HEADER OXIDOREDUCTASE 14-AUG-20 7CS9 TITLE ATPRR1 IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PINORESINOL REDUCTASE 1; COMPND 3 CHAIN: B, C, A, D; COMPND 4 SYNONYM: ATPRR1,(+)-PINORESINOL REDUCTASE,(-)-PINORESINOL REDUCTASE, COMPND 5 PINORESINOL-LARICIRESINOL REDUCTASE 1,ATPLR1; COMPND 6 EC: 1.23.1.1,1.23.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PRR1, PLR1, AT1G32100, F3C3.10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATPRR1, DIMER, PLANT PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SHAO,P.ZHANG REVDAT 2 29-NOV-23 7CS9 1 REMARK REVDAT 1 09-JUN-21 7CS9 0 JRNL AUTH Y.XIAO,K.SHAO,J.ZHOU,L.WANG,X.MA,D.WU,Y.YANG,J.CHEN,J.FENG, JRNL AUTH 2 S.QIU,Z.LV,L.ZHANG,P.ZHANG,W.CHEN JRNL TITL STRUCTURE-BASED ENGINEERING OF SUBSTRATE SPECIFICITY FOR JRNL TITL 2 PINORESINOL-LARICIRESINOL REDUCTASES. JRNL REF NAT COMMUN V. 12 2828 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33990581 JRNL DOI 10.1038/S41467-021-23095-Y REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.327 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2707 - 6.7406 0.99 2830 155 0.1702 0.1822 REMARK 3 2 6.7406 - 5.3545 1.00 2736 145 0.2039 0.2811 REMARK 3 3 5.3545 - 4.6789 1.00 2693 142 0.1864 0.2466 REMARK 3 4 4.6789 - 4.2517 1.00 2660 148 0.1748 0.2178 REMARK 3 5 4.2517 - 3.9472 1.00 2670 142 0.2067 0.2741 REMARK 3 6 3.9472 - 3.7147 1.00 2656 138 0.2329 0.3378 REMARK 3 7 3.7147 - 3.5288 1.00 2655 142 0.2552 0.3297 REMARK 3 8 3.5288 - 3.3753 1.00 2638 141 0.2578 0.3726 REMARK 3 9 3.3753 - 3.2454 1.00 2660 141 0.2736 0.3475 REMARK 3 10 3.2454 - 3.1335 1.00 2619 140 0.2862 0.3911 REMARK 3 11 3.1335 - 3.0355 1.00 2610 137 0.2930 0.3560 REMARK 3 12 3.0355 - 2.9488 1.00 2636 153 0.3031 0.3434 REMARK 3 13 2.9488 - 2.8712 1.00 2620 132 0.3052 0.3591 REMARK 3 14 2.8712 - 2.8012 1.00 2613 144 0.2948 0.3624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.432 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.004 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 9752 REMARK 3 ANGLE : 1.293 13190 REMARK 3 CHIRALITY : 0.065 1487 REMARK 3 PLANARITY : 0.008 1707 REMARK 3 DIHEDRAL : 16.271 5910 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.271 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.28300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1QYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM CHLORIDE, 20% W/V PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.86350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.02300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.45800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.02300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.86350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.45800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLU B 3 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 ARG B 6 REMARK 465 THR B 7 REMARK 465 GLU B 8 REMARK 465 GLY B 91 REMARK 465 VAL B 92 REMARK 465 HIS B 93 REMARK 465 PHE B 94 REMARK 465 ARG B 95 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 GLU C 3 REMARK 465 SER C 4 REMARK 465 LYS C 5 REMARK 465 ARG C 6 REMARK 465 THR C 7 REMARK 465 GLU C 8 REMARK 465 GLY C 91 REMARK 465 VAL C 92 REMARK 465 HIS C 93 REMARK 465 PHE C 94 REMARK 465 ARG C 95 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 GLU A 8 REMARK 465 GLY A 91 REMARK 465 VAL A 92 REMARK 465 HIS A 93 REMARK 465 PHE A 94 REMARK 465 ARG A 95 REMARK 465 SER A 96 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 GLU D 3 REMARK 465 SER D 4 REMARK 465 LYS D 5 REMARK 465 ARG D 6 REMARK 465 THR D 7 REMARK 465 GLU D 8 REMARK 465 GLY D 91 REMARK 465 VAL D 92 REMARK 465 HIS D 93 REMARK 465 PHE D 94 REMARK 465 ARG D 95 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 44 CG1 CG2 CD1 REMARK 470 VAL B 178 CG1 CG2 REMARK 470 ILE A 44 CG1 CG2 CD1 REMARK 470 VAL A 178 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 306 NH1 ARG C 308 1.34 REMARK 500 CZ TYR C 306 NH1 ARG C 308 1.66 REMARK 500 CE2 TYR C 306 NH1 ARG C 308 1.81 REMARK 500 O MET D 130 NH2 ARG D 138 2.02 REMARK 500 O LYS B 184 NZ LYS B 247 2.03 REMARK 500 OE2 GLU A 242 NZ LYS A 251 2.04 REMARK 500 OE1 GLU B 35 NH2 ARG B 63 2.06 REMARK 500 CE2 TYR C 306 CZ ARG C 308 2.06 REMARK 500 CZ TYR C 306 CZ ARG C 308 2.08 REMARK 500 NE2 GLN B 73 OE2 GLU B 111 2.12 REMARK 500 OD2 ASP C 204 NZ LYS C 207 2.17 REMARK 500 O VAL C 195 OG1 THR C 233 2.17 REMARK 500 O ALA D 133 NH1 ARG D 138 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG C 117 NE ARG C 117 CZ -0.098 REMARK 500 ARG C 117 CZ ARG C 117 NH1 -0.090 REMARK 500 LYS C 196 CB LYS C 196 CG 0.187 REMARK 500 PRO A 269 CD PRO A 269 N -0.240 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 45 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 LEU C 232 CB - CG - CD1 ANGL. DEV. = -18.3 DEGREES REMARK 500 LEU C 300 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 LEU A 134 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG D 129 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 10 89.25 75.38 REMARK 500 PRO B 42 68.41 -57.35 REMARK 500 GLU B 43 -94.89 -87.50 REMARK 500 ILE B 44 -144.92 -73.52 REMARK 500 PHE B 123 25.81 -142.05 REMARK 500 VAL B 178 -2.60 71.38 REMARK 500 GLU B 185 -33.50 -143.86 REMARK 500 GLU B 264 -77.35 -34.63 REMARK 500 PRO B 269 61.85 -50.01 REMARK 500 GLU C 47 92.11 50.20 REMARK 500 ALA C 88 76.94 -152.64 REMARK 500 MET C 130 58.90 -91.66 REMARK 500 MET C 177 -166.27 -66.41 REMARK 500 VAL C 178 -9.41 57.35 REMARK 500 GLU C 185 -44.07 -140.86 REMARK 500 GLU C 250 98.79 -68.89 REMARK 500 ASP C 288 20.02 -58.13 REMARK 500 MET C 315 -9.98 -57.71 REMARK 500 THR A 10 87.92 69.21 REMARK 500 ARG A 117 139.13 -170.82 REMARK 500 PHE A 123 24.12 -142.55 REMARK 500 MET A 130 35.17 -78.15 REMARK 500 LEU A 174 51.63 24.87 REMARK 500 VAL A 178 -14.32 78.55 REMARK 500 GLU A 185 -40.75 -135.34 REMARK 500 GLN A 265 -102.56 -146.21 REMARK 500 MET A 266 29.67 48.77 REMARK 500 PRO A 269 47.69 -49.58 REMARK 500 SER D 121 94.48 -64.45 REMARK 500 MET D 130 33.39 -85.12 REMARK 500 GLU D 185 -34.04 -138.84 REMARK 500 ASP D 229 -3.86 -58.70 REMARK 500 VAL D 231 90.21 -67.58 REMARK 500 GLU D 267 96.09 97.61 REMARK 500 ILE D 268 -55.44 -22.17 REMARK 500 LYS D 305 94.76 -69.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 43 ILE B 44 132.46 REMARK 500 ILE B 44 GLY B 45 -128.92 REMARK 500 ILE B 263 GLU B 264 -145.11 REMARK 500 GLU B 264 GLN B 265 144.79 REMARK 500 PRO B 269 HIS B 270 145.60 REMARK 500 GLU A 264 GLN A 265 129.65 REMARK 500 PRO A 269 HIS A 270 139.59 REMARK 500 GLN D 265 MET D 266 -149.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 7CS9 B 1 317 UNP Q9FVQ6 PILR1_ARATH 1 317 DBREF 7CS9 C 1 317 UNP Q9FVQ6 PILR1_ARATH 1 317 DBREF 7CS9 A 1 317 UNP Q9FVQ6 PILR1_ARATH 1 317 DBREF 7CS9 D 1 317 UNP Q9FVQ6 PILR1_ARATH 1 317 SEQRES 1 B 317 MET GLY GLU SER LYS ARG THR GLU LYS THR ARG VAL LEU SEQRES 2 B 317 VAL VAL GLY ALA THR GLY TYR ILE GLY LYS ARG ILE VAL SEQRES 3 B 317 ARG ALA CYS LEU ALA GLU GLY HIS GLU THR TYR VAL LEU SEQRES 4 B 317 GLN ARG PRO GLU ILE GLY LEU GLU ILE GLU LYS VAL GLN SEQRES 5 B 317 LEU PHE LEU SER PHE LYS LYS LEU GLY ALA ARG ILE VAL SEQRES 6 B 317 GLU GLY SER PHE SER ASP HIS GLN SER LEU VAL SER ALA SEQRES 7 B 317 VAL LYS LEU VAL ASP VAL VAL VAL SER ALA MET SER GLY SEQRES 8 B 317 VAL HIS PHE ARG SER HIS ASN ILE LEU VAL GLN LEU LYS SEQRES 9 B 317 LEU VAL GLU ALA ILE LYS GLU ALA GLY ASN VAL LYS ARG SEQRES 10 B 317 PHE LEU PRO SER GLU PHE GLY MET ASP PRO PRO ARG MET SEQRES 11 B 317 GLY HIS ALA LEU PRO PRO GLY ARG GLU THR PHE ASP GLN SEQRES 12 B 317 LYS MET GLU VAL ARG GLN ALA ILE GLU ALA ALA GLY ILE SEQRES 13 B 317 PRO TYR THR TYR VAL VAL GLY ALA CYS PHE ALA ALA TYR SEQRES 14 B 317 PHE ALA GLY ASN LEU SER GLN MET VAL THR LEU LEU PRO SEQRES 15 B 317 PRO LYS GLU LYS VAL ASN ILE TYR GLY ASP GLY ASN VAL SEQRES 16 B 317 LYS VAL VAL PHE ALA ASP GLU ASP ASP ILE ALA LYS TYR SEQRES 17 B 317 THR ALA LYS THR LEU ASN ASP PRO ARG THR LEU ASN LYS SEQRES 18 B 317 THR VAL ASN ILE ARG PRO PRO ASP ASN VAL LEU THR GLN SEQRES 19 B 317 LEU GLU LEU VAL GLN ILE TRP GLU LYS LEU THR GLY LYS SEQRES 20 B 317 GLU LEU GLU LYS THR ASN ILE ALA ALA GLN ASP PHE LEU SEQRES 21 B 317 ALA ASN ILE GLU GLN MET GLU ILE PRO HIS GLN ALA GLY SEQRES 22 B 317 ILE GLY HIS PHE TYR HIS ILE PHE TYR GLU GLY CYS LEU SEQRES 23 B 317 THR ASP HIS GLU VAL GLY GLU ASP GLU GLU ALA SER SER SEQRES 24 B 317 LEU TYR PRO ASP VAL LYS TYR LYS ARG MET ASP ASP TYR SEQRES 25 B 317 LEU ARG MET PHE LEU SEQRES 1 C 317 MET GLY GLU SER LYS ARG THR GLU LYS THR ARG VAL LEU SEQRES 2 C 317 VAL VAL GLY ALA THR GLY TYR ILE GLY LYS ARG ILE VAL SEQRES 3 C 317 ARG ALA CYS LEU ALA GLU GLY HIS GLU THR TYR VAL LEU SEQRES 4 C 317 GLN ARG PRO GLU ILE GLY LEU GLU ILE GLU LYS VAL GLN SEQRES 5 C 317 LEU PHE LEU SER PHE LYS LYS LEU GLY ALA ARG ILE VAL SEQRES 6 C 317 GLU GLY SER PHE SER ASP HIS GLN SER LEU VAL SER ALA SEQRES 7 C 317 VAL LYS LEU VAL ASP VAL VAL VAL SER ALA MET SER GLY SEQRES 8 C 317 VAL HIS PHE ARG SER HIS ASN ILE LEU VAL GLN LEU LYS SEQRES 9 C 317 LEU VAL GLU ALA ILE LYS GLU ALA GLY ASN VAL LYS ARG SEQRES 10 C 317 PHE LEU PRO SER GLU PHE GLY MET ASP PRO PRO ARG MET SEQRES 11 C 317 GLY HIS ALA LEU PRO PRO GLY ARG GLU THR PHE ASP GLN SEQRES 12 C 317 LYS MET GLU VAL ARG GLN ALA ILE GLU ALA ALA GLY ILE SEQRES 13 C 317 PRO TYR THR TYR VAL VAL GLY ALA CYS PHE ALA ALA TYR SEQRES 14 C 317 PHE ALA GLY ASN LEU SER GLN MET VAL THR LEU LEU PRO SEQRES 15 C 317 PRO LYS GLU LYS VAL ASN ILE TYR GLY ASP GLY ASN VAL SEQRES 16 C 317 LYS VAL VAL PHE ALA ASP GLU ASP ASP ILE ALA LYS TYR SEQRES 17 C 317 THR ALA LYS THR LEU ASN ASP PRO ARG THR LEU ASN LYS SEQRES 18 C 317 THR VAL ASN ILE ARG PRO PRO ASP ASN VAL LEU THR GLN SEQRES 19 C 317 LEU GLU LEU VAL GLN ILE TRP GLU LYS LEU THR GLY LYS SEQRES 20 C 317 GLU LEU GLU LYS THR ASN ILE ALA ALA GLN ASP PHE LEU SEQRES 21 C 317 ALA ASN ILE GLU GLN MET GLU ILE PRO HIS GLN ALA GLY SEQRES 22 C 317 ILE GLY HIS PHE TYR HIS ILE PHE TYR GLU GLY CYS LEU SEQRES 23 C 317 THR ASP HIS GLU VAL GLY GLU ASP GLU GLU ALA SER SER SEQRES 24 C 317 LEU TYR PRO ASP VAL LYS TYR LYS ARG MET ASP ASP TYR SEQRES 25 C 317 LEU ARG MET PHE LEU SEQRES 1 A 317 MET GLY GLU SER LYS ARG THR GLU LYS THR ARG VAL LEU SEQRES 2 A 317 VAL VAL GLY ALA THR GLY TYR ILE GLY LYS ARG ILE VAL SEQRES 3 A 317 ARG ALA CYS LEU ALA GLU GLY HIS GLU THR TYR VAL LEU SEQRES 4 A 317 GLN ARG PRO GLU ILE GLY LEU GLU ILE GLU LYS VAL GLN SEQRES 5 A 317 LEU PHE LEU SER PHE LYS LYS LEU GLY ALA ARG ILE VAL SEQRES 6 A 317 GLU GLY SER PHE SER ASP HIS GLN SER LEU VAL SER ALA SEQRES 7 A 317 VAL LYS LEU VAL ASP VAL VAL VAL SER ALA MET SER GLY SEQRES 8 A 317 VAL HIS PHE ARG SER HIS ASN ILE LEU VAL GLN LEU LYS SEQRES 9 A 317 LEU VAL GLU ALA ILE LYS GLU ALA GLY ASN VAL LYS ARG SEQRES 10 A 317 PHE LEU PRO SER GLU PHE GLY MET ASP PRO PRO ARG MET SEQRES 11 A 317 GLY HIS ALA LEU PRO PRO GLY ARG GLU THR PHE ASP GLN SEQRES 12 A 317 LYS MET GLU VAL ARG GLN ALA ILE GLU ALA ALA GLY ILE SEQRES 13 A 317 PRO TYR THR TYR VAL VAL GLY ALA CYS PHE ALA ALA TYR SEQRES 14 A 317 PHE ALA GLY ASN LEU SER GLN MET VAL THR LEU LEU PRO SEQRES 15 A 317 PRO LYS GLU LYS VAL ASN ILE TYR GLY ASP GLY ASN VAL SEQRES 16 A 317 LYS VAL VAL PHE ALA ASP GLU ASP ASP ILE ALA LYS TYR SEQRES 17 A 317 THR ALA LYS THR LEU ASN ASP PRO ARG THR LEU ASN LYS SEQRES 18 A 317 THR VAL ASN ILE ARG PRO PRO ASP ASN VAL LEU THR GLN SEQRES 19 A 317 LEU GLU LEU VAL GLN ILE TRP GLU LYS LEU THR GLY LYS SEQRES 20 A 317 GLU LEU GLU LYS THR ASN ILE ALA ALA GLN ASP PHE LEU SEQRES 21 A 317 ALA ASN ILE GLU GLN MET GLU ILE PRO HIS GLN ALA GLY SEQRES 22 A 317 ILE GLY HIS PHE TYR HIS ILE PHE TYR GLU GLY CYS LEU SEQRES 23 A 317 THR ASP HIS GLU VAL GLY GLU ASP GLU GLU ALA SER SER SEQRES 24 A 317 LEU TYR PRO ASP VAL LYS TYR LYS ARG MET ASP ASP TYR SEQRES 25 A 317 LEU ARG MET PHE LEU SEQRES 1 D 317 MET GLY GLU SER LYS ARG THR GLU LYS THR ARG VAL LEU SEQRES 2 D 317 VAL VAL GLY ALA THR GLY TYR ILE GLY LYS ARG ILE VAL SEQRES 3 D 317 ARG ALA CYS LEU ALA GLU GLY HIS GLU THR TYR VAL LEU SEQRES 4 D 317 GLN ARG PRO GLU ILE GLY LEU GLU ILE GLU LYS VAL GLN SEQRES 5 D 317 LEU PHE LEU SER PHE LYS LYS LEU GLY ALA ARG ILE VAL SEQRES 6 D 317 GLU GLY SER PHE SER ASP HIS GLN SER LEU VAL SER ALA SEQRES 7 D 317 VAL LYS LEU VAL ASP VAL VAL VAL SER ALA MET SER GLY SEQRES 8 D 317 VAL HIS PHE ARG SER HIS ASN ILE LEU VAL GLN LEU LYS SEQRES 9 D 317 LEU VAL GLU ALA ILE LYS GLU ALA GLY ASN VAL LYS ARG SEQRES 10 D 317 PHE LEU PRO SER GLU PHE GLY MET ASP PRO PRO ARG MET SEQRES 11 D 317 GLY HIS ALA LEU PRO PRO GLY ARG GLU THR PHE ASP GLN SEQRES 12 D 317 LYS MET GLU VAL ARG GLN ALA ILE GLU ALA ALA GLY ILE SEQRES 13 D 317 PRO TYR THR TYR VAL VAL GLY ALA CYS PHE ALA ALA TYR SEQRES 14 D 317 PHE ALA GLY ASN LEU SER GLN MET VAL THR LEU LEU PRO SEQRES 15 D 317 PRO LYS GLU LYS VAL ASN ILE TYR GLY ASP GLY ASN VAL SEQRES 16 D 317 LYS VAL VAL PHE ALA ASP GLU ASP ASP ILE ALA LYS TYR SEQRES 17 D 317 THR ALA LYS THR LEU ASN ASP PRO ARG THR LEU ASN LYS SEQRES 18 D 317 THR VAL ASN ILE ARG PRO PRO ASP ASN VAL LEU THR GLN SEQRES 19 D 317 LEU GLU LEU VAL GLN ILE TRP GLU LYS LEU THR GLY LYS SEQRES 20 D 317 GLU LEU GLU LYS THR ASN ILE ALA ALA GLN ASP PHE LEU SEQRES 21 D 317 ALA ASN ILE GLU GLN MET GLU ILE PRO HIS GLN ALA GLY SEQRES 22 D 317 ILE GLY HIS PHE TYR HIS ILE PHE TYR GLU GLY CYS LEU SEQRES 23 D 317 THR ASP HIS GLU VAL GLY GLU ASP GLU GLU ALA SER SER SEQRES 24 D 317 LEU TYR PRO ASP VAL LYS TYR LYS ARG MET ASP ASP TYR SEQRES 25 D 317 LEU ARG MET PHE LEU HELIX 1 AA1 GLY B 19 GLY B 33 1 15 HELIX 2 AA2 GLU B 47 LYS B 59 1 13 HELIX 3 AA3 ASP B 71 LYS B 80 1 10 HELIX 4 AA4 VAL B 101 GLY B 113 1 13 HELIX 5 AA5 ASP B 126 MET B 130 5 5 HELIX 6 AA6 GLY B 137 GLY B 155 1 19 HELIX 7 AA7 ALA B 167 ALA B 171 1 5 HELIX 8 AA8 ASP B 201 LEU B 213 1 13 HELIX 9 AA9 ASP B 215 LEU B 219 5 5 HELIX 10 AB1 PRO B 227 ASP B 229 5 3 HELIX 11 AB2 GLN B 234 GLY B 246 1 13 HELIX 12 AB3 ALA B 255 LEU B 260 1 6 HELIX 13 AB4 HIS B 270 TYR B 282 1 13 HELIX 14 AB5 GLY B 292 GLU B 295 5 4 HELIX 15 AB6 GLU B 296 TYR B 301 1 6 HELIX 16 AB7 ARG B 308 MET B 315 1 8 HELIX 17 AB8 GLY C 19 GLY C 33 1 15 HELIX 18 AB9 ARG C 41 GLY C 45 5 5 HELIX 19 AC1 GLU C 47 LYS C 59 1 13 HELIX 20 AC2 ASP C 71 LEU C 81 1 11 HELIX 21 AC3 LEU C 100 GLU C 111 1 12 HELIX 22 AC4 ASP C 126 MET C 130 5 5 HELIX 23 AC5 ARG C 138 GLY C 155 1 18 HELIX 24 AC6 ALA C 167 ALA C 171 1 5 HELIX 25 AC7 ASP C 201 LEU C 213 1 13 HELIX 26 AC8 ASP C 215 LEU C 219 5 5 HELIX 27 AC9 PRO C 227 ASP C 229 5 3 HELIX 28 AD1 GLN C 234 GLY C 246 1 13 HELIX 29 AD2 ALA C 255 LEU C 260 1 6 HELIX 30 AD3 ASN C 262 MET C 266 5 5 HELIX 31 AD4 GLU C 267 TYR C 282 1 16 HELIX 32 AD5 GLU C 296 TYR C 301 1 6 HELIX 33 AD6 ARG C 308 MET C 315 1 8 HELIX 34 AD7 GLY A 19 GLU A 32 1 14 HELIX 35 AD8 GLU A 47 LEU A 60 1 14 HELIX 36 AD9 ASP A 71 LEU A 81 1 11 HELIX 37 AE1 VAL A 101 GLY A 113 1 13 HELIX 38 AE2 ASP A 126 ALA A 133 5 8 HELIX 39 AE3 GLY A 137 ALA A 153 1 17 HELIX 40 AE4 ALA A 167 ALA A 171 1 5 HELIX 41 AE5 ASP A 201 LEU A 213 1 13 HELIX 42 AE6 ASN A 214 LEU A 219 5 6 HELIX 43 AE7 PRO A 227 ASP A 229 5 3 HELIX 44 AE8 GLN A 234 GLY A 246 1 13 HELIX 45 AE9 ALA A 255 LEU A 260 1 6 HELIX 46 AF1 HIS A 270 TYR A 282 1 13 HELIX 47 AF2 GLY A 292 GLU A 295 5 4 HELIX 48 AF3 GLU A 296 TYR A 301 1 6 HELIX 49 AF4 ARG A 308 ARG A 314 1 7 HELIX 50 AF5 GLY D 19 GLY D 33 1 15 HELIX 51 AF6 GLU D 47 LEU D 60 1 14 HELIX 52 AF7 ASP D 71 LYS D 80 1 10 HELIX 53 AF8 VAL D 101 GLU D 111 1 11 HELIX 54 AF9 ASP D 126 MET D 130 5 5 HELIX 55 AG1 GLY D 137 ALA D 154 1 18 HELIX 56 AG2 ALA D 167 ALA D 171 1 5 HELIX 57 AG3 ASP D 201 LEU D 213 1 13 HELIX 58 AG4 ASP D 215 LEU D 219 5 5 HELIX 59 AG5 PRO D 227 ASP D 229 5 3 HELIX 60 AG6 GLN D 234 GLY D 246 1 13 HELIX 61 AG7 ALA D 255 ALA D 261 1 7 HELIX 62 AG8 ASN D 262 MET D 266 5 5 HELIX 63 AG9 GLU D 267 TYR D 282 1 16 HELIX 64 AH1 GLY D 292 GLU D 295 5 4 HELIX 65 AH2 GLU D 296 TYR D 301 1 6 HELIX 66 AH3 ARG D 308 MET D 315 1 8 SHEET 1 AA1 5 ARG B 63 GLU B 66 0 SHEET 2 AA1 5 GLU B 35 GLN B 40 1 N GLN B 40 O VAL B 65 SHEET 3 AA1 5 ARG B 11 VAL B 15 1 N VAL B 12 O GLU B 35 SHEET 4 AA1 5 VAL B 84 SER B 87 1 O VAL B 86 N VAL B 15 SHEET 5 AA1 5 ARG B 117 LEU B 119 1 O LEU B 119 N SER B 87 SHEET 1 AA2 2 THR B 159 VAL B 162 0 SHEET 2 AA2 2 LYS B 221 ASN B 224 1 O VAL B 223 N TYR B 160 SHEET 1 AA3 3 CYS B 165 PHE B 166 0 SHEET 2 AA3 3 LYS B 196 ALA B 200 1 O VAL B 198 N CYS B 165 SHEET 3 AA3 3 VAL B 231 THR B 233 -1 O LEU B 232 N VAL B 197 SHEET 1 AA4 2 LYS B 186 TYR B 190 0 SHEET 2 AA4 2 GLU B 250 ILE B 254 1 O THR B 252 N ILE B 189 SHEET 1 AA5 5 ARG C 63 GLU C 66 0 SHEET 2 AA5 5 GLU C 35 GLN C 40 1 N GLN C 40 O VAL C 65 SHEET 3 AA5 5 ARG C 11 VAL C 15 1 N VAL C 12 O TYR C 37 SHEET 4 AA5 5 VAL C 84 SER C 87 1 O VAL C 86 N VAL C 15 SHEET 5 AA5 5 ARG C 117 LEU C 119 1 O LEU C 119 N SER C 87 SHEET 1 AA6 2 TYR C 160 VAL C 162 0 SHEET 2 AA6 2 THR C 222 ASN C 224 1 O VAL C 223 N TYR C 160 SHEET 1 AA7 3 CYS C 165 PHE C 166 0 SHEET 2 AA7 3 LYS C 196 ALA C 200 1 O ALA C 200 N CYS C 165 SHEET 3 AA7 3 VAL C 231 THR C 233 -1 O LEU C 232 N VAL C 197 SHEET 1 AA8 2 LYS C 186 TYR C 190 0 SHEET 2 AA8 2 GLU C 250 ILE C 254 1 O ILE C 254 N ILE C 189 SHEET 1 AA9 5 ARG A 63 GLU A 66 0 SHEET 2 AA9 5 GLU A 35 GLN A 40 1 N GLN A 40 O VAL A 65 SHEET 3 AA9 5 ARG A 11 VAL A 15 1 N VAL A 12 O TYR A 37 SHEET 4 AA9 5 VAL A 84 SER A 87 1 O VAL A 86 N LEU A 13 SHEET 5 AA9 5 ARG A 117 LEU A 119 1 O LEU A 119 N SER A 87 SHEET 1 AB1 2 THR A 159 VAL A 162 0 SHEET 2 AB1 2 LYS A 221 ASN A 224 1 O VAL A 223 N VAL A 162 SHEET 1 AB2 3 CYS A 165 PHE A 166 0 SHEET 2 AB2 3 LYS A 196 ALA A 200 1 O VAL A 198 N CYS A 165 SHEET 3 AB2 3 VAL A 231 THR A 233 -1 O LEU A 232 N VAL A 197 SHEET 1 AB3 2 LYS A 186 TYR A 190 0 SHEET 2 AB3 2 GLU A 250 ILE A 254 1 O ILE A 254 N ILE A 189 SHEET 1 AB4 5 ARG D 63 GLU D 66 0 SHEET 2 AB4 5 GLU D 35 GLN D 40 1 N GLN D 40 O VAL D 65 SHEET 3 AB4 5 ARG D 11 VAL D 15 1 N VAL D 12 O TYR D 37 SHEET 4 AB4 5 VAL D 84 SER D 87 1 O VAL D 86 N VAL D 15 SHEET 5 AB4 5 ARG D 117 LEU D 119 1 O LEU D 119 N SER D 87 SHEET 1 AB5 2 TYR D 160 VAL D 162 0 SHEET 2 AB5 2 THR D 222 ASN D 224 1 O VAL D 223 N TYR D 160 SHEET 1 AB6 3 CYS D 165 PHE D 166 0 SHEET 2 AB6 3 LYS D 196 ALA D 200 1 O VAL D 198 N CYS D 165 SHEET 3 AB6 3 VAL D 231 THR D 233 -1 O LEU D 232 N VAL D 197 SHEET 1 AB7 2 LYS D 186 TYR D 190 0 SHEET 2 AB7 2 GLU D 250 ILE D 254 1 O THR D 252 N ILE D 189 CISPEP 1 PRO B 135 PRO B 136 0 -4.96 CISPEP 2 PRO C 135 PRO C 136 0 2.92 CISPEP 3 PRO A 135 PRO A 136 0 7.87 CISPEP 4 PRO D 135 PRO D 136 0 6.20 CRYST1 81.727 134.916 142.046 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012236 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007040 0.00000