data_7CQO # _entry.id 7CQO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.360 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7CQO pdb_00007cqo 10.2210/pdb7cqo/pdb WWPDB D_1300016624 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7CQO _pdbx_database_status.recvd_initial_deposition_date 2020-08-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Luo, Z.P.' 1 ? 'Li, D.F.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Crystals _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2073-4352 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Selenourea for experimental phasing of membrane protein crystals grown in lipid cubic phase' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/cryst12070976 _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Luo, Z.P.' 1 ? primary 'Gu, W.' 2 ? primary 'Wang, Y.' 3 ? primary 'Tang, Y.' 4 ? primary 'Li, D.F.' 5 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7CQO _cell.details ? _cell.formula_units_Z ? _cell.length_a 78.733 _cell.length_a_esd ? _cell.length_b 78.733 _cell.length_b_esd ? _cell.length_c 37.241 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Lysozyme C' 14331.160 1 3.2.1.17 ? ? ? 2 non-polymer syn selenourea 123.016 6 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 5 ? ? ? ? 5 water nat water 18.015 116 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '1,4-beta-N-acetylmuramidase C,Allergen Gal d IV' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_seq_one_letter_code_can ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 PHE n 1 4 GLY n 1 5 ARG n 1 6 CYS n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 MET n 1 13 LYS n 1 14 ARG n 1 15 HIS n 1 16 GLY n 1 17 LEU n 1 18 ASP n 1 19 ASN n 1 20 TYR n 1 21 ARG n 1 22 GLY n 1 23 TYR n 1 24 SER n 1 25 LEU n 1 26 GLY n 1 27 ASN n 1 28 TRP n 1 29 VAL n 1 30 CYS n 1 31 ALA n 1 32 ALA n 1 33 LYS n 1 34 PHE n 1 35 GLU n 1 36 SER n 1 37 ASN n 1 38 PHE n 1 39 ASN n 1 40 THR n 1 41 GLN n 1 42 ALA n 1 43 THR n 1 44 ASN n 1 45 ARG n 1 46 ASN n 1 47 THR n 1 48 ASP n 1 49 GLY n 1 50 SER n 1 51 THR n 1 52 ASP n 1 53 TYR n 1 54 GLY n 1 55 ILE n 1 56 LEU n 1 57 GLN n 1 58 ILE n 1 59 ASN n 1 60 SER n 1 61 ARG n 1 62 TRP n 1 63 TRP n 1 64 CYS n 1 65 ASN n 1 66 ASP n 1 67 GLY n 1 68 ARG n 1 69 THR n 1 70 PRO n 1 71 GLY n 1 72 SER n 1 73 ARG n 1 74 ASN n 1 75 LEU n 1 76 CYS n 1 77 ASN n 1 78 ILE n 1 79 PRO n 1 80 CYS n 1 81 SER n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 SER n 1 86 SER n 1 87 ASP n 1 88 ILE n 1 89 THR n 1 90 ALA n 1 91 SER n 1 92 VAL n 1 93 ASN n 1 94 CYS n 1 95 ALA n 1 96 LYS n 1 97 LYS n 1 98 ILE n 1 99 VAL n 1 100 SER n 1 101 ASP n 1 102 GLY n 1 103 ASN n 1 104 GLY n 1 105 MET n 1 106 ASN n 1 107 ALA n 1 108 TRP n 1 109 VAL n 1 110 ALA n 1 111 TRP n 1 112 ARG n 1 113 ASN n 1 114 ARG n 1 115 CYS n 1 116 LYS n 1 117 GLY n 1 118 THR n 1 119 ASP n 1 120 VAL n 1 121 GLN n 1 122 ALA n 1 123 TRP n 1 124 ILE n 1 125 ARG n 1 126 GLY n 1 127 CYS n 1 128 ARG n 1 129 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 129 _entity_src_nat.common_name Chicken _entity_src_nat.pdbx_organism_scientific 'Gallus gallus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9031 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYSC_CHICK _struct_ref.pdbx_db_accession P00698 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _struct_ref.pdbx_align_begin 19 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7CQO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00698 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 19 _struct_ref_seq.pdbx_auth_seq_align_end 147 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SEY non-polymer . selenourea ? 'C H4 N2 Se' 123.016 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7CQO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '35% (v/v) PEG 400, 0.8 M NaCl, 100 mM sodium citrate/citric acid pH 4.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-10-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7CQO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.71 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13134 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 25.5 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 51.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.014 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.71 _reflns_shell.d_res_low 1.77 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 8.08 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1278 _reflns_shell.percent_possible_all 97.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.487 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 22.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.097 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.974 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.B_iso_max 60.650 _refine.B_iso_mean 22.8270 _refine.B_iso_min 10.850 _refine.correlation_coeff_Fo_to_Fc 0.9590 _refine.correlation_coeff_Fo_to_Fc_free 0.9450 _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7CQO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.7100 _refine.ls_d_res_low 33.6600 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12454 _refine.ls_number_reflns_R_free 637 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.4600 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1704 _refine.ls_R_factor_R_free 0.1988 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1689 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1130 _refine.pdbx_overall_ESU_R_Free 0.1050 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.8330 _refine.overall_SU_ML 0.0610 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.7100 _refine_hist.d_res_low 33.6600 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 1148 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 129 _refine_hist.pdbx_B_iso_mean_ligand 34.53 _refine_hist.pdbx_B_iso_mean_solvent 31.78 _refine_hist.pdbx_number_atoms_protein 1001 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.012 1052 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 1.616 1.643 1421 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 6.059 5.000 130 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 32.923 20.806 62 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 11.760 15.000 167 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 19.838 15.000 11 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.104 0.200 131 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 845 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 2.671 3.761 520 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 3.379 7.008 650 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 5.497 4.656 532 ? r_scbond_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.7100 _refine_ls_shell.d_res_low 1.7540 _refine_ls_shell.number_reflns_all 930 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_R_work 885 _refine_ls_shell.percent_reflns_obs 99.0400 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2010 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1690 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7CQO _struct.title 'Lysozyme grown in LCP soaked with selenourea for 6 min' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7CQO _struct_keywords.text 'selenourea, Se-SAD, LCP, lysozyme, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 4 ? HIS A 15 ? GLY A 22 HIS A 33 1 ? 12 HELX_P HELX_P2 AA2 ASN A 19 ? TYR A 23 ? ASN A 37 TYR A 41 5 ? 5 HELX_P HELX_P3 AA3 SER A 24 ? ASN A 37 ? SER A 42 ASN A 55 1 ? 14 HELX_P HELX_P4 AA4 PRO A 79 ? SER A 85 ? PRO A 97 SER A 103 5 ? 7 HELX_P HELX_P5 AA5 ILE A 88 ? SER A 100 ? ILE A 106 SER A 118 1 ? 13 HELX_P HELX_P6 AA6 ASN A 103 ? ALA A 107 ? ASN A 121 ALA A 125 5 ? 5 HELX_P HELX_P7 AA7 TRP A 108 ? CYS A 115 ? TRP A 126 CYS A 133 1 ? 8 HELX_P HELX_P8 AA8 ASP A 119 ? ARG A 125 ? ASP A 137 ARG A 143 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 24 A CYS 145 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 48 A CYS 133 1_555 ? ? ? ? ? ? ? 2.144 ? ? disulf3 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 82 A CYS 98 1_555 ? ? ? ? ? ? ? 2.073 ? ? disulf4 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 94 A CYS 112 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc1 metalc ? ? A SER 60 O ? ? ? 1_555 H NA . NA ? ? A SER 78 A NA 207 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc2 metalc ? ? A CYS 64 O ? ? ? 1_555 H NA . NA ? ? A CYS 82 A NA 207 1_555 ? ? ? ? ? ? ? 2.463 ? ? metalc3 metalc ? ? A SER 72 OG ? ? ? 1_555 H NA . NA ? ? A SER 90 A NA 207 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc4 metalc ? ? A ARG 73 O ? ? ? 1_555 H NA . NA ? ? A ARG 91 A NA 207 1_555 ? ? ? ? ? ? ? 2.570 ? ? metalc5 metalc ? ? H NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 207 A HOH 373 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc6 metalc ? ? H NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 207 A HOH 383 1_555 ? ? ? ? ? ? ? 2.486 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 43 ? ARG A 45 ? THR A 61 ARG A 63 AA1 2 THR A 51 ? TYR A 53 ? THR A 69 TYR A 71 AA1 3 ILE A 58 ? ASN A 59 ? ILE A 76 ASN A 77 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 44 ? N ASN A 62 O ASP A 52 ? O ASP A 70 AA1 2 3 N TYR A 53 ? N TYR A 71 O ILE A 58 ? O ILE A 76 # _atom_sites.entry_id 7CQO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.012701 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012701 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026852 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL N NA O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 19 19 LYS LYS A . n A 1 2 VAL 2 20 20 VAL VAL A . n A 1 3 PHE 3 21 21 PHE PHE A . n A 1 4 GLY 4 22 22 GLY GLY A . n A 1 5 ARG 5 23 23 ARG ARG A . n A 1 6 CYS 6 24 24 CYS CYS A . n A 1 7 GLU 7 25 25 GLU GLU A . n A 1 8 LEU 8 26 26 LEU LEU A . n A 1 9 ALA 9 27 27 ALA ALA A . n A 1 10 ALA 10 28 28 ALA ALA A . n A 1 11 ALA 11 29 29 ALA ALA A . n A 1 12 MET 12 30 30 MET MET A . n A 1 13 LYS 13 31 31 LYS LYS A . n A 1 14 ARG 14 32 32 ARG ARG A . n A 1 15 HIS 15 33 33 HIS HIS A . n A 1 16 GLY 16 34 34 GLY GLY A . n A 1 17 LEU 17 35 35 LEU LEU A . n A 1 18 ASP 18 36 36 ASP ASP A . n A 1 19 ASN 19 37 37 ASN ASN A . n A 1 20 TYR 20 38 38 TYR TYR A . n A 1 21 ARG 21 39 39 ARG ARG A . n A 1 22 GLY 22 40 40 GLY GLY A . n A 1 23 TYR 23 41 41 TYR TYR A . n A 1 24 SER 24 42 42 SER SER A . n A 1 25 LEU 25 43 43 LEU LEU A . n A 1 26 GLY 26 44 44 GLY GLY A . n A 1 27 ASN 27 45 45 ASN ASN A . n A 1 28 TRP 28 46 46 TRP TRP A . n A 1 29 VAL 29 47 47 VAL VAL A . n A 1 30 CYS 30 48 48 CYS CYS A . n A 1 31 ALA 31 49 49 ALA ALA A . n A 1 32 ALA 32 50 50 ALA ALA A . n A 1 33 LYS 33 51 51 LYS LYS A . n A 1 34 PHE 34 52 52 PHE PHE A . n A 1 35 GLU 35 53 53 GLU GLU A . n A 1 36 SER 36 54 54 SER SER A . n A 1 37 ASN 37 55 55 ASN ASN A . n A 1 38 PHE 38 56 56 PHE PHE A . n A 1 39 ASN 39 57 57 ASN ASN A . n A 1 40 THR 40 58 58 THR THR A . n A 1 41 GLN 41 59 59 GLN GLN A . n A 1 42 ALA 42 60 60 ALA ALA A . n A 1 43 THR 43 61 61 THR THR A . n A 1 44 ASN 44 62 62 ASN ASN A . n A 1 45 ARG 45 63 63 ARG ARG A . n A 1 46 ASN 46 64 64 ASN ASN A . n A 1 47 THR 47 65 65 THR THR A . n A 1 48 ASP 48 66 66 ASP ASP A . n A 1 49 GLY 49 67 67 GLY GLY A . n A 1 50 SER 50 68 68 SER SER A . n A 1 51 THR 51 69 69 THR THR A . n A 1 52 ASP 52 70 70 ASP ASP A . n A 1 53 TYR 53 71 71 TYR TYR A . n A 1 54 GLY 54 72 72 GLY GLY A . n A 1 55 ILE 55 73 73 ILE ILE A . n A 1 56 LEU 56 74 74 LEU LEU A . n A 1 57 GLN 57 75 75 GLN GLN A . n A 1 58 ILE 58 76 76 ILE ILE A . n A 1 59 ASN 59 77 77 ASN ASN A . n A 1 60 SER 60 78 78 SER SER A . n A 1 61 ARG 61 79 79 ARG ARG A . n A 1 62 TRP 62 80 80 TRP TRP A . n A 1 63 TRP 63 81 81 TRP TRP A . n A 1 64 CYS 64 82 82 CYS CYS A . n A 1 65 ASN 65 83 83 ASN ASN A . n A 1 66 ASP 66 84 84 ASP ASP A . n A 1 67 GLY 67 85 85 GLY GLY A . n A 1 68 ARG 68 86 86 ARG ARG A . n A 1 69 THR 69 87 87 THR THR A . n A 1 70 PRO 70 88 88 PRO PRO A . n A 1 71 GLY 71 89 89 GLY GLY A . n A 1 72 SER 72 90 90 SER SER A . n A 1 73 ARG 73 91 91 ARG ARG A . n A 1 74 ASN 74 92 92 ASN ASN A . n A 1 75 LEU 75 93 93 LEU LEU A . n A 1 76 CYS 76 94 94 CYS CYS A . n A 1 77 ASN 77 95 95 ASN ASN A . n A 1 78 ILE 78 96 96 ILE ILE A . n A 1 79 PRO 79 97 97 PRO PRO A . n A 1 80 CYS 80 98 98 CYS CYS A . n A 1 81 SER 81 99 99 SER SER A . n A 1 82 ALA 82 100 100 ALA ALA A . n A 1 83 LEU 83 101 101 LEU LEU A . n A 1 84 LEU 84 102 102 LEU LEU A . n A 1 85 SER 85 103 103 SER SER A . n A 1 86 SER 86 104 104 SER SER A . n A 1 87 ASP 87 105 105 ASP ASP A . n A 1 88 ILE 88 106 106 ILE ILE A . n A 1 89 THR 89 107 107 THR THR A . n A 1 90 ALA 90 108 108 ALA ALA A . n A 1 91 SER 91 109 109 SER SER A . n A 1 92 VAL 92 110 110 VAL VAL A . n A 1 93 ASN 93 111 111 ASN ASN A . n A 1 94 CYS 94 112 112 CYS CYS A . n A 1 95 ALA 95 113 113 ALA ALA A . n A 1 96 LYS 96 114 114 LYS LYS A . n A 1 97 LYS 97 115 115 LYS LYS A . n A 1 98 ILE 98 116 116 ILE ILE A . n A 1 99 VAL 99 117 117 VAL VAL A . n A 1 100 SER 100 118 118 SER SER A . n A 1 101 ASP 101 119 119 ASP ASP A . n A 1 102 GLY 102 120 120 GLY GLY A . n A 1 103 ASN 103 121 121 ASN ASN A . n A 1 104 GLY 104 122 122 GLY GLY A . n A 1 105 MET 105 123 123 MET MET A . n A 1 106 ASN 106 124 124 ASN ASN A . n A 1 107 ALA 107 125 125 ALA ALA A . n A 1 108 TRP 108 126 126 TRP TRP A . n A 1 109 VAL 109 127 127 VAL VAL A . n A 1 110 ALA 110 128 128 ALA ALA A . n A 1 111 TRP 111 129 129 TRP TRP A . n A 1 112 ARG 112 130 130 ARG ARG A . n A 1 113 ASN 113 131 131 ASN ASN A . n A 1 114 ARG 114 132 132 ARG ARG A . n A 1 115 CYS 115 133 133 CYS CYS A . n A 1 116 LYS 116 134 134 LYS LYS A . n A 1 117 GLY 117 135 135 GLY GLY A . n A 1 118 THR 118 136 136 THR THR A . n A 1 119 ASP 119 137 137 ASP ASP A . n A 1 120 VAL 120 138 138 VAL VAL A . n A 1 121 GLN 121 139 139 GLN GLN A . n A 1 122 ALA 122 140 140 ALA ALA A . n A 1 123 TRP 123 141 141 TRP TRP A . n A 1 124 ILE 124 142 142 ILE ILE A . n A 1 125 ARG 125 143 143 ARG ARG A . n A 1 126 GLY 126 144 144 GLY GLY A . n A 1 127 CYS 127 145 145 CYS CYS A . n A 1 128 ARG 128 146 146 ARG ARG A . n A 1 129 LEU 129 147 147 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SEY 1 201 201 SEY SEY A . C 2 SEY 1 202 301 SEY SEY A . D 2 SEY 1 203 401 SEY SEY A . E 2 SEY 1 204 501 SEY SEY A . F 2 SEY 1 205 601 SEY SEY A . G 2 SEY 1 206 701 SEY SEY A . H 3 NA 1 207 1 NA NA A . I 4 CL 1 208 1 CL CL A . J 4 CL 1 209 2 CL CL A . K 4 CL 1 210 3 CL CL A . L 4 CL 1 211 4 CL CL A . M 4 CL 1 212 5 CL CL A . N 5 HOH 1 301 105 HOH HOH A . N 5 HOH 2 302 85 HOH HOH A . N 5 HOH 3 303 115 HOH HOH A . N 5 HOH 4 304 17 HOH HOH A . N 5 HOH 5 305 49 HOH HOH A . N 5 HOH 6 306 93 HOH HOH A . N 5 HOH 7 307 33 HOH HOH A . N 5 HOH 8 308 47 HOH HOH A . N 5 HOH 9 309 37 HOH HOH A . N 5 HOH 10 310 88 HOH HOH A . N 5 HOH 11 311 34 HOH HOH A . N 5 HOH 12 312 92 HOH HOH A . N 5 HOH 13 313 106 HOH HOH A . N 5 HOH 14 314 81 HOH HOH A . N 5 HOH 15 315 55 HOH HOH A . N 5 HOH 16 316 111 HOH HOH A . N 5 HOH 17 317 107 HOH HOH A . N 5 HOH 18 318 94 HOH HOH A . N 5 HOH 19 319 58 HOH HOH A . N 5 HOH 20 320 30 HOH HOH A . N 5 HOH 21 321 4 HOH HOH A . N 5 HOH 22 322 104 HOH HOH A . N 5 HOH 23 323 1 HOH HOH A . N 5 HOH 24 324 103 HOH HOH A . N 5 HOH 25 325 29 HOH HOH A . N 5 HOH 26 326 62 HOH HOH A . N 5 HOH 27 327 114 HOH HOH A . N 5 HOH 28 328 24 HOH HOH A . N 5 HOH 29 329 50 HOH HOH A . N 5 HOH 30 330 98 HOH HOH A . N 5 HOH 31 331 13 HOH HOH A . N 5 HOH 32 332 38 HOH HOH A . N 5 HOH 33 333 21 HOH HOH A . N 5 HOH 34 334 86 HOH HOH A . N 5 HOH 35 335 16 HOH HOH A . N 5 HOH 36 336 44 HOH HOH A . N 5 HOH 37 337 23 HOH HOH A . N 5 HOH 38 338 100 HOH HOH A . N 5 HOH 39 339 72 HOH HOH A . N 5 HOH 40 340 19 HOH HOH A . N 5 HOH 41 341 64 HOH HOH A . N 5 HOH 42 342 112 HOH HOH A . N 5 HOH 43 343 12 HOH HOH A . N 5 HOH 44 344 59 HOH HOH A . N 5 HOH 45 345 90 HOH HOH A . N 5 HOH 46 346 20 HOH HOH A . N 5 HOH 47 347 27 HOH HOH A . N 5 HOH 48 348 101 HOH HOH A . N 5 HOH 49 349 18 HOH HOH A . N 5 HOH 50 350 51 HOH HOH A . N 5 HOH 51 351 41 HOH HOH A . N 5 HOH 52 352 116 HOH HOH A . N 5 HOH 53 353 7 HOH HOH A . N 5 HOH 54 354 22 HOH HOH A . N 5 HOH 55 355 36 HOH HOH A . N 5 HOH 56 356 3 HOH HOH A . N 5 HOH 57 357 14 HOH HOH A . N 5 HOH 58 358 54 HOH HOH A . N 5 HOH 59 359 42 HOH HOH A . N 5 HOH 60 360 31 HOH HOH A . N 5 HOH 61 361 71 HOH HOH A . N 5 HOH 62 362 6 HOH HOH A . N 5 HOH 63 363 8 HOH HOH A . N 5 HOH 64 364 109 HOH HOH A . N 5 HOH 65 365 39 HOH HOH A . N 5 HOH 66 366 78 HOH HOH A . N 5 HOH 67 367 87 HOH HOH A . N 5 HOH 68 368 46 HOH HOH A . N 5 HOH 69 369 35 HOH HOH A . N 5 HOH 70 370 32 HOH HOH A . N 5 HOH 71 371 69 HOH HOH A . N 5 HOH 72 372 96 HOH HOH A . N 5 HOH 73 373 5 HOH HOH A . N 5 HOH 74 374 77 HOH HOH A . N 5 HOH 75 375 10 HOH HOH A . N 5 HOH 76 376 75 HOH HOH A . N 5 HOH 77 377 70 HOH HOH A . N 5 HOH 78 378 97 HOH HOH A . N 5 HOH 79 379 43 HOH HOH A . N 5 HOH 80 380 99 HOH HOH A . N 5 HOH 81 381 84 HOH HOH A . N 5 HOH 82 382 11 HOH HOH A . N 5 HOH 83 383 26 HOH HOH A . N 5 HOH 84 384 53 HOH HOH A . N 5 HOH 85 385 48 HOH HOH A . N 5 HOH 86 386 52 HOH HOH A . N 5 HOH 87 387 2 HOH HOH A . N 5 HOH 88 388 63 HOH HOH A . N 5 HOH 89 389 66 HOH HOH A . N 5 HOH 90 390 9 HOH HOH A . N 5 HOH 91 391 60 HOH HOH A . N 5 HOH 92 392 67 HOH HOH A . N 5 HOH 93 393 108 HOH HOH A . N 5 HOH 94 394 40 HOH HOH A . N 5 HOH 95 395 25 HOH HOH A . N 5 HOH 96 396 68 HOH HOH A . N 5 HOH 97 397 15 HOH HOH A . N 5 HOH 98 398 56 HOH HOH A . N 5 HOH 99 399 82 HOH HOH A . N 5 HOH 100 400 102 HOH HOH A . N 5 HOH 101 401 110 HOH HOH A . N 5 HOH 102 402 76 HOH HOH A . N 5 HOH 103 403 28 HOH HOH A . N 5 HOH 104 404 95 HOH HOH A . N 5 HOH 105 405 73 HOH HOH A . N 5 HOH 106 406 65 HOH HOH A . N 5 HOH 107 407 113 HOH HOH A . N 5 HOH 108 408 45 HOH HOH A . N 5 HOH 109 409 83 HOH HOH A . N 5 HOH 110 410 80 HOH HOH A . N 5 HOH 111 411 89 HOH HOH A . N 5 HOH 112 412 91 HOH HOH A . N 5 HOH 113 413 61 HOH HOH A . N 5 HOH 114 414 74 HOH HOH A . N 5 HOH 115 415 57 HOH HOH A . N 5 HOH 116 416 79 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 290 ? 1 MORE -25 ? 1 'SSA (A^2)' 6590 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 316 ? N HOH . 2 1 A HOH 340 ? N HOH . 3 1 A HOH 368 ? N HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A SER 60 ? A SER 78 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? A CYS 64 ? A CYS 82 ? 1_555 88.3 ? 2 O ? A SER 60 ? A SER 78 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 OG ? A SER 72 ? A SER 90 ? 1_555 90.3 ? 3 O ? A CYS 64 ? A CYS 82 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 OG ? A SER 72 ? A SER 90 ? 1_555 167.5 ? 4 O ? A SER 60 ? A SER 78 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? A ARG 73 ? A ARG 91 ? 1_555 94.2 ? 5 O ? A CYS 64 ? A CYS 82 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? A ARG 73 ? A ARG 91 ? 1_555 91.4 ? 6 OG ? A SER 72 ? A SER 90 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? A ARG 73 ? A ARG 91 ? 1_555 101.1 ? 7 O ? A SER 60 ? A SER 78 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? N HOH . ? A HOH 373 ? 1_555 96.1 ? 8 O ? A CYS 64 ? A CYS 82 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? N HOH . ? A HOH 373 ? 1_555 86.8 ? 9 OG ? A SER 72 ? A SER 90 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? N HOH . ? A HOH 373 ? 1_555 81.0 ? 10 O ? A ARG 73 ? A ARG 91 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? N HOH . ? A HOH 373 ? 1_555 169.6 ? 11 O ? A SER 60 ? A SER 78 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? N HOH . ? A HOH 383 ? 1_555 173.1 ? 12 O ? A CYS 64 ? A CYS 82 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? N HOH . ? A HOH 383 ? 1_555 98.3 ? 13 OG ? A SER 72 ? A SER 90 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? N HOH . ? A HOH 383 ? 1_555 82.9 ? 14 O ? A ARG 73 ? A ARG 91 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? N HOH . ? A HOH 383 ? 1_555 87.5 ? 15 O ? N HOH . ? A HOH 373 ? 1_555 NA ? H NA . ? A NA 207 ? 1_555 O ? N HOH . ? A HOH 383 ? 1_555 82.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-08-11 2 'Structure model' 1 1 2022-08-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.year' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0253 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 5 # _pdbx_entry_details.entry_id 7CQO _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id SEY _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id SEY _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 selenourea SEY 3 'SODIUM ION' NA 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #