILE D 708 PRO D 709 0 SHEET 2 AA9 2 LEU D 743 ARG D 744 1 O ARG D 744 N ILE D 708 LINK SG CYS A 218 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 241 ZN ZN A 402 1555 1555 2.26 LINK SG CYS A 246 ZN ZN A 402 1555 1555 2.32 LINK ND1 HIS A 251 ZN ZN A 401 1555 1555 2.11 LINK SG CYS A 254 ZN ZN A 401 1555 1555 2.27 LINK SG CYS A 279 ZN ZN A 402 1555 1555 2.36 LINK SG CYS A 282 ZN ZN A 402 1555 1555 2.30 LINK SG CYS B 218 ZN ZN B 401 1555 1555 2.33 LINK SG CYS B 221 ZN ZN B 401 1555 1555 2.31 LINK SG CYS B 241 ZN ZN B 402 1555 1555 2.30 LINK SG CYS B 246 ZN ZN B 402 1555 1555 2.34 LINK ND1 HIS B 251 ZN ZN B 401 1555 1555 2.13 LINK SG CYS B 254 ZN ZN B 401 1555 1555 2.29 LINK SG CYS B 279 ZN ZN B 402 1555 1555 2.30 LINK SG CYS B 282 ZN ZN B 402 1555 1555 2.29 CISPEP 1 ARG A 61 PRO A 62 0 -1.03 CISPEP 2 ARG B 61 PRO B 62 0 -2.57 CRYST1 61.284 75.960 186.966 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016317 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005349 0.00000