HEADER HYDROLASE 08-AUG-20 7CQ4 TITLE CRYSTAL STRUCTURE OF SLX1-SLX4 IN COMPLEX WITH 5'FLAP DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*GP*AP*TP*TP*AP*CP*AP*AP*CP*AP*GP*AP*T)-3'); COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*AP*GP*GP*AP*CP*AP*TP*CP*TP*TP*TP*GP*CP*C)-3'); COMPND 7 CHAIN: K; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (27-MER); COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1; COMPND 15 CHAIN: A; COMPND 16 EC: 3.1.-.-; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: SLX4 ISOFORM 1; COMPND 21 CHAIN: B; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN YJM789); SOURCE 15 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 16 ORGANISM_TAXID: 307796; SOURCE 17 STRAIN: YJM789; SOURCE 18 GENE: SLX1, SCY_0436; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PCDF-DUET; SOURCE 22 MOL_ID: 5; SOURCE 23 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 24 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 25 ORGANISM_TAXID: 4932; SOURCE 26 GENE: SLX4, GI526_G0003928; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 29 EXPRESSION_SYSTEM_PLASMID: PCDF-DUET KEYWDS ENDONUCLEASE COMPLEX, HOLLIDAY JUNCTION, SLX1-SLX4, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.XU,M.WANG,J.SUN,G.LI,N.YANG,R.M.XU REVDAT 3 29-NOV-23 7CQ4 1 REMARK REVDAT 2 29-DEC-21 7CQ4 1 JRNL REVDAT 1 16-JUN-21 7CQ4 0 JRNL AUTH X.XU,M.WANG,J.SUN,Z.YU,G.LI,N.YANG,R.M.XU JRNL TITL STRUCTURE SPECIFIC DNA RECOGNITION BY THE SLX1-SLX4 JRNL TITL 2 ENDONUCLEASE COMPLEX. JRNL REF NUCLEIC ACIDS RES. V. 49 7740 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34181713 JRNL DOI 10.1093/NAR/GKAB542 REMARK 2 REMARK 2 RESOLUTION. 3.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3100 - 5.9828 0.99 2796 139 0.1954 0.2110 REMARK 3 2 5.9828 - 4.7500 1.00 2643 135 0.2386 0.2498 REMARK 3 3 4.7500 - 4.1500 1.00 2620 120 0.2348 0.2789 REMARK 3 4 4.1500 - 3.7707 1.00 2545 151 0.2671 0.3199 REMARK 3 5 3.7707 - 3.5005 1.00 2544 151 0.2889 0.3125 REMARK 3 6 3.5005 - 3.2942 0.99 2499 153 0.3108 0.3557 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 96.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4684 REMARK 3 ANGLE : 0.993 6533 REMARK 3 CHIRALITY : 0.043 718 REMARK 3 PLANARITY : 0.004 646 REMARK 3 DIHEDRAL : 20.350 1846 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CQ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16540 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.294 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.72200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7CQ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, PH 6.0, 12% REMARK 280 PEG 1500 AND 0.1 M TCEP HYDROCHLORIDE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 155.71733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.85867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 116.78800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.92933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 194.64667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 155.71733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 77.85867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.92933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 116.78800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 194.64667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, K, L, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 LYS A 4 REMARK 465 ILE A 5 REMARK 465 VAL A 49 REMARK 465 GLY A 50 REMARK 465 GLY A 51 REMARK 465 ALA A 52 REMARK 465 TYR A 53 REMARK 465 ARG A 54 REMARK 465 THR A 55 REMARK 465 LYS A 304 REMARK 465 MET B 598 REMARK 465 GLY B 599 REMARK 465 SER B 600 REMARK 465 SER B 601 REMARK 465 HIS B 602 REMARK 465 HIS B 603 REMARK 465 HIS B 604 REMARK 465 HIS B 605 REMARK 465 HIS B 606 REMARK 465 HIS B 607 REMARK 465 SER B 608 REMARK 465 GLN B 609 REMARK 465 SER B 610 REMARK 465 ALA B 611 REMARK 465 ALA B 612 REMARK 465 SER B 613 REMARK 465 SER B 614 REMARK 465 ILE B 615 REMARK 465 ALA B 616 REMARK 465 SER B 617 REMARK 465 PRO B 618 REMARK 465 GLU B 619 REMARK 465 LYS B 620 REMARK 465 PHE B 621 REMARK 465 PRO B 667 REMARK 465 ASP B 668 REMARK 465 ASN B 669 REMARK 465 LYS B 670 REMARK 465 GLY B 671 REMARK 465 GLU B 672 REMARK 465 HIS B 673 REMARK 465 GLY B 674 REMARK 465 GLY B 675 REMARK 465 VAL B 676 REMARK 465 ALA B 677 REMARK 465 LYS B 748 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG H 1 O4' - C4' - C3' ANGL. DEV. = -4.0 DEGREES REMARK 500 DC H 7 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC H 7 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC H 10 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC H 10 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA H 11 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG H 12 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG K 1 C3' - C2' - C1' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG K 2 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DT K 6 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC K 7 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC L 4 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT L 10 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT L 12 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT L 12 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG L 19 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT L 21 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT L 23 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC L 27 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 90 21.85 -153.37 REMARK 500 GLU A 230 -61.96 -96.20 REMARK 500 LEU A 234 44.09 -78.16 REMARK 500 CYS A 246 -67.02 -106.76 REMARK 500 ASN A 271 -167.57 -79.87 REMARK 500 HIS A 302 60.09 -104.46 REMARK 500 ARG B 744 -163.46 -117.16 REMARK 500 ASN B 745 -91.51 -106.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 218 SG REMARK 620 2 CYS A 221 SG 98.6 REMARK 620 3 HIS A 251 ND1 95.1 113.8 REMARK 620 4 CYS A 254 SG 96.2 101.6 140.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 241 SG REMARK 620 2 CYS A 246 SG 102.9 REMARK 620 3 CYS A 279 SG 117.3 128.6 REMARK 620 4 CYS A 282 SG 83.1 112.2 103.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7CQ2 RELATED DB: PDB REMARK 900 RELATED ID: 7CQ3 RELATED DB: PDB DBREF 7CQ4 H 1 14 PDB 7CQ4 7CQ4 1 14 DBREF 7CQ4 K 0 13 PDB 7CQ4 7CQ4 0 13 DBREF 7CQ4 L 1 27 PDB 7CQ4 7CQ4 1 27 DBREF 7CQ4 A 1 304 UNP A6ZLG6 SLX1_YEAS7 1 304 DBREF1 7CQ4 B 610 748 UNP A0A6A5PU22_YEASX DBREF2 7CQ4 B A0A6A5PU22 610 748 SEQADV 7CQ4 PHE A 17 UNP A6ZLG6 TYR 17 ENGINEERED MUTATION SEQADV 7CQ4 MET B 598 UNP A0A6A5PU2 INITIATING METHIONINE SEQADV 7CQ4 GLY B 599 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ4 SER B 600 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ4 SER B 601 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ4 HIS B 602 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ4 HIS B 603 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ4 HIS B 604 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ4 HIS B 605 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ4 HIS B 606 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ4 HIS B 607 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ4 SER B 608 UNP A0A6A5PU2 EXPRESSION TAG SEQADV 7CQ4 GLN B 609 UNP A0A6A5PU2 EXPRESSION TAG SEQRES 1 H 14 DG DG DA DT DT DA DC DA DA DC DA DG DA SEQRES 2 H 14 DT SEQRES 1 K 14 DA DG DG DA DC DA DT DC DT DT DT DG DC SEQRES 2 K 14 DC SEQRES 1 L 27 DC DG DG DC DA DA DA DG DA DT DG DT DC SEQRES 2 L 27 DC DA DT DC DT DG DT DT DG DT DA DA DT SEQRES 3 L 27 DC SEQRES 1 A 304 MET SER GLN LYS ILE GLN GLN HIS GLN PHE PRO ASP PHE SEQRES 2 A 304 TYR CYS CYS PHE LEU LEU GLN SER ILE ASN LYS ARG GLN SEQRES 3 A 304 SER PHE TYR VAL GLY SER THR PRO ASN PRO VAL ARG ARG SEQRES 4 A 304 LEU ARG GLN HIS ASN GLY LYS LEU ALA VAL GLY GLY ALA SEQRES 5 A 304 TYR ARG THR LYS ARG ASP GLY SER ARG PRO TRP GLU MET SEQRES 6 A 304 ILE MET ILE VAL ARG GLY PHE PRO SER LYS ILE ALA ALA SEQRES 7 A 304 LEU GLN PHE GLU HIS ALA TRP GLN HIS GLY TYR GLN THR SEQRES 8 A 304 HIS TYR ILE ALA GLU LYS ASP ARG VAL VAL LYS HIS LYS SEQRES 9 A 304 ALA GLY GLY ARG THR LEU HIS HIS LYS VAL ALA LEU MET SEQRES 10 A 304 LYS LEU LEU LEU LYS HIS GLU PHE PHE GLN ARG MET ASN SEQRES 11 A 304 LEU ILE VAL GLU VAL PHE ASN ILE LYS ALA TRP GLU VAL SEQRES 12 A 304 TRP LYS GLN ASP LYS PHE PHE ILE GLU ARG ASP ARG PHE SEQRES 13 A 304 PRO ILE ASN ILE GLN ILE ASN GLU ASN ALA LEU GLU GLU SEQRES 14 A 304 PRO LYS GLU LYS THR VAL ASP VAL LEU MET ASP HIS SER SEQRES 15 A 304 ASP GLU ASN LEU LYS VAL VAL GLU ALA VAL TYR THR LYS SEQRES 16 A 304 VAL ILE GLU ASN GLU ARG ASN ILE PHE GLU THR PHE GLU SEQRES 17 A 304 LYS LYS LEU THR THR GLY VAL VAL ARG CYS GLU ILE CYS SEQRES 18 A 304 GLU LYS GLU ILE ASP TYR THR SER GLU GLU GLN ASN LEU SEQRES 19 A 304 LYS PRO PHE VAL ALA LEU CYS ASN ASN LYS ASP CYS GLY SEQRES 20 A 304 CYS VAL ASN HIS LEU LYS CYS LEU HIS ARG TYR PHE LEU SEQRES 21 A 304 ASP ASP GLU GLN LEU ILE VAL GLY ARG ARG ASN LEU ILE SEQRES 22 A 304 PRO ARG GLY GLY LYS CYS PRO LYS CYS ASP MET PHE CYS SEQRES 23 A 304 ASP TRP THR THR LEU VAL LYS PHE SER THR ARG MET LYS SEQRES 24 A 304 LEU ALA HIS GLY LYS SEQRES 1 B 151 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN SER SEQRES 2 B 151 ALA ALA SER SER ILE ALA SER PRO GLU LYS PHE CYS GLU SEQRES 3 B 151 ILE MET MET SER GLN SER MET LYS GLU LEU ARG GLN SER SEQRES 4 B 151 LEU LYS THR VAL GLY LEU LYS PRO MET ARG THR LYS VAL SEQRES 5 B 151 GLU ILE ILE GLN SER LEU GLN THR ALA SER GLN ILE LEU SEQRES 6 B 151 SER THR ALA ASN PRO ASP ASN LYS GLY GLU HIS GLY GLY SEQRES 7 B 151 VAL ALA ASN PHE SER LYS ILE GLU ILE PHE ASP HIS LEU SEQRES 8 B 151 THR GLU LEU ILE GLU ALA PHE PRO ASP PHE LEU GLU ARG SEQRES 9 B 151 ILE TYR THR PHE GLU PRO ILE PRO LEU ASN GLU LEU ILE SEQRES 10 B 151 GLU LYS LEU PHE SER ALA GLU PRO PHE VAL SER GLN ILE SEQRES 11 B 151 ASP GLU MET THR ILE ARG GLU TRP ALA ASP VAL GLN GLY SEQRES 12 B 151 ILE CYS LEU ARG ASN ASP LYS LYS HET ZN A 401 1 HET ZN A 402 1 HETNAM ZN ZINC ION FORMUL 6 ZN 2(ZN 2+) FORMUL 8 HOH *12(H2 O) HELIX 1 AA1 ASN A 35 ASN A 44 1 10 HELIX 2 AA2 SER A 74 HIS A 87 1 14 HELIX 3 AA3 ALA A 95 ARG A 99 5 5 HELIX 4 AA4 THR A 109 HIS A 123 1 15 HELIX 5 AA5 HIS A 123 ARG A 128 1 6 HELIX 6 AA6 ILE A 138 ASP A 147 1 10 HELIX 7 AA7 THR A 174 THR A 212 1 39 HELIX 8 AA8 LEU A 252 GLY A 268 1 17 HELIX 9 AA9 TRP A 288 HIS A 302 1 15 HELIX 10 AB1 SER B 629 GLY B 641 1 13 HELIX 11 AB2 THR B 647 ALA B 665 1 19 HELIX 12 AB3 SER B 680 GLU B 693 1 14 HELIX 13 AB4 PHE B 695 THR B 704 1 10 HELIX 14 AB5 LEU B 710 GLU B 721 1 12 HELIX 15 AB6 PRO B 722 ILE B 727 5 6 HELIX 16 AB7 ASP B 728 GLY B 740 1 13 SHEET 1 AA1 5 PHE A 28 THR A 33 0 SHEET 2 AA1 5 CYS A 15 SER A 21 -1 N LEU A 19 O TYR A 29 SHEET 3 AA1 5 TRP A 63 ARG A 70 -1 O GLU A 64 N GLN A 20 SHEET 4 AA1 5 ILE A 132 ASN A 137 -1 O ILE A 132 N ARG A 70 SHEET 5 AA1 5 ASN A 159 LEU A 167 1 O GLN A 161 N VAL A 133 SHEET 1 AA2 2 VAL A 216 ARG A 217 0 SHEET 2 AA2 2 GLU A 224 ILE A 225 -1 O ILE A 225 N VAL A 216 SHEET 1 AA3 2 VAL A 238 LEU A 240 0 SHEET 2 AA3 2 VAL A 249 HIS A 251 -1 O ASN A 250 N ALA A 239 SHEET 1 AA4 2 GLY A 276 LYS A 278 0 SHEET 2 AA4 2 PHE A 285 ASP A 287 -1 O CYS A 286 N GLY A 277 SHEET 1 AA5 2 ILE B 708 PRO B 709 0 SHEET 2 AA5 2 LEU B 743 ARG B 744 1 O ARG B 744 N ILE B 708 LINK SG CYS A 218 ZN ZN A 401 1555 1555 2.37 LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 241 ZN ZN A 402 1555 1555 2.36 LINK SG CYS A 246 ZN ZN A 402 1555 1555 2.34 LINK ND1 HIS A 251 ZN ZN A 401 1555 1555 2.18 LINK SG CYS A 254 ZN ZN A 401 1555 1555 2.37 LINK SG CYS A 279 ZN ZN A 402 1555 1555 2.34 LINK SG CYS A 282 ZN ZN A 402 1555 1555 2.32 CISPEP 1 ARG A 61 PRO A 62 0 2.49 CRYST1 123.223 123.223 233.576 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008115 0.004685 0.000000 0.00000 SCALE2 0.000000 0.009371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004281 0.00000