HEADER TRANSFERASE 18-AUG-20 7CTA TITLE CRYSTAL STRUCTURE OF CX-SAM BOUND CMOB FROM VIBRIO VULNIFICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA U34 CARBOXYMETHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS MO6-24/O; SOURCE 3 ORGANISM_TAXID: 914127; SOURCE 4 STRAIN: MO6-24/O; SOURCE 5 GENE: CMOB, CRN46_03385, CRN52_23395, D8T49_20765, D8T54_03695, SOURCE 6 JS86_05215; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CARBOXYMETHYL TRANSFERASE, TRNA MODIFICATION, CX-SAM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KIM,S.JEONG REVDAT 2 29-NOV-23 7CTA 1 REMARK REVDAT 1 03-MAR-21 7CTA 0 JRNL AUTH S.JEONG,J.KIM JRNL TITL STRUCTURAL SNAPSHOTS OF CMOB IN VARIOUS STATES DURING WOBBLE JRNL TITL 2 URIDINE MODIFICATION OF TRNA. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 534 604 2021 JRNL REFN ESSN 1090-2104 JRNL PMID 33213836 JRNL DOI 10.1016/J.BBRC.2020.11.033 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 16820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 889 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81000 REMARK 3 B22 (A**2) : 1.06000 REMARK 3 B33 (A**2) : 1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.385 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.327 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.510 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5548 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5029 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7557 ; 1.489 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11661 ; 1.192 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 654 ; 7.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 312 ;34.611 ;21.891 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 908 ;16.813 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;19.844 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 690 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6161 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1189 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 325 B 0 325 10618 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300016787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17780 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4QNX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE MONOHYDRATE, TRIS REMARK 280 HYDROCHLORIDE PH 8.5, PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 90.98100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.28700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 90.98100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.28700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 GLY A 331 REMARK 465 HIS B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 GLY B 331 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 44 CE NZ REMARK 470 LYS A 77 NZ REMARK 470 LYS A 240 CE NZ REMARK 470 LYS A 321 CE NZ REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 PHE B 71 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 GLU B 241 CG CD OE1 OE2 REMARK 470 LYS B 321 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 23 -35.66 -136.04 REMARK 500 SER A 62 -168.69 -161.30 REMARK 500 LYS A 122 114.50 -34.31 REMARK 500 ASP A 171 119.68 -36.96 REMARK 500 ASP A 232 -169.70 -76.45 REMARK 500 GLU A 241 -139.01 -90.20 REMARK 500 GLN A 245 -8.56 74.06 REMARK 500 ASN A 248 77.52 -115.72 REMARK 500 TYR A 250 -91.28 -133.99 REMARK 500 ASP A 274 137.03 177.98 REMARK 500 PRO A 323 153.62 -48.90 REMARK 500 VAL B 23 -34.25 -136.45 REMARK 500 SER B 62 -168.69 -161.18 REMARK 500 LYS B 122 114.64 -35.39 REMARK 500 ASP B 171 119.86 -36.05 REMARK 500 ASP B 232 -169.33 -77.93 REMARK 500 GLU B 241 -105.38 -119.39 REMARK 500 GLN B 245 -4.81 72.41 REMARK 500 TYR B 250 -92.26 -134.78 REMARK 500 ASP B 274 136.91 -177.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GEK A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GEK B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 DBREF1 7CTA A 1 323 UNP A0A087JHK9_VIBVL DBREF2 7CTA A A0A087JHK9 1 323 DBREF1 7CTA B 1 323 UNP A0A087JHK9_VIBVL DBREF2 7CTA B A0A087JHK9 1 323 SEQADV 7CTA MET A 0 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA GLY A 324 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS A 325 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS A 326 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS A 327 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS A 328 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS A 329 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS A 330 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA GLY A 331 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA MET B 0 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA GLY B 324 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS B 325 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS B 326 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS B 327 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS B 328 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS B 329 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA HIS B 330 UNP A0A087JHK EXPRESSION TAG SEQADV 7CTA GLY B 331 UNP A0A087JHK EXPRESSION TAG SEQRES 1 A 332 MET MET PHE ASN PHE ALA ASN PHE TYR GLN LEU ILE ALA SEQRES 2 A 332 GLN ASP THR ARG LEU GLN PRO TRP LEU ASN VAL LEU PRO SEQRES 3 A 332 GLN GLN LEU THR ASP TRP GLN ASN ALA GLU HIS GLY ASP SEQRES 4 A 332 PHE PRO ARG TRP LEU LYS ALA LEU ASN LYS ILE PRO GLU SEQRES 5 A 332 GLY ALA PRO ASP GLN ILE ASP ILE LYS HIS SER VAL THR SEQRES 6 A 332 ILE SER ASN ASP THR PRO PHE HIS GLN GLY GLU LEU LYS SEQRES 7 A 332 LYS LEU GLU SER LEU LEU ARG THR PHE HIS PRO TRP ARG SEQRES 8 A 332 LYS GLY PRO TYR THR VAL HIS GLY ILE HIS ILE ASP THR SEQRES 9 A 332 GLU TRP ARG SER ASP TRP LYS TRP ASP ARG VAL LEU PRO SEQRES 10 A 332 HIS ILE SER PRO LEU LYS ASN ARG SER VAL LEU ASP VAL SEQRES 11 A 332 GLY CYS GLY ASN GLY TYR HIS MET TRP ARG MET LEU GLY SEQRES 12 A 332 GLU GLY ALA ARG LEU CYS VAL GLY ILE ASP PRO SER HIS SEQRES 13 A 332 LEU PHE LEU ILE GLN PHE GLU ALA ILE ARG LYS LEU MET SEQRES 14 A 332 GLY GLY ASP GLN ARG ALA HIS LEU LEU PRO LEU GLY ILE SEQRES 15 A 332 GLU GLN LEU PRO LYS LEU GLU ALA PHE ASP THR VAL PHE SEQRES 16 A 332 SER MET GLY VAL LEU TYR HIS ARG ARG SER PRO LEU ASP SEQRES 17 A 332 HIS LEU ILE GLN LEU LYS ASP GLN LEU VAL SER GLY GLY SEQRES 18 A 332 GLU LEU ILE LEU GLU THR LEU VAL ILE GLU GLY ASP GLU SEQRES 19 A 332 THR ALA VAL LEU VAL PRO LYS GLU ARG TYR ALA GLN MET SEQRES 20 A 332 ARG ASN VAL TYR PHE PHE PRO SER ALA ARG ALA LEU LYS SEQRES 21 A 332 VAL TRP LEU GLU LEU VAL GLY PHE GLU ASP VAL ARG ILE SEQRES 22 A 332 VAL ASP GLU ASN VAL THR SER VAL ASP GLU GLN ARG THR SEQRES 23 A 332 THR ASN TRP MET THR HIS ASN SER LEU PRO ASP TYR LEU SEQRES 24 A 332 ASP GLN ASN ASP PRO SER LYS THR VAL GLU GLY TYR PRO SEQRES 25 A 332 ALA PRO ARG ARG ALA ILE LEU VAL ALA LYS LYS PRO GLY SEQRES 26 A 332 HIS HIS HIS HIS HIS HIS GLY SEQRES 1 B 332 MET MET PHE ASN PHE ALA ASN PHE TYR GLN LEU ILE ALA SEQRES 2 B 332 GLN ASP THR ARG LEU GLN PRO TRP LEU ASN VAL LEU PRO SEQRES 3 B 332 GLN GLN LEU THR ASP TRP GLN ASN ALA GLU HIS GLY ASP SEQRES 4 B 332 PHE PRO ARG TRP LEU LYS ALA LEU ASN LYS ILE PRO GLU SEQRES 5 B 332 GLY ALA PRO ASP GLN ILE ASP ILE LYS HIS SER VAL THR SEQRES 6 B 332 ILE SER ASN ASP THR PRO PHE HIS GLN GLY GLU LEU LYS SEQRES 7 B 332 LYS LEU GLU SER LEU LEU ARG THR PHE HIS PRO TRP ARG SEQRES 8 B 332 LYS GLY PRO TYR THR VAL HIS GLY ILE HIS ILE ASP THR SEQRES 9 B 332 GLU TRP ARG SER ASP TRP LYS TRP ASP ARG VAL LEU PRO SEQRES 10 B 332 HIS ILE SER PRO LEU LYS ASN ARG SER VAL LEU ASP VAL SEQRES 11 B 332 GLY CYS GLY ASN GLY TYR HIS MET TRP ARG MET LEU GLY SEQRES 12 B 332 GLU GLY ALA ARG LEU CYS VAL GLY ILE ASP PRO SER HIS SEQRES 13 B 332 LEU PHE LEU ILE GLN PHE GLU ALA ILE ARG LYS LEU MET SEQRES 14 B 332 GLY GLY ASP GLN ARG ALA HIS LEU LEU PRO LEU GLY ILE SEQRES 15 B 332 GLU GLN LEU PRO LYS LEU GLU ALA PHE ASP THR VAL PHE SEQRES 16 B 332 SER MET GLY VAL LEU TYR HIS ARG ARG SER PRO LEU ASP SEQRES 17 B 332 HIS LEU ILE GLN LEU LYS ASP GLN LEU VAL SER GLY GLY SEQRES 18 B 332 GLU LEU ILE LEU GLU THR LEU VAL ILE GLU GLY ASP GLU SEQRES 19 B 332 THR ALA VAL LEU VAL PRO LYS GLU ARG TYR ALA GLN MET SEQRES 20 B 332 ARG ASN VAL TYR PHE PHE PRO SER ALA ARG ALA LEU LYS SEQRES 21 B 332 VAL TRP LEU GLU LEU VAL GLY PHE GLU ASP VAL ARG ILE SEQRES 22 B 332 VAL ASP GLU ASN VAL THR SER VAL ASP GLU GLN ARG THR SEQRES 23 B 332 THR ASN TRP MET THR HIS ASN SER LEU PRO ASP TYR LEU SEQRES 24 B 332 ASP GLN ASN ASP PRO SER LYS THR VAL GLU GLY TYR PRO SEQRES 25 B 332 ALA PRO ARG ARG ALA ILE LEU VAL ALA LYS LYS PRO GLY SEQRES 26 B 332 HIS HIS HIS HIS HIS HIS GLY HET GEK A 401 30 HET SO4 A 402 5 HET GEK B 401 30 HET SO4 B 402 5 HETNAM GEK (2S)-4-[{[(2S,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4- HETNAM 2 GEK DIHYDROXYTETRAHYDROFURAN-2- HETNAM 3 GEK YL]METHYL}(CARBOXYLATOMETHYL)SULFONIO] -2- HETNAM 4 GEK AMMONIOBUTANOATE HETNAM SO4 SULFATE ION HETSYN GEK CARBOXY-S-ADENOSYLMETHIONINE FORMUL 3 GEK 2(C16 H22 N6 O7 S) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *87(H2 O) HELIX 1 AA1 PHE A 4 GLN A 13 1 10 HELIX 2 AA2 LEU A 17 ASN A 22 5 6 HELIX 3 AA3 VAL A 23 ALA A 34 1 12 HELIX 4 AA4 ASP A 38 ILE A 49 1 12 HELIX 5 AA5 HIS A 72 THR A 85 1 14 HELIX 6 AA6 SER A 107 LEU A 115 1 9 HELIX 7 AA7 PRO A 116 ILE A 118 5 3 HELIX 8 AA8 GLY A 134 GLU A 143 1 10 HELIX 9 AA9 SER A 154 MET A 168 1 15 HELIX 10 AB1 GLY A 180 LEU A 184 5 5 HELIX 11 AB2 VAL A 198 ARG A 202 5 5 HELIX 12 AB3 SER A 204 ASP A 214 1 11 HELIX 13 AB4 SER A 254 GLY A 266 1 13 HELIX 14 AB5 SER A 293 TYR A 297 1 5 HELIX 15 AB6 PHE B 4 GLN B 13 1 10 HELIX 16 AB7 LEU B 17 ASN B 22 5 6 HELIX 17 AB8 VAL B 23 ALA B 34 1 12 HELIX 18 AB9 ASP B 38 ILE B 49 1 12 HELIX 19 AC1 HIS B 72 THR B 85 1 14 HELIX 20 AC2 SER B 107 LEU B 115 1 9 HELIX 21 AC3 PRO B 116 ILE B 118 5 3 HELIX 22 AC4 GLY B 134 GLU B 143 1 10 HELIX 23 AC5 SER B 154 MET B 168 1 15 HELIX 24 AC6 GLY B 180 LEU B 184 5 5 HELIX 25 AC7 VAL B 198 ARG B 202 5 5 HELIX 26 AC8 SER B 204 ASP B 214 1 11 HELIX 27 AC9 SER B 254 GLY B 266 1 13 HELIX 28 AD1 SER B 293 TYR B 297 1 5 SHEET 1 AA1 4 GLN A 56 ASP A 58 0 SHEET 2 AA1 4 THR A 64 SER A 66 -1 O SER A 66 N GLN A 56 SHEET 3 AA1 4 TYR A 94 VAL A 96 1 O THR A 95 N ILE A 65 SHEET 4 AA1 4 ILE A 99 ILE A 101 -1 O ILE A 101 N TYR A 94 SHEET 1 AA2 2 LYS A 91 GLY A 92 0 SHEET 2 AA2 2 TRP A 105 ARG A 106 1 O TRP A 105 N GLY A 92 SHEET 1 AA3 7 ALA A 174 LEU A 177 0 SHEET 2 AA3 7 LEU A 147 ILE A 151 1 N GLY A 150 O HIS A 175 SHEET 3 AA3 7 SER A 125 VAL A 129 1 N ASP A 128 O VAL A 149 SHEET 4 AA3 7 PHE A 190 MET A 196 1 O PHE A 194 N VAL A 129 SHEET 5 AA3 7 LEU A 216 VAL A 228 1 O GLU A 225 N SER A 195 SHEET 6 AA3 7 ARG A 314 LYS A 321 -1 O ARG A 314 N VAL A 228 SHEET 7 AA3 7 GLU A 268 VAL A 277 -1 N ASN A 276 O ARG A 315 SHEET 1 AA4 2 VAL A 236 LEU A 237 0 SHEET 2 AA4 2 PHE A 252 PRO A 253 -1 O PHE A 252 N LEU A 237 SHEET 1 AA5 2 LEU A 298 ASP A 299 0 SHEET 2 AA5 2 ASP A 302 THR A 306 -1 O LYS A 305 N ASP A 299 SHEET 1 AA6 4 GLN B 56 ASP B 58 0 SHEET 2 AA6 4 THR B 64 SER B 66 -1 O SER B 66 N GLN B 56 SHEET 3 AA6 4 TYR B 94 VAL B 96 1 O THR B 95 N ILE B 65 SHEET 4 AA6 4 ILE B 99 ILE B 101 -1 O ILE B 101 N TYR B 94 SHEET 1 AA7 2 LYS B 91 GLY B 92 0 SHEET 2 AA7 2 TRP B 105 ARG B 106 1 O TRP B 105 N GLY B 92 SHEET 1 AA8 7 ALA B 174 LEU B 177 0 SHEET 2 AA8 7 LEU B 147 ILE B 151 1 N GLY B 150 O HIS B 175 SHEET 3 AA8 7 SER B 125 VAL B 129 1 N ASP B 128 O VAL B 149 SHEET 4 AA8 7 PHE B 190 MET B 196 1 O PHE B 194 N VAL B 129 SHEET 5 AA8 7 LEU B 216 LEU B 227 1 O GLU B 225 N SER B 195 SHEET 6 AA8 7 ARG B 314 LYS B 321 -1 O LEU B 318 N LEU B 224 SHEET 7 AA8 7 GLU B 268 VAL B 277 -1 N ASN B 276 O ARG B 315 SHEET 1 AA9 2 VAL B 236 LEU B 237 0 SHEET 2 AA9 2 PHE B 252 PRO B 253 -1 O PHE B 252 N LEU B 237 SHEET 1 AB1 2 LEU B 298 ASP B 299 0 SHEET 2 AB1 2 ASP B 302 THR B 306 -1 O LYS B 305 N ASP B 299 CISPEP 1 HIS A 87 PRO A 88 0 -3.37 CISPEP 2 GLY A 92 PRO A 93 0 3.34 CISPEP 3 HIS B 87 PRO B 88 0 -1.35 CISPEP 4 GLY B 92 PRO B 93 0 4.66 SITE 1 AC1 17 LYS A 91 SER A 107 LYS A 110 GLY A 130 SITE 2 AC1 17 GLY A 132 HIS A 136 ASP A 152 PRO A 153 SITE 3 AC1 17 PHE A 157 GLY A 180 ILE A 181 GLU A 182 SITE 4 AC1 17 MET A 196 GLY A 197 TYR A 200 ARG A 202 SITE 5 AC1 17 ARG A 315 SITE 1 AC2 2 MET A 246 GLN A 283 SITE 1 AC3 18 LYS B 91 SER B 107 LYS B 110 GLY B 130 SITE 2 AC3 18 GLY B 132 HIS B 136 ASP B 152 PRO B 153 SITE 3 AC3 18 PHE B 157 GLY B 180 ILE B 181 GLU B 182 SITE 4 AC3 18 MET B 196 GLY B 197 TYR B 200 ARG B 202 SITE 5 AC3 18 ARG B 315 SO4 B 402 SITE 1 AC4 5 ALA B 244 MET B 246 GLN B 283 TYR B 297 SITE 2 AC4 5 GEK B 401 CRYST1 181.962 50.574 104.410 90.00 122.70 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005496 0.000000 0.003528 0.00000 SCALE2 0.000000 0.019773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011381 0.00000