HEADER TRANSCRIPTION 09-AUG-20 7CQ8 OBSLTE 20-OCT-21 7CQ8 7VJO TITLE PECTOBACTERIUM PHAGE ZF40 APO-ACA2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN ACA2; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM PHAGE ZF40; SOURCE 3 ORGANISM_TAXID: 1127516; SOURCE 4 GENE: ZF40_0030; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTI-CRISPR, ACA2, ANTI-CRISPR-ASSOCIATED PROTEIN, CRISPR, KEYWDS 2 REPRESSION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.LIU,L.S.ZHANG,B.X.WU,H.D.HUANG REVDAT 2 20-OCT-21 7CQ8 1 OBSLTE REVDAT 1 11-AUG-21 7CQ8 0 JRNL AUTH Y.H.LIU,L.S.ZHANG,B.X.WU,H.D.HUANG JRNL TITL PECTOBACTERIUM PHAGE ZF40 APO-ACA2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16-3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 60188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.2483 - 1.2291 0.62 0 0 0.2737 0.3213 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1964 REMARK 3 ANGLE : 0.859 2662 REMARK 3 CHIRALITY : 0.075 286 REMARK 3 PLANARITY : 0.005 351 REMARK 3 DIHEDRAL : 16.221 1202 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63673 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.17100 REMARK 200 R SYM (I) : 0.15700 REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS PH8.5, 20% PEG REMARK 280 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.10050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.28300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.10050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.28300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 366 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 272 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 294 O HOH A 303 1.96 REMARK 500 O HOH B 320 O HOH B 324 1.97 REMARK 500 O HOH B 236 O HOH B 242 2.00 REMARK 500 O HOH B 248 O HOH B 320 2.01 REMARK 500 O HOH A 324 O HOH A 338 2.01 REMARK 500 O HOH A 204 O HOH A 323 2.07 REMARK 500 O HOH B 201 O HOH B 353 2.07 REMARK 500 O HOH B 201 O HOH B 319 2.09 REMARK 500 O HOH B 213 O HOH A 321 2.09 REMARK 500 O HOH B 311 O HOH A 321 2.09 REMARK 500 O HOH B 201 O HOH B 216 2.11 REMARK 500 O HOH B 201 O HOH B 221 2.12 REMARK 500 O HOH B 201 O HOH B 217 2.13 REMARK 500 O HOH A 303 O HOH A 324 2.13 REMARK 500 O HOH A 220 O HOH A 323 2.14 REMARK 500 O HOH A 257 O HOH A 321 2.14 REMARK 500 O HOH A 201 O HOH A 320 2.14 REMARK 500 O HOH B 233 O HOH A 321 2.17 REMARK 500 O HOH A 308 O HOH A 320 2.18 REMARK 500 O HOH A 205 O HOH A 320 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 314 O HOH A 321 4546 2.10 REMARK 500 O HOH B 206 O HOH B 326 4445 2.11 REMARK 500 O HOH A 323 O HOH A 330 2556 2.15 REMARK 500 O HOH B 307 O HOH A 311 1545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 367 DISTANCE = 6.19 ANGSTROMS DBREF 7CQ8 B 1 116 UNP H9C180 H9C180_9CAUD 1 116 DBREF 7CQ8 A 1 116 UNP H9C180 H9C180_9CAUD 1 116 SEQADV 7CQ8 GLY B -1 UNP H9C180 EXPRESSION TAG SEQADV 7CQ8 SER B 0 UNP H9C180 EXPRESSION TAG SEQADV 7CQ8 GLY A -1 UNP H9C180 EXPRESSION TAG SEQADV 7CQ8 SER A 0 UNP H9C180 EXPRESSION TAG SEQRES 1 B 118 GLY SER MET THR ASN LYS GLU LEU GLN ALA ILE ARG LYS SEQRES 2 B 118 LEU LEU MET LEU ASP VAL SER GLU ALA ALA GLU HIS ILE SEQRES 3 B 118 GLY ARG VAL SER ALA ARG SER TRP GLN TYR TRP GLU SER SEQRES 4 B 118 GLY ARG SER ALA VAL PRO ASP ASP VAL GLU GLN GLU MET SEQRES 5 B 118 LEU ASP LEU ALA SER VAL ARG ILE GLU MET MET SER ALA SEQRES 6 B 118 ILE ASP LYS ARG LEU ALA ASP GLY GLU ARG PRO LYS LEU SEQRES 7 B 118 ARG PHE TYR ASN LYS LEU ASP GLU TYR LEU ALA ASP ASN SEQRES 8 B 118 PRO ASP HIS ASN VAL ILE GLY TRP ARG LEU SER GLN SER SEQRES 9 B 118 VAL ALA ALA LEU TYR TYR THR GLU GLY HIS ALA ASP LEU SEQRES 10 B 118 ILE SEQRES 1 A 118 GLY SER MET THR ASN LYS GLU LEU GLN ALA ILE ARG LYS SEQRES 2 A 118 LEU LEU MET LEU ASP VAL SER GLU ALA ALA GLU HIS ILE SEQRES 3 A 118 GLY ARG VAL SER ALA ARG SER TRP GLN TYR TRP GLU SER SEQRES 4 A 118 GLY ARG SER ALA VAL PRO ASP ASP VAL GLU GLN GLU MET SEQRES 5 A 118 LEU ASP LEU ALA SER VAL ARG ILE GLU MET MET SER ALA SEQRES 6 A 118 ILE ASP LYS ARG LEU ALA ASP GLY GLU ARG PRO LYS LEU SEQRES 7 A 118 ARG PHE TYR ASN LYS LEU ASP GLU TYR LEU ALA ASP ASN SEQRES 8 A 118 PRO ASP HIS ASN VAL ILE GLY TRP ARG LEU SER GLN SER SEQRES 9 A 118 VAL ALA ALA LEU TYR TYR THR GLU GLY HIS ALA ASP LEU SEQRES 10 A 118 ILE FORMUL 3 HOH *313(H2 O) HELIX 1 AA1 THR B 2 LEU B 13 1 12 HELIX 2 AA2 ASP B 16 ILE B 24 1 9 HELIX 3 AA3 SER B 28 GLY B 38 1 11 HELIX 4 AA4 PRO B 43 ASP B 70 1 28 HELIX 5 AA5 LYS B 81 ASN B 89 1 9 HELIX 6 AA6 ASN B 93 GLU B 110 1 18 HELIX 7 AA7 THR A 2 LEU A 13 1 12 HELIX 8 AA8 ASP A 16 ILE A 24 1 9 HELIX 9 AA9 SER A 28 GLY A 38 1 11 HELIX 10 AB1 PRO A 43 ASP A 70 1 28 HELIX 11 AB2 LYS A 81 ASN A 89 1 9 HELIX 12 AB3 ASN A 93 GLU A 110 1 18 SHEET 1 AA1 2 LYS B 75 ARG B 77 0 SHEET 2 AA1 2 ASP B 114 ILE B 116 1 O ASP B 114 N LEU B 76 SHEET 1 AA2 2 LYS A 75 ARG A 77 0 SHEET 2 AA2 2 ASP A 114 ILE A 116 1 O ASP A 114 N LEU A 76 CRYST1 96.201 34.566 81.299 90.00 124.58 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010395 0.000000 0.007166 0.00000 SCALE2 0.000000 0.028930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014940 0.00000