HEADER TRANSLATION 15-AUG-20 7CSL TITLE CRYSTAL STRUCTURE OF THE ARCHAEAL EF1A-EF1B COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR 1-ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EF-1-ALPHA,ELONGATION FACTOR TU,EF-TU; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ELONGATION FACTOR 1-BETA; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: EF-1-BETA,AEF-1BETA; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII OT-3; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT-3; SOURCE 5 GENE: TUF, PH1484, PHCC033; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII OT-3; SOURCE 10 ORGANISM_TAXID: 70601; SOURCE 11 STRAIN: OT-3; SOURCE 12 GENE: EF1B, PH0026.1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSLATION ELONGATION, GUANINE EXCHANGE, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR T.SUZUKI,K.ITO,T.MIYOSHI,R.MURAKAMI,T.UCHIUMI REVDAT 3 29-NOV-23 7CSL 1 REMARK REVDAT 2 28-JUL-21 7CSL 1 JRNL REVDAT 1 23-JUN-21 7CSL 0 JRNL AUTH T.SUZUKI,K.ITO,T.MIYOSHI,R.MURAKAMI,T.UCHIUMI JRNL TITL STRUCTURAL INSIGHTS INTO THE SWITCHING OFF OF THE JRNL TITL 2 INTERACTION BETWEEN THE ARCHAEAL RIBOSOMAL STALK AND AEF1A JRNL TITL 3 BY NUCLEOTIDE EXCHANGE FACTOR AEF1B. JRNL REF J.MOL.BIOL. V. 433 67046 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 33971210 JRNL DOI 10.1016/J.JMB.2021.167046 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 66026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3475 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95000 REMARK 3 B22 (A**2) : -2.78000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : -0.16000 REMARK 3 B13 (A**2) : -0.63000 REMARK 3 B23 (A**2) : 0.55000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.055 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8158 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8124 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11046 ; 1.689 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18780 ; 1.007 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1012 ; 7.252 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 344 ;35.494 ;24.709 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1484 ;16.771 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;18.097 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1266 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8996 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1682 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.891 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H,-K,-L REMARK 3 TWIN FRACTION : 0.109 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70518 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3WY9, 2YY3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-NAOH PH 7.0, 10% W/V REMARK 280 PEG6000, 5% V/V MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 THR A 70 REMARK 465 ILE A 71 REMARK 465 GLU A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 4 REMARK 465 THR B 70 REMARK 465 ILE B 71 REMARK 465 GLU B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 465 HIS B 431 REMARK 465 HIS B 432 REMARK 465 HIS B 433 REMARK 465 HIS B 434 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ASP C 3 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ASP D 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 90 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 40.55 -100.50 REMARK 500 ALA A 104 -148.55 37.21 REMARK 500 THR A 117 -73.58 -59.12 REMARK 500 ASP A 186 116.77 -37.41 REMARK 500 THR A 334 -94.51 -122.74 REMARK 500 HIS A 347 -113.81 38.46 REMARK 500 ASN B 33 37.34 -89.21 REMARK 500 ALA B 104 -128.99 12.20 REMARK 500 LEU B 134 0.47 -67.50 REMARK 500 VAL B 189 -63.87 -104.07 REMARK 500 ALA B 258 -63.60 -29.95 REMARK 500 THR B 334 -98.92 -109.99 REMARK 500 HIS B 347 -119.18 33.84 REMARK 500 THR B 379 123.87 -39.05 REMARK 500 MET B 412 41.59 37.52 REMARK 500 ILE C 46 -72.84 -107.50 REMARK 500 GLU C 86 -87.51 -88.32 REMARK 500 ILE D 46 -77.44 -111.24 REMARK 500 SER D 66 119.33 -160.76 REMARK 500 ASN D 79 17.51 80.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 104 SER A 105 -139.89 REMARK 500 ALA B 104 SER B 105 -142.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 7CSL A 1 428 UNP O59153 EF1A_PYRHO 1 428 DBREF 7CSL B 1 428 UNP O59153 EF1A_PYRHO 1 428 DBREF 7CSL C 1 91 UNP P58748 EF1B_PYRHO 1 91 DBREF 7CSL D 1 91 UNP P58748 EF1B_PYRHO 1 91 SEQADV 7CSL HIS A 429 UNP O59153 EXPRESSION TAG SEQADV 7CSL HIS A 430 UNP O59153 EXPRESSION TAG SEQADV 7CSL HIS A 431 UNP O59153 EXPRESSION TAG SEQADV 7CSL HIS A 432 UNP O59153 EXPRESSION TAG SEQADV 7CSL HIS A 433 UNP O59153 EXPRESSION TAG SEQADV 7CSL HIS A 434 UNP O59153 EXPRESSION TAG SEQADV 7CSL HIS B 429 UNP O59153 EXPRESSION TAG SEQADV 7CSL HIS B 430 UNP O59153 EXPRESSION TAG SEQADV 7CSL HIS B 431 UNP O59153 EXPRESSION TAG SEQADV 7CSL HIS B 432 UNP O59153 EXPRESSION TAG SEQADV 7CSL HIS B 433 UNP O59153 EXPRESSION TAG SEQADV 7CSL HIS B 434 UNP O59153 EXPRESSION TAG SEQRES 1 A 434 MET PRO LYS GLU LYS PRO HIS VAL ASN ILE VAL PHE ILE SEQRES 2 A 434 GLY HIS VAL ASP HIS GLY LYS SER THR THR ILE GLY ARG SEQRES 3 A 434 LEU LEU TYR ASP THR GLY ASN ILE PRO GLU THR ILE ILE SEQRES 4 A 434 LYS LYS PHE GLU GLU MET GLY GLU LYS GLY LYS SER PHE SEQRES 5 A 434 LYS PHE ALA TRP VAL MET ASP ARG LEU LYS GLU GLU ARG SEQRES 6 A 434 GLU ARG GLY ILE THR ILE ASP VAL ALA HIS THR LYS PHE SEQRES 7 A 434 GLU THR PRO HIS ARG TYR ILE THR ILE ILE ASP ALA PRO SEQRES 8 A 434 GLY HIS ARG ASP PHE VAL LYS ASN MET ILE THR GLY ALA SEQRES 9 A 434 SER GLN ALA ASP ALA ALA VAL LEU VAL VAL ALA ALA THR SEQRES 10 A 434 ASP GLY VAL MET PRO GLN THR LYS GLU HIS ALA PHE LEU SEQRES 11 A 434 ALA ARG THR LEU GLY ILE LYS HIS ILE ILE VAL THR ILE SEQRES 12 A 434 ASN LYS MET ASP MET VAL ASN TYR ASP GLN LYS VAL PHE SEQRES 13 A 434 GLU LYS VAL LYS ALA GLN VAL GLU LYS LEU LEU LYS THR SEQRES 14 A 434 LEU GLY TYR LYS ASP PHE PRO VAL ILE PRO THR SER ALA SEQRES 15 A 434 TRP ASN GLY ASP ASN VAL VAL LYS LYS SER ASP LYS MET SEQRES 16 A 434 PRO TRP TYR ASN GLY PRO THR LEU ILE GLU ALA LEU ASP SEQRES 17 A 434 GLN ILE PRO GLU PRO GLU LYS PRO ILE ASP LYS PRO LEU SEQRES 18 A 434 ARG ILE PRO ILE GLN ASP VAL TYR SER ILE LYS GLY VAL SEQRES 19 A 434 GLY THR VAL PRO VAL GLY ARG VAL GLU THR GLY LYS LEU SEQRES 20 A 434 LYS VAL GLY ASP VAL VAL ILE PHE GLU PRO ALA SER THR SEQRES 21 A 434 ILE PHE HIS LYS PRO ILE GLN GLY GLU VAL LYS SER ILE SEQRES 22 A 434 GLU MET HIS HIS GLU PRO LEU GLN GLU ALA LEU PRO GLY SEQRES 23 A 434 ASP ASN ILE GLY PHE ASN VAL ARG GLY VAL SER LYS ASN SEQRES 24 A 434 ASP ILE LYS ARG GLY ASP VAL ALA GLY HIS THR ASP LYS SEQRES 25 A 434 PRO PRO THR VAL VAL ARG THR LYS ASP THR PHE LYS ALA SEQRES 26 A 434 GLN ILE ILE VAL LEU ASN HIS PRO THR ALA ILE THR VAL SEQRES 27 A 434 GLY TYR SER PRO VAL LEU HIS ALA HIS THR ALA GLN ILE SEQRES 28 A 434 PRO VAL ARG PHE GLU GLN ILE LEU ALA LYS VAL ASP PRO SEQRES 29 A 434 ARG THR GLY ASN ILE VAL GLU GLU ASN PRO GLN PHE ILE SEQRES 30 A 434 LYS THR GLY ASP SER ALA ILE VAL VAL LEU ARG PRO MET SEQRES 31 A 434 LYS PRO VAL VAL LEU GLU PRO VAL LYS GLU ILE PRO GLN SEQRES 32 A 434 LEU GLY ARG PHE ALA ILE ARG ASP MET GLY MET THR ILE SEQRES 33 A 434 ALA ALA GLY MET VAL ILE SER ILE GLN LYS GLY GLU HIS SEQRES 34 A 434 HIS HIS HIS HIS HIS SEQRES 1 B 434 MET PRO LYS GLU LYS PRO HIS VAL ASN ILE VAL PHE ILE SEQRES 2 B 434 GLY HIS VAL ASP HIS GLY LYS SER THR THR ILE GLY ARG SEQRES 3 B 434 LEU LEU TYR ASP THR GLY ASN ILE PRO GLU THR ILE ILE SEQRES 4 B 434 LYS LYS PHE GLU GLU MET GLY GLU LYS GLY LYS SER PHE SEQRES 5 B 434 LYS PHE ALA TRP VAL MET ASP ARG LEU LYS GLU GLU ARG SEQRES 6 B 434 GLU ARG GLY ILE THR ILE ASP VAL ALA HIS THR LYS PHE SEQRES 7 B 434 GLU THR PRO HIS ARG TYR ILE THR ILE ILE ASP ALA PRO SEQRES 8 B 434 GLY HIS ARG ASP PHE VAL LYS ASN MET ILE THR GLY ALA SEQRES 9 B 434 SER GLN ALA ASP ALA ALA VAL LEU VAL VAL ALA ALA THR SEQRES 10 B 434 ASP GLY VAL MET PRO GLN THR LYS GLU HIS ALA PHE LEU SEQRES 11 B 434 ALA ARG THR LEU GLY ILE LYS HIS ILE ILE VAL THR ILE SEQRES 12 B 434 ASN LYS MET ASP MET VAL ASN TYR ASP GLN LYS VAL PHE SEQRES 13 B 434 GLU LYS VAL LYS ALA GLN VAL GLU LYS LEU LEU LYS THR SEQRES 14 B 434 LEU GLY TYR LYS ASP PHE PRO VAL ILE PRO THR SER ALA SEQRES 15 B 434 TRP ASN GLY ASP ASN VAL VAL LYS LYS SER ASP LYS MET SEQRES 16 B 434 PRO TRP TYR ASN GLY PRO THR LEU ILE GLU ALA LEU ASP SEQRES 17 B 434 GLN ILE PRO GLU PRO GLU LYS PRO ILE ASP LYS PRO LEU SEQRES 18 B 434 ARG ILE PRO ILE GLN ASP VAL TYR SER ILE LYS GLY VAL SEQRES 19 B 434 GLY THR VAL PRO VAL GLY ARG VAL GLU THR GLY LYS LEU SEQRES 20 B 434 LYS VAL GLY ASP VAL VAL ILE PHE GLU PRO ALA SER THR SEQRES 21 B 434 ILE PHE HIS LYS PRO ILE GLN GLY GLU VAL LYS SER ILE SEQRES 22 B 434 GLU MET HIS HIS GLU PRO LEU GLN GLU ALA LEU PRO GLY SEQRES 23 B 434 ASP ASN ILE GLY PHE ASN VAL ARG GLY VAL SER LYS ASN SEQRES 24 B 434 ASP ILE LYS ARG GLY ASP VAL ALA GLY HIS THR ASP LYS SEQRES 25 B 434 PRO PRO THR VAL VAL ARG THR LYS ASP THR PHE LYS ALA SEQRES 26 B 434 GLN ILE ILE VAL LEU ASN HIS PRO THR ALA ILE THR VAL SEQRES 27 B 434 GLY TYR SER PRO VAL LEU HIS ALA HIS THR ALA GLN ILE SEQRES 28 B 434 PRO VAL ARG PHE GLU GLN ILE LEU ALA LYS VAL ASP PRO SEQRES 29 B 434 ARG THR GLY ASN ILE VAL GLU GLU ASN PRO GLN PHE ILE SEQRES 30 B 434 LYS THR GLY ASP SER ALA ILE VAL VAL LEU ARG PRO MET SEQRES 31 B 434 LYS PRO VAL VAL LEU GLU PRO VAL LYS GLU ILE PRO GLN SEQRES 32 B 434 LEU GLY ARG PHE ALA ILE ARG ASP MET GLY MET THR ILE SEQRES 33 B 434 ALA ALA GLY MET VAL ILE SER ILE GLN LYS GLY GLU HIS SEQRES 34 B 434 HIS HIS HIS HIS HIS SEQRES 1 C 91 MET SER ASP PHE ASN LEU VAL GLY VAL ILE ARG VAL MET SEQRES 2 C 91 PRO THR ASP PRO ASP VAL ASN LEU ASP GLU LEU GLU GLU SEQRES 3 C 91 LYS LEU LYS LYS VAL ILE PRO GLU LYS TYR GLY LEU ALA SEQRES 4 C 91 LYS VAL GLU ARG GLU PRO ILE ALA PHE GLY LEU VAL ALA SEQRES 5 C 91 LEU LYS PHE TYR VAL LEU GLY ARG ASP GLU GLU GLY TYR SEQRES 6 C 91 SER PHE ASP GLU VAL ALA GLU LYS PHE GLU GLU VAL GLU SEQRES 7 C 91 ASN VAL GLU SER ALA GLU VAL GLU THR VAL SER ARG ILE SEQRES 1 D 91 MET SER ASP PHE ASN LEU VAL GLY VAL ILE ARG VAL MET SEQRES 2 D 91 PRO THR ASP PRO ASP VAL ASN LEU ASP GLU LEU GLU GLU SEQRES 3 D 91 LYS LEU LYS LYS VAL ILE PRO GLU LYS TYR GLY LEU ALA SEQRES 4 D 91 LYS VAL GLU ARG GLU PRO ILE ALA PHE GLY LEU VAL ALA SEQRES 5 D 91 LEU LYS PHE TYR VAL LEU GLY ARG ASP GLU GLU GLY TYR SEQRES 6 D 91 SER PHE ASP GLU VAL ALA GLU LYS PHE GLU GLU VAL GLU SEQRES 7 D 91 ASN VAL GLU SER ALA GLU VAL GLU THR VAL SER ARG ILE FORMUL 5 HOH *251(H2 O) HELIX 1 AA1 GLY A 19 THR A 31 1 13 HELIX 2 AA2 PRO A 35 GLU A 44 1 10 HELIX 3 AA3 GLY A 49 GLY A 68 1 20 HELIX 4 AA4 HIS A 93 ASP A 95 5 3 HELIX 5 AA5 PHE A 96 GLY A 103 1 8 HELIX 6 AA6 GLN A 123 LEU A 134 1 12 HELIX 7 AA7 LYS A 145 ASN A 150 5 6 HELIX 8 AA8 ASP A 152 LEU A 170 1 19 HELIX 9 AA9 THR A 202 GLN A 209 1 8 HELIX 10 AB1 PRO A 257 HIS A 263 1 7 HELIX 11 AB2 SER A 297 ILE A 301 5 5 HELIX 12 AB3 ILE A 401 LEU A 404 5 4 HELIX 13 AB4 GLY B 19 THR B 31 1 13 HELIX 14 AB5 PRO B 35 GLU B 44 1 10 HELIX 15 AB6 GLY B 49 GLY B 68 1 20 HELIX 16 AB7 HIS B 93 ASP B 95 5 3 HELIX 17 AB8 PHE B 96 GLY B 103 1 8 HELIX 18 AB9 GLN B 123 LEU B 134 1 12 HELIX 19 AC1 LYS B 145 ASN B 150 5 6 HELIX 20 AC2 ASP B 152 LEU B 170 1 19 HELIX 21 AC3 THR B 202 GLN B 209 1 8 HELIX 22 AC4 PRO B 257 HIS B 263 1 7 HELIX 23 AC5 SER B 297 ILE B 301 5 5 HELIX 24 AC6 ILE B 401 LEU B 404 5 4 HELIX 25 AC7 ASN C 20 LYS C 30 1 11 HELIX 26 AC8 SER C 66 GLU C 76 1 11 HELIX 27 AC9 ASN D 20 LYS D 30 1 11 HELIX 28 AD1 SER D 66 VAL D 77 1 12 SHEET 1 AA1 6 THR A 76 GLU A 79 0 SHEET 2 AA1 6 TYR A 84 ASP A 89 -1 O ILE A 85 N PHE A 78 SHEET 3 AA1 6 HIS A 7 GLY A 14 1 N PHE A 12 O ILE A 88 SHEET 4 AA1 6 ALA A 109 ALA A 115 1 O VAL A 111 N ILE A 13 SHEET 5 AA1 6 HIS A 138 ASN A 144 1 O THR A 142 N VAL A 114 SHEET 6 AA1 6 VAL A 177 PRO A 179 1 O ILE A 178 N VAL A 141 SHEET 1 AA2 8 GLU A 278 LEU A 280 0 SHEET 2 AA2 8 GLN A 267 MET A 275 -1 N ILE A 273 O LEU A 280 SHEET 3 AA2 8 ASN A 288 VAL A 293 -1 O GLY A 290 N GLU A 274 SHEET 4 AA2 8 GLY A 235 ARG A 241 -1 N GLY A 240 O ILE A 289 SHEET 5 AA2 8 ILE A 223 ILE A 231 -1 N GLN A 226 O VAL A 239 SHEET 6 AA2 8 VAL A 306 HIS A 309 -1 O ALA A 307 N ILE A 223 SHEET 7 AA2 8 VAL A 252 GLU A 256 -1 N ILE A 254 O GLY A 308 SHEET 8 AA2 8 GLN A 267 MET A 275 -1 O GLY A 268 N VAL A 253 SHEET 1 AA3 2 LEU A 247 LYS A 248 0 SHEET 2 AA3 2 GLU A 282 ALA A 283 -1 O ALA A 283 N LEU A 247 SHEET 1 AA4 2 VAL A 316 VAL A 317 0 SHEET 2 AA4 2 VAL A 393 VAL A 394 -1 O VAL A 393 N VAL A 317 SHEET 1 AA5 8 ILE A 369 GLU A 372 0 SHEET 2 AA5 8 ALA A 349 VAL A 362 -1 N LYS A 361 O VAL A 370 SHEET 3 AA5 8 SER A 382 PRO A 389 -1 O VAL A 386 N GLU A 356 SHEET 4 AA5 8 THR A 322 VAL A 329 -1 N ILE A 327 O ALA A 383 SHEET 5 AA5 8 MET A 414 GLN A 425 -1 O GLN A 425 N THR A 322 SHEET 6 AA5 8 ARG A 406 ASP A 411 -1 N PHE A 407 O GLY A 419 SHEET 7 AA5 8 VAL A 343 ALA A 346 -1 N VAL A 343 O ARG A 410 SHEET 8 AA5 8 ALA A 349 VAL A 362 -1 O ALA A 349 N ALA A 346 SHEET 1 AA6 6 THR B 76 GLU B 79 0 SHEET 2 AA6 6 TYR B 84 ASP B 89 -1 O ILE B 87 N THR B 76 SHEET 3 AA6 6 HIS B 7 GLY B 14 1 N ILE B 10 O THR B 86 SHEET 4 AA6 6 ALA B 109 ALA B 115 1 O VAL B 111 N ILE B 13 SHEET 5 AA6 6 HIS B 138 ASN B 144 1 O ASN B 144 N VAL B 114 SHEET 6 AA6 6 VAL B 177 PRO B 179 1 O ILE B 178 N VAL B 141 SHEET 1 AA7 8 GLU B 278 LEU B 280 0 SHEET 2 AA7 8 GLN B 267 MET B 275 -1 N ILE B 273 O LEU B 280 SHEET 3 AA7 8 ASN B 288 ARG B 294 -1 O GLY B 290 N GLU B 274 SHEET 4 AA7 8 GLY B 235 ARG B 241 -1 N GLY B 240 O ILE B 289 SHEET 5 AA7 8 ILE B 223 ILE B 231 -1 N TYR B 229 O VAL B 237 SHEET 6 AA7 8 VAL B 306 HIS B 309 -1 O ALA B 307 N ILE B 223 SHEET 7 AA7 8 VAL B 252 GLU B 256 -1 N GLU B 256 O VAL B 306 SHEET 8 AA7 8 GLN B 267 MET B 275 -1 O GLY B 268 N VAL B 253 SHEET 1 AA8 2 LEU B 247 LYS B 248 0 SHEET 2 AA8 2 GLU B 282 ALA B 283 -1 O ALA B 283 N LEU B 247 SHEET 1 AA9 2 VAL B 316 VAL B 317 0 SHEET 2 AA9 2 VAL B 393 VAL B 394 -1 O VAL B 393 N VAL B 317 SHEET 1 AB1 8 ILE B 369 GLU B 372 0 SHEET 2 AB1 8 ALA B 349 VAL B 362 -1 N LYS B 361 O VAL B 370 SHEET 3 AB1 8 SER B 382 PRO B 389 -1 O SER B 382 N VAL B 362 SHEET 4 AB1 8 THR B 322 VAL B 329 -1 N ALA B 325 O VAL B 385 SHEET 5 AB1 8 MET B 414 GLN B 425 -1 O GLN B 425 N THR B 322 SHEET 6 AB1 8 ARG B 406 ASP B 411 -1 N ASP B 411 O MET B 414 SHEET 7 AB1 8 VAL B 343 ALA B 346 -1 N VAL B 343 O ARG B 410 SHEET 8 AB1 8 ALA B 349 VAL B 362 -1 O ILE B 351 N LEU B 344 SHEET 1 AB2 4 GLY C 37 ALA C 47 0 SHEET 2 AB2 4 LEU C 50 GLY C 59 -1 O LYS C 54 N GLU C 42 SHEET 3 AB2 4 LEU C 6 PRO C 14 -1 N VAL C 12 O LEU C 53 SHEET 4 AB2 4 VAL C 80 ARG C 90 -1 O GLU C 86 N VAL C 9 SHEET 1 AB3 4 GLY D 37 ALA D 47 0 SHEET 2 AB3 4 LEU D 50 GLY D 59 -1 O LYS D 54 N GLU D 42 SHEET 3 AB3 4 LEU D 6 PRO D 14 -1 N VAL D 12 O LEU D 53 SHEET 4 AB3 4 VAL D 80 ARG D 90 -1 O GLU D 86 N VAL D 9 CISPEP 1 GLU A 256 PRO A 257 0 5.00 CISPEP 2 GLU B 256 PRO B 257 0 6.32 CRYST1 55.149 70.194 77.822 112.90 91.77 89.98 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018133 -0.000008 0.000605 0.00000 SCALE2 0.000000 0.014246 0.006021 0.00000 SCALE3 0.000000 0.000000 0.013957 0.00000